Wall clock time and date at job start Sat Apr 11 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.36945 * 119.99649 * 85.00202 * 4 2 1 6 6 H 1.07997 * 120.00244 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99544 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00617 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99539 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47315 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47431 * 119.99933 * 9 7 5 12 12 H 1.48503 * 109.46941 * 239.99521 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 H 1.08996 * 110.88912 * 57.57152 * 13 2 1 15 15 C 1.55163 * 111.00279 * 181.45314 * 13 2 1 16 16 C 1.54323 * 102.93679 * 153.57387 * 15 13 2 17 17 N 1.47014 * 107.27825 * 337.80484 * 16 15 13 18 18 C 1.34778 * 125.65589 * 178.96164 * 17 16 15 19 19 O 1.21280 * 120.00452 * 179.97438 * 18 17 16 20 20 C 1.50705 * 119.99470 * 359.97438 * 18 17 16 21 21 C 1.53000 * 109.47053 * 179.97438 * 20 18 17 22 22 O 1.42895 * 109.46945 * 179.97438 * 21 20 18 23 23 C 1.42898 * 113.99923 * 180.02562 * 22 21 20 24 24 C 1.53179 * 109.54495 * 269.82628 * 23 22 21 25 25 C 1.53099 * 109.15760 * 183.24194 * 24 23 22 26 26 O 1.42904 * 109.49114 * 57.47011 * 25 24 23 27 27 C 1.42904 * 114.09760 * 298.88846 * 26 25 24 28 28 C 1.53093 * 109.41370 * 61.15810 * 27 26 25 29 29 C 1.47428 * 108.70126 * 358.94313 * 17 16 15 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 34 34 H 0.97006 * 120.00607 * 180.02562 * 8 7 5 35 35 H 1.09000 * 110.71688 * 271.93294 * 15 13 2 36 36 H 1.09000 * 110.72061 * 35.03478 * 15 13 2 37 37 H 1.09001 * 109.88568 * 97.22878 * 16 15 13 38 38 H 1.09000 * 109.87993 * 218.22768 * 16 15 13 39 39 H 1.08994 * 109.47109 * 300.00294 * 20 18 17 40 40 H 1.09003 * 109.46886 * 59.99585 * 20 18 17 41 41 H 1.08998 * 109.47198 * 300.00503 * 21 20 18 42 42 H 1.09001 * 109.46657 * 60.00112 * 21 20 18 43 43 H 1.09004 * 109.54446 * 30.00383 * 23 22 21 44 44 H 1.09001 * 109.52139 * 303.05507 * 24 23 22 45 45 H 1.08995 * 109.52269 * 63.24520 * 24 23 22 46 46 H 1.09007 * 109.40637 * 297.49205 * 25 24 23 47 47 H 1.08997 * 109.49525 * 177.50699 * 25 24 23 48 48 H 1.08994 * 109.48428 * 301.17480 * 27 26 25 49 49 H 1.09002 * 109.48910 * 181.14183 * 27 26 25 50 50 H 1.09001 * 109.52757 * 182.48696 * 28 27 26 51 51 H 1.08998 * 109.57555 * 62.32305 * 28 27 26 52 52 H 1.09005 * 110.36773 * 265.28883 * 29 17 16 53 53 H 1.09002 * 110.36822 * 142.96358 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6113 -0.6621 -3.5092 8 7 2.9244 -1.9391 -3.4501 9 14 2.7905 0.2700 -5.1182 10 1 2.3765 1.6824 -4.9208 11 1 4.2073 0.2261 -5.5606 12 1 1.9293 -0.3579 -6.1524 13 6 2.0400 -0.7213 1.2493 14 1 1.6547 -1.7399 1.2944 15 6 3.5906 -0.7103 1.3037 16 6 3.8840 -0.8150 2.8151 17 7 2.6860 -0.3454 3.5261 18 6 2.5341 -0.2995 4.8645 19 8 1.4975 0.1088 5.3436 20 6 3.6526 -0.7557 5.7657 21 6 3.2257 -0.6007 7.2268 22 8 4.2860 -1.0338 8.0812 23 6 3.9882 -0.9304 9.4750 24 6 4.4209 0.4455 9.9908 25 6 4.1727 0.5173 11.4998 26 8 4.8836 -0.5378 12.1506 27 6 4.4856 -1.8481 11.7422 28 6 4.7485 -2.0158 10.2434 29 6 1.6782 0.0675 2.5324 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 -1.1526 34 1 3.2477 -2.3965 -4.2421 35 1 4.0013 -1.5679 0.7708 36 1 3.9843 0.2204 0.8952 37 1 4.0909 -1.8515 3.0817 38 1 4.7390 -0.1891 3.0710 39 1 3.8794 -1.8021 5.5621 40 1 4.5390 -0.1491 5.5802 41 1 2.9991 0.4459 7.4300 42 1 2.3391 -1.2071 7.4124 43 1 2.9167 -1.0572 9.6294 44 1 5.4821 0.5925 9.7901 45 1 3.8433 1.2211 9.4879 46 1 3.1058 0.4122 11.6968 47 1 4.5196 1.4780 11.8802 48 1 3.4229 -1.9842 11.9423 49 1 5.0581 -2.5915 12.2970 50 1 4.4049 -2.9987 9.9209 51 1 5.8164 -1.9207 10.0470 52 1 1.7431 1.1401 2.3494 53 1 0.6779 -0.2002 2.8729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484353980.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:37 Heat of formation + Delta-G solvation = -150.083928 kcal Electronic energy + Delta-G solvation = -29538.580335 eV Core-core repulsion = 25409.109948 eV Total energy + Delta-G solvation = -4129.470386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.26978 -40.57568 -39.22748 -38.39546 -36.78159 -34.33354 -33.98405 -32.40966 -32.11839 -31.46324 -30.77601 -28.83835 -26.45069 -25.69699 -24.93820 -24.55578 -23.47183 -22.79290 -21.42433 -21.08171 -20.10935 -19.15146 -18.56624 -17.66492 -17.60498 -17.17559 -16.95849 -16.81537 -16.42015 -16.11900 -15.85345 -15.58308 -15.41333 -15.14658 -14.90453 -14.66684 -14.54331 -14.23219 -14.01375 -13.89210 -13.71106 -13.43583 -13.35306 -13.20292 -12.97103 -12.89509 -12.79527 -12.68984 -12.34279 -12.30680 -12.12012 -12.10826 -11.97967 -11.82188 -11.64412 -11.54111 -11.37644 -11.36860 -11.03937 -10.91264 -10.68939 -10.52210 -9.70318 -8.96573 -7.90582 -5.17266 1.48716 1.49962 1.52417 1.58763 1.77839 2.57932 2.60647 2.94065 3.40218 3.44947 3.68500 3.69337 3.72222 3.74802 3.85753 3.95347 3.99634 4.02077 4.11304 4.24894 4.25788 4.32419 4.34604 4.38224 4.46848 4.51929 4.55694 4.60992 4.67286 4.70508 4.73669 4.74482 4.76842 4.81683 4.83802 4.90348 5.00408 5.03153 5.06399 5.10365 5.16672 5.18599 5.22203 5.34545 5.39127 5.56393 5.61349 6.14881 6.20716 6.31844 6.46824 7.03390 7.39090 8.15075 8.38730 9.32789 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.033108 B = 0.001570 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.524244 B =17824.815186 C =18156.072456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.181 3.819 3 H 0.046 0.954 4 N -0.730 5.730 5 C -0.231 4.231 6 H 0.073 0.927 7 C -0.073 4.073 8 N -0.967 5.967 9 Si 0.964 3.036 10 H -0.268 1.268 11 H -0.295 1.295 12 H -0.298 1.298 13 C -0.094 4.094 14 H 0.077 0.923 15 C -0.113 4.113 16 C 0.103 3.897 17 N -0.615 5.615 18 C 0.530 3.470 19 O -0.587 6.587 20 C -0.126 4.126 21 C 0.082 3.918 22 O -0.391 6.391 23 C 0.083 3.917 24 C -0.177 4.177 25 C 0.062 3.938 26 O -0.403 6.403 27 C 0.061 3.939 28 C -0.150 4.150 29 C 0.120 3.880 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.108 0.892 48 H 0.063 0.937 49 H 0.114 0.886 50 H 0.089 0.911 51 H 0.072 0.928 52 H 0.071 0.929 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 1.441 30.150 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.073 3.927 3 H 0.064 0.936 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.091 0.909 7 C -0.266 4.266 8 N -0.618 5.618 9 Si 0.795 3.205 10 H -0.193 1.193 11 H -0.222 1.222 12 H -0.226 1.226 13 C -0.114 4.114 14 H 0.095 0.905 15 C -0.152 4.152 16 C -0.019 4.019 17 N -0.348 5.348 18 C 0.320 3.680 19 O -0.468 6.468 20 C -0.165 4.165 21 C 0.005 3.995 22 O -0.310 6.310 23 C 0.025 3.975 24 C -0.215 4.215 25 C -0.015 4.015 26 O -0.322 6.322 27 C -0.015 4.015 28 C -0.188 4.188 29 C -0.003 4.003 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.126 0.874 48 H 0.082 0.918 49 H 0.132 0.868 50 H 0.107 0.893 51 H 0.091 0.909 52 H 0.089 0.911 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.783 1.786 30.434 30.720 hybrid contribution -0.423 0.041 -1.721 1.772 sum 3.360 1.827 28.713 28.967 Atomic orbital electron populations 1.22361 0.98211 1.00798 1.00565 1.20306 0.92349 0.94917 0.85153 0.93552 1.42504 1.78296 1.10277 1.05891 1.19602 1.34312 0.94066 0.88319 0.90889 1.25415 1.03341 0.96792 1.01003 1.69798 1.52890 1.10016 1.29126 0.85200 0.76667 0.78221 0.80448 1.19294 1.22218 1.22566 1.22458 0.96382 0.99450 0.93086 0.90498 1.22487 0.94980 1.03265 0.94419 1.22252 0.87226 1.01127 0.91288 1.48606 1.17893 1.63491 1.04816 1.20526 0.88733 0.77413 0.81320 1.90690 1.31464 1.49564 1.75057 1.21408 0.97364 1.05633 0.92129 1.22071 0.89282 0.99249 0.88865 1.87839 1.40599 1.86260 1.16329 1.22258 0.99205 0.95328 0.80662 1.22709 1.03204 0.98011 0.97556 1.22662 0.96816 0.91521 0.90486 1.87923 1.63767 1.15293 1.65184 1.22729 1.01022 0.84632 0.93135 1.22289 1.01699 0.99168 0.95623 1.22157 0.92397 0.98895 0.86895 0.94499 0.91571 0.93936 0.79434 0.94234 0.90525 0.91202 0.89372 0.89069 0.86384 0.86373 0.93074 0.93045 0.91432 0.91008 0.90306 0.92000 0.87407 0.91836 0.86818 0.89275 0.90944 0.91107 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 9.34 71.98 0.67 -4.77 16 2 C 0.18 6.58 2.41 44.99 0.11 6.69 16 3 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 4 N -0.73 -34.22 4.82 -322.94 -1.56 -35.78 16 5 C -0.23 -12.24 9.93 84.03 0.83 -11.41 16 6 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 7 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 8 N -0.97 -57.26 13.06 21.65 0.28 -56.98 16 9 Si 0.96 45.19 29.55 68.60 2.03 47.21 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 12 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 13 C -0.09 -2.74 2.62 -9.40 -0.02 -2.77 16 14 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 15 C -0.11 -3.02 6.13 31.78 0.19 -2.82 16 16 C 0.10 2.02 6.49 86.73 0.56 2.58 16 17 N -0.62 -14.56 3.33 -811.79 -2.70 -17.26 16 18 C 0.53 12.91 7.85 87.66 0.69 13.59 16 19 O -0.59 -18.62 16.24 -3.03 -0.05 -18.67 16 20 C -0.13 -2.15 5.26 29.85 0.16 -2.00 16 21 C 0.08 1.52 5.04 71.98 0.36 1.88 16 22 O -0.39 -7.07 10.00 -148.98 -1.49 -8.56 16 23 C 0.08 1.21 2.69 30.72 0.08 1.29 16 24 C -0.18 -2.37 5.77 30.69 0.18 -2.20 16 25 C 0.06 0.71 6.84 72.02 0.49 1.21 16 26 O -0.40 -6.03 10.77 -148.98 -1.60 -7.63 16 27 C 0.06 0.64 6.84 72.01 0.49 1.13 16 28 C -0.15 -1.83 5.79 30.69 0.18 -1.65 16 29 C 0.12 3.17 5.56 86.85 0.48 3.65 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.87 7.45 -2.39 -0.02 1.85 16 32 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.37 18.88 7.80 -92.71 -0.72 18.16 16 34 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.07 2.01 8.04 -2.39 -0.02 1.99 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.05 1.00 7.93 -2.39 -0.02 0.98 16 42 H 0.05 1.01 8.04 -2.39 -0.02 0.99 16 43 H 0.07 0.91 7.79 -2.38 -0.02 0.89 16 44 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.01 7.97 -2.39 -0.02 0.99 16 46 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 47 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.07 1.87 8.00 -2.38 -0.02 1.85 16 53 H 0.07 1.99 7.96 -2.39 -0.02 1.97 16 Total: -1.00 -67.55 420.44 0.98 -66.57 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.14 Total: 30.28 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 5.93 Total: 0.82 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -3.97 Total: -110.02 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -3.14 Total: -34.86 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -67.55 0.98 -66.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484353980.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.517 kcal (2) G-P(sol) polarization free energy of solvation -67.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds