Wall clock time and date at job start Sat Apr 11 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00004 * 2 1 4 4 H 1.09001 * 109.46969 * 29.99503 * 3 2 1 5 5 C 1.53007 * 109.46917 * 269.99630 * 3 2 1 6 6 C 1.52993 * 109.47519 * 149.99757 * 3 2 1 7 7 C 1.53007 * 109.46792 * 295.00013 * 6 3 2 8 8 C 1.50699 * 109.46890 * 179.97438 * 7 6 3 9 9 O 1.21283 * 120.00332 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00386 * 179.97438 * 8 7 6 11 11 C 1.47161 * 120.98330 * 0.02562 * 10 8 7 12 12 C 1.53300 * 108.37118 * 129.38539 * 11 10 8 13 13 O 1.42968 * 109.22612 * 52.35397 * 12 11 10 14 14 C 1.42893 * 114.20887 * 297.50525 * 13 12 11 15 15 C 1.52990 * 109.55769 * 302.52586 * 14 13 12 16 16 C 1.53195 * 109.34738 * 300.95636 * 15 14 13 17 17 N 1.46932 * 108.77517 * 305.43150 * 16 15 14 18 18 C 1.36939 * 120.63776 * 233.64856 * 17 16 15 19 19 H 1.07994 * 120.00388 * 29.31573 * 18 17 16 20 20 C 1.38812 * 119.99894 * 209.31432 * 18 17 16 21 21 N 1.31629 * 119.99846 * 24.33934 * 20 18 17 22 22 Si 1.86794 * 120.00220 * 204.34404 * 20 18 17 23 23 H 1.48499 * 109.47166 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.47008 * 299.99540 * 22 20 18 25 25 H 1.48500 * 109.47268 * 59.99635 * 22 20 18 26 26 C 1.46925 * 118.71825 * 53.92877 * 17 16 15 27 27 C 1.52999 * 109.54877 * 182.22567 * 14 13 12 28 28 C 1.47149 * 120.99342 * 179.97438 * 10 8 7 29 29 H 1.08997 * 109.47586 * 300.00467 * 1 2 3 30 30 H 1.08998 * 109.46836 * 60.00735 * 1 2 3 31 31 H 1.09007 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47108 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.46808 * 300.00082 * 5 3 2 34 34 H 1.09001 * 109.47080 * 60.00157 * 5 3 2 35 35 H 1.08995 * 109.47759 * 174.99723 * 6 3 2 36 36 H 1.08999 * 109.47323 * 54.99499 * 6 3 2 37 37 H 1.08999 * 109.47147 * 59.99891 * 7 6 3 38 38 H 1.08994 * 109.47253 * 299.99329 * 7 6 3 39 39 H 1.08994 * 109.68916 * 249.10678 * 11 10 8 40 40 H 1.09007 * 109.67928 * 9.67074 * 11 10 8 41 41 H 1.08998 * 109.51173 * 172.27788 * 12 11 10 42 42 H 1.09005 * 109.51524 * 292.38219 * 12 11 10 43 43 H 1.09006 * 109.48402 * 180.99735 * 15 14 13 44 44 H 1.08991 * 109.51177 * 60.93914 * 15 14 13 45 45 H 1.09000 * 109.58085 * 185.64434 * 16 15 14 46 46 H 1.08999 * 109.70030 * 65.29021 * 16 15 14 47 47 H 0.96998 * 119.99676 * 5.78285 * 21 20 18 48 48 H 1.09008 * 109.58706 * 65.84446 * 26 17 16 49 49 H 1.08998 * 109.59128 * 186.27686 * 26 17 16 50 50 H 1.08997 * 109.49447 * 178.99766 * 27 14 13 51 51 H 1.09001 * 109.49212 * 299.05162 * 27 14 13 52 52 H 1.09005 * 109.67843 * 110.76276 * 28 10 8 53 53 H 1.08996 * 109.70440 * 350.24439 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.3588 1.2633 0.7213 7 6 3.1381 0.9185 2.1955 8 6 4.4665 0.8764 2.9059 9 8 5.4892 1.0997 2.2932 10 7 4.5183 0.5907 4.2219 11 6 3.2912 0.3157 4.9863 12 6 3.4867 -0.9935 5.7595 13 8 4.6996 -0.9187 6.5127 14 6 5.8766 -0.7743 5.7154 15 6 5.9743 -1.9409 4.7305 16 6 6.0190 -3.2597 5.5088 17 7 7.1177 -3.1972 6.4825 18 6 8.0769 -4.1739 6.5159 19 1 8.3369 -4.7066 5.6132 20 6 8.7151 -4.4793 7.7102 21 7 8.1232 -4.2215 8.8573 22 14 10.4137 -5.2561 7.6896 23 1 10.8717 -5.4820 9.0840 24 1 10.3554 -6.5548 6.9717 25 1 11.3641 -4.3496 6.9965 26 6 7.1637 -2.0698 7.4235 27 6 7.1099 -0.7611 6.6207 28 6 5.8035 0.5432 4.9370 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.6607 2.7672 -1.4426 33 1 2.8830 1.0773 -1.9563 34 1 1.2569 1.8013 -1.9564 35 1 3.8426 2.2370 0.6443 36 1 3.9931 0.5052 0.2619 37 1 2.6543 -0.0552 2.2725 38 1 2.5040 1.6766 2.6550 39 1 3.1037 1.1306 5.6855 40 1 2.4477 0.2161 4.3030 41 1 2.6464 -1.1452 6.4369 42 1 3.5438 -1.8257 5.0579 43 1 6.8816 -1.8390 4.1351 44 1 5.1052 -1.9359 4.0729 45 1 6.1892 -4.0858 4.8183 46 1 5.0748 -3.4096 6.0323 47 1 7.2093 -3.8966 8.8693 48 1 6.3099 -2.1227 8.0991 49 1 8.0895 -2.1103 7.9974 50 1 8.0082 -0.6688 6.0104 51 1 7.0482 0.0834 7.3072 52 1 5.8693 1.3824 5.6296 53 1 6.6242 0.5927 4.2215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485006903.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:10 Heat of formation + Delta-G solvation = -129.293506 kcal Electronic energy + Delta-G solvation = -31819.370112 eV Core-core repulsion = 27690.801266 eV Total energy + Delta-G solvation = -4128.568846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.90228 -40.27082 -39.20615 -38.03088 -35.82818 -34.97174 -34.62991 -32.95922 -31.71124 -31.16407 -30.06122 -28.40042 -27.49658 -26.27410 -24.89090 -24.70291 -23.96540 -22.55371 -21.92602 -20.62755 -19.93656 -19.46420 -18.34554 -17.82997 -17.31849 -17.02189 -16.80978 -16.32215 -16.16947 -15.97731 -15.94173 -15.79156 -15.42097 -15.27014 -15.16025 -14.97265 -14.74228 -14.22389 -13.89602 -13.75757 -13.66249 -13.39793 -13.36029 -13.28602 -13.06147 -12.90375 -12.65247 -12.51801 -12.36442 -12.22288 -12.13482 -12.07842 -11.98228 -11.93503 -11.86746 -11.54240 -11.47563 -11.26008 -10.91212 -10.81833 -10.51021 -10.47759 -9.57455 -8.93115 -8.25172 -5.42699 1.55407 1.57128 1.64727 1.83270 1.84071 2.63973 2.72963 2.89879 3.21245 3.38625 3.48214 3.66017 3.71063 3.76601 3.82217 3.95242 4.09223 4.13712 4.17288 4.25994 4.27444 4.33247 4.38505 4.47190 4.50578 4.54550 4.57620 4.60328 4.61966 4.64341 4.72092 4.77885 4.78760 4.81207 4.85878 4.92117 4.94306 4.97717 5.01572 5.03641 5.12356 5.15425 5.19801 5.30370 5.33512 5.44100 5.82010 6.25778 6.31929 6.35059 6.38567 7.05316 7.08357 7.76687 8.22480 8.98549 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.002485 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.046438 B =11263.674031 C =11467.780577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.087 3.913 4 H 0.085 0.915 5 C -0.175 4.175 6 C -0.100 4.100 7 C -0.127 4.127 8 C 0.509 3.491 9 O -0.586 6.586 10 N -0.613 5.613 11 C 0.077 3.923 12 C 0.033 3.967 13 O -0.380 6.380 14 C 0.127 3.873 15 C -0.136 4.136 16 C 0.155 3.845 17 N -0.616 5.616 18 C -0.359 4.359 19 H 0.045 0.955 20 C -0.073 4.073 21 N -0.939 5.939 22 Si 1.115 2.885 23 H -0.289 1.289 24 H -0.277 1.277 25 H -0.280 1.280 26 C 0.169 3.831 27 C -0.114 4.114 28 C 0.098 3.902 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.018 0.982 47 H 0.254 0.746 48 H 0.010 0.990 49 H 0.043 0.957 50 H 0.068 0.932 51 H 0.082 0.918 52 H 0.085 0.915 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.568 15.766 -15.076 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.030 3.970 4 H 0.103 0.897 5 C -0.232 4.232 6 C -0.138 4.138 7 C -0.166 4.166 8 C 0.300 3.700 9 O -0.466 6.466 10 N -0.347 5.347 11 C -0.044 4.044 12 C -0.044 4.044 13 O -0.299 6.299 14 C 0.087 3.913 15 C -0.176 4.176 16 C 0.030 3.970 17 N -0.340 5.340 18 C -0.489 4.489 19 H 0.063 0.937 20 C -0.270 4.270 21 N -0.580 5.580 22 Si 0.939 3.061 23 H -0.215 1.215 24 H -0.202 1.202 25 H -0.206 1.206 26 C 0.043 3.957 27 C -0.153 4.153 28 C -0.025 4.025 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.127 0.873 38 H 0.142 0.858 39 H 0.113 0.887 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.064 0.936 48 H 0.028 0.972 49 H 0.062 0.938 50 H 0.086 0.914 51 H 0.100 0.900 52 H 0.103 0.897 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.676 15.184 -14.266 27.322 hybrid contribution -1.162 0.237 -1.085 1.608 sum -18.838 15.421 -15.351 28.781 Atomic orbital electron populations 1.22949 0.79833 1.03465 1.00961 1.87935 1.21126 1.28589 1.95229 1.22197 0.94096 0.84774 0.95960 0.89729 1.22274 1.02563 1.01950 0.96461 1.21431 0.96380 1.02691 0.93268 1.21690 0.93211 1.06009 0.95707 1.21469 0.92546 0.74920 0.81051 1.90682 1.38316 1.51380 1.66211 1.48278 1.08024 1.69501 1.08869 1.22686 0.86735 0.98326 0.96693 1.23236 0.87746 0.96668 0.96783 1.88023 1.14240 1.93950 1.33713 1.21450 0.86321 0.92915 0.90609 1.22299 1.01194 0.96337 0.97733 1.20811 0.89984 0.95103 0.91100 1.44335 1.27038 1.23390 1.39284 1.20188 1.16845 1.16761 0.95062 0.93690 1.27240 1.08431 0.99945 0.91375 1.70893 1.14001 1.46098 1.27035 0.82861 0.71823 0.75889 0.75502 1.21478 1.20250 1.20646 1.20708 0.97978 0.85861 0.91104 1.21993 0.95530 0.98974 0.98847 1.22109 0.87206 0.97305 0.95923 0.92455 0.93451 0.89339 0.90539 0.93153 0.91511 0.90058 0.93075 0.87314 0.85780 0.88707 0.85457 0.85472 0.93234 0.93020 0.91060 0.94031 0.96455 0.93594 0.97212 0.93823 0.91360 0.89990 0.89726 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.41 -6.49 9.88 -148.98 -1.47 -7.96 16 3 C 0.09 1.12 2.72 30.59 0.08 1.20 16 4 H 0.08 0.69 7.79 -2.39 -0.02 0.67 16 5 C -0.17 -2.12 9.53 71.98 0.69 -1.43 16 6 C -0.10 -1.71 4.21 30.59 0.13 -1.58 16 7 C -0.13 -1.94 3.97 29.85 0.12 -1.82 16 8 C 0.51 12.50 7.71 87.66 0.68 13.18 16 9 O -0.59 -19.69 15.45 -3.04 -0.05 -19.74 16 10 N -0.61 -14.27 2.52 -817.51 -2.06 -16.33 16 11 C 0.08 1.22 6.54 86.35 0.56 1.79 16 12 C 0.03 0.71 6.60 72.08 0.48 1.19 16 13 O -0.38 -12.20 9.00 -148.98 -1.34 -13.54 16 14 C 0.13 4.28 0.68 -10.73 -0.01 4.27 16 15 C -0.14 -5.06 4.33 30.66 0.13 -4.93 16 16 C 0.16 6.97 6.28 86.36 0.54 7.51 16 17 N -0.62 -32.56 2.83 -698.23 -1.97 -34.53 16 18 C -0.36 -21.00 9.48 84.03 0.80 -20.20 16 19 H 0.05 2.66 7.94 -2.91 -0.02 2.63 16 20 C -0.07 -4.30 4.69 84.86 0.40 -3.90 16 21 N -0.94 -58.65 12.45 21.65 0.27 -58.38 16 22 Si 1.12 52.43 29.98 68.60 2.06 54.49 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.17 8.36 4.49 86.51 0.39 8.75 16 27 C -0.11 -4.41 5.12 30.80 0.16 -4.25 16 28 C 0.10 2.81 5.29 86.32 0.46 3.27 16 29 H 0.06 0.34 8.08 -2.39 -0.02 0.32 16 30 H 0.05 0.36 7.87 -2.39 -0.02 0.34 16 31 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.66 7.87 -2.39 -0.02 0.64 16 35 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16 36 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 37 H 0.11 1.53 7.34 -2.39 -0.02 1.51 16 38 H 0.12 1.06 8.01 -2.39 -0.02 1.04 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.13 1.11 6.05 -2.38 -0.01 1.10 16 41 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.05 1.18 6.29 -2.38 -0.02 1.17 16 43 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.07 2.36 6.16 -2.39 -0.01 2.34 16 45 H 0.04 1.90 7.93 -2.39 -0.02 1.88 16 46 H 0.02 0.79 7.83 -2.39 -0.02 0.77 16 47 H 0.25 16.27 6.72 -92.71 -0.62 15.65 16 48 H 0.01 0.51 7.54 -2.38 -0.02 0.49 16 49 H 0.04 2.42 6.38 -2.39 -0.02 2.41 16 50 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 51 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 52 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 53 H 0.08 2.61 7.08 -2.39 -0.02 2.60 16 Total: -1.00 -77.65 402.24 3.27 -74.38 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 1.02 Total: 17.14 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 6.82 Total: 4.48 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -3.77 Total: -109.25 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -2.86 Total: -41.24 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 2.06 Total: 54.49 kcal Total: -77.65 3.27 -74.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485006903.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.917 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds