Wall clock time and date at job start Sat Apr 11 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 114.00247 * 2 1 4 4 H 1.08997 * 109.47411 * 329.99809 * 3 2 1 5 5 C 1.53005 * 109.47052 * 90.00307 * 3 2 1 6 6 C 1.53004 * 109.47271 * 209.99872 * 3 2 1 7 7 C 1.53008 * 109.46750 * 65.00257 * 6 3 2 8 8 C 1.50702 * 109.46870 * 180.02562 * 7 6 3 9 9 O 1.21284 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34769 * 119.99739 * 179.97438 * 8 7 6 11 11 C 1.46934 * 120.64640 * 359.72578 * 10 8 7 12 12 C 1.53618 * 108.53914 * 126.29174 * 11 10 8 13 13 C 1.52992 * 109.27668 * 54.80965 * 12 11 10 14 14 C 1.52990 * 109.63305 * 298.65488 * 13 12 11 15 15 C 1.46934 * 120.64158 * 179.97438 * 10 8 7 16 16 C 1.53256 * 109.36486 * 178.71410 * 13 12 11 17 17 N 1.47146 * 108.41181 * 187.91259 * 16 13 12 18 18 C 1.36938 * 120.98890 * 230.49275 * 17 16 13 19 19 H 1.08007 * 119.99519 * 26.58477 * 18 17 16 20 20 C 1.38812 * 120.00503 * 206.57831 * 18 17 16 21 21 N 1.31614 * 119.99656 * 17.03894 * 20 18 17 22 22 Si 1.86798 * 120.00350 * 197.03354 * 20 18 17 23 23 H 1.48498 * 109.46979 * 94.15459 * 22 20 18 24 24 H 1.48495 * 109.47263 * 214.15628 * 22 20 18 25 25 H 1.48501 * 109.47033 * 334.15648 * 22 20 18 26 26 C 1.47155 * 118.02914 * 50.47473 * 17 16 13 27 27 C 1.53296 * 108.37152 * 309.40737 * 26 17 16 28 28 O 1.42896 * 109.55045 * 58.91343 * 13 12 11 29 29 H 1.08995 * 109.46948 * 59.99698 * 1 2 3 30 30 H 1.08996 * 109.47545 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46841 * 299.99691 * 1 2 3 32 32 H 1.09000 * 109.46965 * 180.02562 * 5 3 2 33 33 H 1.08993 * 109.46717 * 299.99914 * 5 3 2 34 34 H 1.09003 * 109.47163 * 60.00160 * 5 3 2 35 35 H 1.09002 * 109.47318 * 185.00058 * 6 3 2 36 36 H 1.09004 * 109.47056 * 305.00543 * 6 3 2 37 37 H 1.09002 * 109.47048 * 299.99966 * 7 6 3 38 38 H 1.08991 * 109.47130 * 59.99947 * 7 6 3 39 39 H 1.09008 * 109.58299 * 246.12602 * 11 10 8 40 40 H 1.09006 * 109.58591 * 6.54672 * 11 10 8 41 41 H 1.08995 * 109.62670 * 294.80380 * 12 11 10 42 42 H 1.09005 * 109.44735 * 174.69828 * 12 11 10 43 43 H 1.08994 * 109.49136 * 301.24901 * 14 13 12 44 44 H 1.09000 * 109.51327 * 181.18066 * 14 13 12 45 45 H 1.08995 * 109.58680 * 353.43864 * 15 10 8 46 46 H 1.09002 * 109.58699 * 113.72575 * 15 10 8 47 47 H 1.08999 * 109.67689 * 307.64626 * 16 13 12 48 48 H 1.08999 * 109.67505 * 68.18145 * 16 13 12 49 49 H 0.96996 * 120.00234 * 179.97438 * 21 20 18 50 50 H 1.09000 * 109.68104 * 69.12022 * 26 17 16 51 51 H 1.08998 * 109.68700 * 189.68827 * 26 17 16 52 52 H 1.08997 * 109.51580 * 172.27737 * 27 26 17 53 53 H 1.09004 * 109.51467 * 292.37678 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2178 1.7712 1.4426 6 6 3.3590 1.2631 -0.7212 7 6 3.1383 0.9183 -2.1955 8 6 4.4668 0.8761 -2.9058 9 8 5.4894 1.0993 -2.2931 10 7 4.5185 0.5893 -4.2216 11 6 3.2891 0.3097 -4.9761 12 6 3.2418 1.2423 -6.1959 13 6 4.5283 1.0781 -7.0074 14 6 5.7318 1.4689 -6.1476 15 6 5.8059 0.5449 -4.9283 16 6 4.4694 1.9839 -8.2422 17 7 5.6213 1.6719 -9.1030 18 6 6.4415 2.6639 -9.5702 19 1 6.5442 3.5853 -9.0161 20 6 7.1410 2.4853 -10.7558 21 7 6.7803 1.5390 -11.5965 22 14 8.5940 3.5881 -11.1583 23 1 9.8502 2.9344 -10.7113 24 1 8.6500 3.8178 -12.6243 25 1 8.4369 4.8887 -10.4591 26 6 5.8660 0.2621 -9.4465 27 6 5.8596 -0.5588 -8.1519 28 8 4.6601 -0.2822 -7.4248 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.6607 2.7672 1.4425 33 1 1.2570 1.8013 1.9563 34 1 2.8831 1.0773 1.9563 35 1 3.8428 2.2368 -0.6443 36 1 3.9931 0.5049 -0.2617 37 1 2.6544 -0.0554 -2.2725 38 1 2.5042 1.6764 -2.6550 39 1 3.2916 -0.7291 -5.3066 40 1 2.4216 0.4913 -4.3415 41 1 3.1512 2.2762 -5.8630 42 1 2.3843 0.9838 -6.8173 43 1 5.6215 2.5010 -5.8152 44 1 6.6454 1.3712 -6.7341 45 1 6.6002 0.8821 -4.2623 46 1 6.0097 -0.4756 -5.2528 47 1 3.5435 1.8013 -8.7875 48 1 4.5141 3.0284 -7.9336 49 1 7.2688 1.4144 -12.4251 50 1 5.0799 -0.0954 -10.1117 51 1 6.8346 0.1665 -9.9371 52 1 5.9020 -1.6207 -8.3938 53 1 6.7242 -0.2889 -7.5453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503723575.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:31 Heat of formation + Delta-G solvation = -127.030333 kcal Electronic energy + Delta-G solvation = -31547.321017 eV Core-core repulsion = 27418.850310 eV Total energy + Delta-G solvation = -4128.470707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.62946 -40.35554 -39.19686 -37.46552 -36.13327 -34.73353 -33.90095 -32.94963 -32.44054 -30.92064 -29.95969 -28.23914 -27.48997 -26.00911 -25.01262 -24.70645 -23.85684 -22.48309 -21.92391 -20.57103 -19.77426 -18.81549 -18.24022 -17.77021 -17.03397 -16.95064 -16.74295 -16.48102 -16.10900 -16.00336 -15.75322 -15.75189 -15.50683 -15.14569 -14.93253 -14.61720 -14.60371 -14.10540 -13.92770 -13.78384 -13.47498 -13.31817 -13.17955 -13.12148 -13.04505 -12.88386 -12.73040 -12.45862 -12.39018 -12.27076 -12.19607 -12.12773 -12.04319 -12.00859 -11.72579 -11.70186 -11.49254 -11.05389 -10.76049 -10.70523 -10.46974 -10.44043 -9.62329 -8.69432 -7.90401 -5.36796 1.43807 1.45815 1.54171 1.66429 2.03853 2.46167 2.89157 2.93872 3.23535 3.49999 3.54508 3.83026 3.83457 3.91614 3.95692 4.10660 4.15688 4.23997 4.32339 4.39169 4.41042 4.45970 4.53009 4.55662 4.58514 4.59083 4.68212 4.72416 4.74792 4.77854 4.82726 4.83833 4.86037 4.94400 4.95973 5.00744 5.02116 5.06563 5.10278 5.11331 5.24756 5.29558 5.35293 5.36652 5.55829 5.58648 5.62972 6.29860 6.38377 6.42569 6.48811 7.07490 7.20020 7.76751 8.30314 9.14737 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023813 B = 0.002346 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.557741 B =11931.698501 C =12362.022680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.087 3.913 4 H 0.082 0.918 5 C -0.174 4.174 6 C -0.099 4.099 7 C -0.128 4.128 8 C 0.508 3.492 9 O -0.592 6.592 10 N -0.607 5.607 11 C 0.116 3.884 12 C -0.114 4.114 13 C 0.110 3.890 14 C -0.138 4.138 15 C 0.126 3.874 16 C 0.123 3.877 17 N -0.608 5.608 18 C -0.258 4.258 19 H 0.067 0.933 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.269 1.269 26 C 0.148 3.852 27 C 0.050 3.950 28 O -0.377 6.377 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.018 0.982 48 H 0.060 0.940 49 H 0.250 0.750 50 H 0.000 1.000 51 H 0.062 0.938 52 H 0.103 0.897 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.552 -2.373 21.937 26.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.029 3.971 4 H 0.099 0.901 5 C -0.232 4.232 6 C -0.137 4.137 7 C -0.167 4.167 8 C 0.299 3.701 9 O -0.473 6.473 10 N -0.340 5.340 11 C -0.006 4.006 12 C -0.152 4.152 13 C 0.069 3.931 14 C -0.176 4.176 15 C 0.002 3.998 16 C -0.003 4.003 17 N -0.332 5.332 18 C -0.388 4.388 19 H 0.085 0.915 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.793 3.207 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.194 1.194 26 C 0.022 3.978 27 C -0.028 4.028 28 O -0.297 6.297 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.036 0.964 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.018 0.982 51 H 0.080 0.920 52 H 0.121 0.879 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.993 -2.576 22.137 26.316 hybrid contribution 1.282 0.850 -1.192 1.946 sum -12.711 -1.726 20.945 24.562 Atomic orbital electron populations 1.22946 0.79894 1.03516 1.00866 1.87918 1.21047 1.28478 1.95224 1.22193 0.94175 0.84780 0.95940 0.90053 1.22268 1.02549 1.01926 0.96453 1.21421 0.96266 1.02644 0.93323 1.21689 0.93386 1.06023 0.95618 1.21421 0.92421 0.74875 0.81396 1.90659 1.38340 1.51843 1.66477 1.48262 1.08315 1.68762 1.08639 1.21945 0.86233 0.99736 0.92672 1.21975 0.95741 1.01328 0.96151 1.21851 0.95758 0.82708 0.92812 1.22181 0.99850 0.99609 0.95979 1.21294 0.86227 0.99499 0.92737 1.21700 0.89542 0.97837 0.91189 1.44267 1.29058 1.02451 1.57466 1.19458 1.19271 0.97904 1.02125 0.91537 1.25751 1.03199 1.00369 0.95194 1.70176 1.41104 1.36712 1.10051 0.85284 0.79822 0.78948 0.76599 1.21320 1.22167 1.19376 1.21231 0.99570 0.83494 0.93482 1.23105 0.87236 0.99755 0.92657 1.87783 1.41544 1.26866 1.73461 0.92662 0.89132 0.93527 0.90724 0.91579 0.92910 0.90376 0.92691 0.87063 0.86282 0.90582 0.86145 0.89079 0.88682 0.91523 0.91753 0.90913 0.91676 0.96367 0.92144 0.94038 0.98239 0.92003 0.87948 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.41 -6.32 9.88 -148.98 -1.47 -7.79 16 3 C 0.09 1.14 2.72 30.60 0.08 1.23 16 4 H 0.08 0.75 7.79 -2.39 -0.02 0.73 16 5 C -0.17 -2.13 9.53 71.98 0.69 -1.44 16 6 C -0.10 -1.72 4.21 30.60 0.13 -1.59 16 7 C -0.13 -2.06 3.94 29.85 0.12 -1.94 16 8 C 0.51 12.86 7.70 87.66 0.67 13.53 16 9 O -0.59 -20.04 15.40 -3.04 -0.05 -20.08 16 10 N -0.61 -14.97 2.97 -818.09 -2.43 -17.40 16 11 C 0.12 2.19 6.13 86.50 0.53 2.72 16 12 C -0.11 -2.55 5.12 30.80 0.16 -2.39 16 13 C 0.11 3.51 0.68 -10.71 -0.01 3.50 16 14 C -0.14 -4.48 4.33 30.64 0.13 -4.35 16 15 C 0.13 3.72 6.19 86.35 0.53 4.25 16 16 C 0.12 4.94 5.39 86.34 0.47 5.40 16 17 N -0.61 -29.98 2.55 -697.62 -1.78 -31.76 16 18 C -0.26 -13.94 9.64 84.03 0.81 -13.13 16 19 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 20 C -0.05 -2.75 4.94 84.86 0.42 -2.33 16 21 N -0.93 -54.82 11.17 21.65 0.24 -54.58 16 22 Si 0.97 44.72 29.59 68.60 2.03 46.75 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 C 0.15 7.08 5.44 86.35 0.47 7.55 16 27 C 0.05 1.88 6.60 72.08 0.48 2.36 16 28 O -0.38 -13.05 9.00 -148.98 -1.34 -14.39 16 29 H 0.05 0.36 8.08 -2.39 -0.02 0.34 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.35 7.87 -2.39 -0.02 0.33 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.66 7.87 -2.39 -0.02 0.65 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 37 H 0.11 1.58 7.61 -2.39 -0.02 1.56 16 38 H 0.12 1.26 7.71 -2.39 -0.02 1.24 16 39 H 0.08 1.54 7.82 -2.38 -0.02 1.53 16 40 H 0.12 1.36 5.94 -2.38 -0.01 1.35 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 42 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.06 2.47 6.16 -2.39 -0.01 2.46 16 45 H 0.07 2.36 7.01 -2.39 -0.02 2.34 16 46 H 0.06 1.96 7.83 -2.39 -0.02 1.94 16 47 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.06 2.36 7.95 -2.39 -0.02 2.34 16 49 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 50 H 0.00 -0.03 8.14 -2.39 -0.02 -0.04 16 51 H 0.06 3.32 6.17 -2.39 -0.01 3.30 16 52 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 53 H 0.05 1.71 6.29 -2.38 -0.02 1.70 16 Total: -1.00 -70.62 403.03 2.98 -67.64 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.87 Total: 16.80 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 6.91 Total: 14.82 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -3.96 Total: -103.73 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -2.86 Total: -42.27 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -70.62 2.98 -67.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503723575.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.393 kcal (2) G-P(sol) polarization free energy of solvation -70.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds