Wall clock time and date at job start Sat Apr 11 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99863 * 2 1 4 4 C 1.53001 * 109.46957 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.61765 * 53.77868 * 4 3 2 6 6 O 1.21278 * 120.00158 * 239.40713 * 5 4 3 7 7 N 1.34780 * 119.99883 * 59.39744 * 5 4 3 8 8 C 1.47016 * 125.64589 * 5.28734 * 7 5 4 9 9 C 1.54315 * 107.27663 * 180.96461 * 8 7 5 10 10 C 1.55153 * 102.86253 * 22.52550 * 9 8 7 11 11 H 1.09003 * 111.04155 * 82.38980 * 10 9 8 12 12 C 1.53001 * 111.00627 * 206.23405 * 10 9 8 13 13 H 1.08995 * 109.47170 * 52.19312 * 12 10 9 14 14 C 1.53001 * 109.47477 * 172.19558 * 12 10 9 15 15 N 1.46505 * 109.46575 * 292.19326 * 12 10 9 16 16 C 1.36941 * 119.99498 * 155.00198 * 15 12 10 17 17 H 1.08001 * 120.00051 * 359.97438 * 16 15 12 18 18 C 1.38817 * 119.99611 * 179.97438 * 16 15 12 19 19 N 1.31620 * 119.99930 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00092 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47336 * 90.00020 * 20 18 16 22 22 H 1.48498 * 109.47210 * 210.00114 * 20 18 16 23 23 H 1.48505 * 109.47064 * 330.00045 * 20 18 16 24 24 C 1.47421 * 125.65021 * 185.58804 * 7 5 4 25 25 C 1.53177 * 109.54212 * 174.00555 * 4 3 2 26 26 C 1.53091 * 109.16307 * 176.84953 * 25 4 3 27 27 O 1.42904 * 109.41403 * 302.38682 * 26 25 4 28 28 C 1.42909 * 114.09624 * 61.15919 * 27 26 25 29 29 C 1.53090 * 109.41258 * 298.83898 * 28 27 26 30 30 H 1.08993 * 109.46990 * 59.99606 * 1 2 3 31 31 H 1.09001 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46804 * 300.00289 * 1 2 3 33 33 H 1.09003 * 109.47223 * 59.99974 * 3 2 1 34 34 H 1.08993 * 109.47197 * 300.00180 * 3 2 1 35 35 H 1.09007 * 109.88572 * 300.50747 * 8 7 5 36 36 H 1.09003 * 109.89101 * 61.67285 * 8 7 5 37 37 H 1.09004 * 110.92511 * 264.11043 * 9 8 7 38 38 H 1.09000 * 110.74714 * 140.85629 * 9 8 7 39 39 H 1.08998 * 109.47201 * 59.99196 * 14 12 10 40 40 H 1.08993 * 109.47125 * 179.97438 * 14 12 10 41 41 H 1.09004 * 109.46472 * 299.99527 * 14 12 10 42 42 H 0.96992 * 120.00299 * 334.99584 * 15 12 10 43 43 H 0.96992 * 120.00079 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.36339 * 274.68164 * 24 7 5 45 45 H 1.09000 * 110.36401 * 36.88767 * 24 7 5 46 46 H 1.08993 * 109.52979 * 56.94195 * 25 4 3 47 47 H 1.08998 * 109.56816 * 296.77864 * 25 4 3 48 48 H 1.08999 * 109.48588 * 182.40718 * 26 25 4 49 49 H 1.09005 * 109.48252 * 62.36854 * 26 25 4 50 50 H 1.08994 * 109.48246 * 58.82532 * 28 27 26 51 51 H 1.09001 * 109.47854 * 178.85983 * 28 27 26 52 52 H 1.08991 * 109.52570 * 297.70646 * 29 28 27 53 53 H 1.09004 * 109.57098 * 177.54629 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9741 0.3083 -1.1442 6 8 4.6030 -0.7053 -0.9256 7 7 3.6672 0.6510 -2.4111 8 6 3.0101 1.8989 -2.8259 9 6 2.8426 1.8411 -4.3588 10 6 2.8938 0.3189 -4.6547 11 1 1.9221 -0.1454 -4.4865 12 6 3.3862 0.0533 -6.0788 13 1 4.3240 0.5836 -6.2438 14 6 3.6090 -1.4483 -6.2697 15 7 2.3837 0.5240 -7.0377 16 6 2.7614 0.8745 -8.3065 17 1 3.7984 0.8043 -8.6000 18 6 1.8114 1.3200 -9.2153 19 7 2.1745 1.6574 -10.4346 20 14 0.0178 1.4407 -8.7079 21 1 -0.2482 2.7896 -8.1467 22 1 -0.8482 1.2183 -9.8936 23 1 -0.2762 0.4101 -7.6799 24 6 3.9294 -0.1663 -3.6097 25 6 4.1597 2.5753 -0.1501 26 6 5.6836 2.4536 -0.0694 27 8 6.0465 1.8459 1.1720 28 6 5.5303 0.5250 1.3480 29 6 4.0002 0.5693 1.3242 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 2.0341 1.9808 -2.3473 36 1 3.6309 2.7529 -2.5547 37 1 3.6605 2.3591 -4.8596 38 1 1.8819 2.2600 -4.6583 39 1 2.6712 -1.9787 -6.1045 40 1 3.9593 -1.6375 -7.2843 41 1 4.3550 -1.7985 -5.5561 42 1 1.4524 0.5873 -6.7741 43 1 1.5108 1.9691 -11.0696 44 1 4.9430 0.0057 -3.9718 45 1 3.7807 -1.2231 -3.3882 46 1 3.8032 3.2234 0.6504 47 1 3.8787 2.9990 -1.1143 48 1 6.1315 3.4453 -0.1333 49 1 6.0433 1.8383 -0.8942 50 1 5.8879 -0.1155 0.5418 51 1 5.8676 0.1274 2.3052 52 1 3.6405 1.1769 2.1545 53 1 3.6041 -0.4422 1.4146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484339327.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:34 Heat of formation + Delta-G solvation = -124.702367 kcal Electronic energy + Delta-G solvation = -32455.753268 eV Core-core repulsion = 28327.383508 eV Total energy + Delta-G solvation = -4128.369759 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.25275 -40.03957 -38.75253 -38.64510 -36.97143 -35.37735 -34.21807 -32.43710 -31.81522 -31.16113 -29.37806 -28.83036 -26.98098 -26.33665 -25.17119 -24.60882 -23.65578 -22.72025 -22.26219 -21.30710 -20.02304 -19.47269 -17.92768 -17.58671 -17.52114 -17.25145 -17.06000 -16.76155 -16.58200 -16.05432 -16.02232 -15.60394 -15.29681 -15.10684 -14.89514 -14.73521 -14.57323 -14.27490 -14.16603 -14.01720 -13.66072 -13.51028 -13.48164 -13.21593 -13.05230 -12.91508 -12.84009 -12.79504 -12.44395 -12.37264 -12.21720 -12.00078 -11.89984 -11.72241 -11.70828 -11.62538 -11.46729 -11.34017 -10.94893 -10.82990 -10.53852 -10.37742 -9.62301 -9.29345 -7.98036 -5.31119 1.40009 1.44031 1.51326 1.57237 1.91874 2.52154 2.66589 2.92313 3.21988 3.33522 3.37965 3.61179 3.63851 3.65915 3.80432 3.87226 3.98364 4.03171 4.09341 4.21376 4.27966 4.36283 4.42604 4.43484 4.49408 4.51278 4.53756 4.56156 4.59363 4.63056 4.67527 4.74870 4.78200 4.84661 4.85813 4.88581 4.92980 4.98480 5.06747 5.07573 5.13872 5.15734 5.17805 5.31804 5.34516 5.54748 5.81932 6.16059 6.19816 6.25659 6.51251 7.11305 7.12496 7.87815 8.08029 9.23850 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.003023 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.773750 B = 9259.595931 C = 9805.913116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.063 3.937 4 C -0.071 4.071 5 C 0.544 3.456 6 O -0.576 6.576 7 N -0.613 5.613 8 C 0.089 3.911 9 C -0.119 4.119 10 C -0.094 4.094 11 H 0.083 0.917 12 C 0.187 3.813 13 H 0.048 0.952 14 C -0.162 4.162 15 N -0.745 5.745 16 C -0.222 4.222 17 H 0.054 0.946 18 C -0.066 4.066 19 N -0.988 5.988 20 Si 0.954 3.046 21 H -0.272 1.272 22 H -0.303 1.303 23 H -0.253 1.253 24 C 0.121 3.879 25 C -0.151 4.151 26 C 0.055 3.945 27 O -0.395 6.395 28 C 0.049 3.951 29 C -0.119 4.119 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.033 0.967 41 H 0.065 0.935 42 H 0.365 0.635 43 H 0.256 0.744 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.121 0.879 49 H 0.028 0.972 50 H 0.048 0.952 51 H 0.104 0.896 52 H 0.096 0.904 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 3.515 28.431 28.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.013 4.013 4 C -0.074 4.074 5 C 0.334 3.666 6 O -0.456 6.456 7 N -0.346 5.346 8 C -0.032 4.032 9 C -0.157 4.157 10 C -0.114 4.114 11 H 0.101 0.899 12 C 0.079 3.921 13 H 0.066 0.934 14 C -0.222 4.222 15 N -0.388 5.388 16 C -0.353 4.353 17 H 0.072 0.928 18 C -0.257 4.257 19 N -0.639 5.639 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.231 1.231 23 H -0.177 1.177 24 C -0.002 4.002 25 C -0.188 4.188 26 C -0.021 4.021 27 O -0.314 6.314 28 C -0.028 4.028 29 C -0.157 4.157 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.199 0.801 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.129 0.871 47 H 0.124 0.876 48 H 0.139 0.861 49 H 0.046 0.954 50 H 0.067 0.933 51 H 0.122 0.878 52 H 0.114 0.886 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.060 2.927 28.600 28.769 hybrid contribution -1.243 -0.330 -0.995 1.626 sum -2.303 2.597 27.605 27.823 Atomic orbital electron populations 1.22879 0.79334 1.03449 1.01112 1.87921 1.21459 1.28256 1.95633 1.22861 0.89872 0.85435 1.03175 1.20929 0.96245 0.96590 0.93668 1.20426 0.77922 0.85520 0.82755 1.90619 1.41920 1.28797 1.84232 1.48496 1.59749 1.20895 1.05427 1.22742 0.98684 0.86455 0.95369 1.22621 1.03932 0.95335 0.93780 1.22462 0.98842 0.96980 0.93145 0.89885 1.20246 0.91864 0.93012 0.86968 0.93427 1.22356 1.01055 0.98195 1.00550 1.42679 1.06186 1.79990 1.09959 1.18979 0.94079 1.34047 0.88207 0.92767 1.25475 1.02404 1.02135 0.95653 1.69890 1.34702 1.53076 1.06189 0.85422 0.80383 0.78833 0.77188 1.19824 1.23052 1.17738 1.22088 0.98606 0.95382 0.84097 1.22540 0.95988 0.93841 1.06473 1.22694 0.94533 0.99244 0.85667 1.87884 1.74863 1.30214 1.38399 1.22819 0.93367 0.83862 1.02705 1.21930 0.96391 1.02078 0.95303 0.93329 0.89596 0.92228 0.89704 0.90579 0.89185 0.88388 0.90618 0.89425 0.93216 0.94820 0.91636 0.80122 0.93519 0.91554 0.91667 0.87065 0.87563 0.86090 0.95378 0.93344 0.87807 0.88583 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.21 9.82 -148.98 -1.46 -9.68 16 3 C 0.06 0.90 4.57 71.98 0.33 1.23 16 4 C -0.07 -1.27 0.34 -52.81 -0.02 -1.29 16 5 C 0.54 13.81 4.75 87.66 0.42 14.22 16 6 O -0.58 -19.23 14.13 -3.02 -0.04 -19.28 16 7 N -0.61 -14.16 3.31 -811.82 -2.69 -16.85 16 8 C 0.09 1.51 5.35 86.73 0.46 1.97 16 9 C -0.12 -2.67 6.28 31.78 0.20 -2.47 16 10 C -0.09 -2.52 2.65 -9.40 -0.02 -2.54 16 11 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 12 C 0.19 6.50 2.42 44.99 0.11 6.61 16 13 H 0.05 1.76 8.02 -2.39 -0.02 1.74 16 14 C -0.16 -5.43 9.27 71.98 0.67 -4.77 16 15 N -0.74 -32.07 4.78 -322.92 -1.54 -33.61 16 16 C -0.22 -12.09 10.41 84.03 0.87 -11.21 16 17 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 18 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 19 N -0.99 -62.23 13.97 21.65 0.30 -61.93 16 20 Si 0.95 43.56 27.73 68.60 1.90 45.47 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.25 -10.35 6.52 99.48 0.65 -9.70 16 24 C 0.12 3.17 5.25 86.86 0.46 3.63 16 25 C -0.15 -1.93 4.77 30.68 0.15 -1.79 16 26 C 0.06 0.94 6.62 72.01 0.48 1.42 16 27 O -0.39 -8.45 10.77 -148.98 -1.60 -10.06 16 28 C 0.05 1.05 6.55 72.01 0.47 1.52 16 29 C -0.12 -2.25 4.44 30.69 0.14 -2.12 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.90 4.78 -2.39 -0.01 0.89 16 35 H 0.09 1.22 5.23 -2.38 -0.01 1.21 16 36 H 0.10 1.24 5.58 -2.39 -0.01 1.23 16 37 H 0.08 1.85 7.99 -2.39 -0.02 1.83 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 1.87 7.23 -2.39 -0.02 1.85 16 42 H 0.37 15.00 5.66 -92.71 -0.52 14.47 16 43 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.07 1.77 8.04 -2.39 -0.02 1.75 16 45 H 0.06 1.87 7.99 -2.39 -0.02 1.85 16 46 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.11 1.05 4.31 -2.39 -0.01 1.04 16 48 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.03 0.60 7.38 -2.38 -0.02 0.59 16 50 H 0.05 1.34 5.79 -2.39 -0.01 1.32 16 51 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.07 1.57 7.85 -2.39 -0.02 1.55 16 Total: -1.00 -74.40 395.34 1.60 -72.80 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.32 Total: 30.34 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 6.42 Total: 2.79 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -3.93 Total: -112.39 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -3.11 Total: -39.01 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.90 Total: 45.47 kcal Total: -74.40 1.60 -72.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484339327.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.903 kcal (2) G-P(sol) polarization free energy of solvation -74.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds