Wall clock time and date at job start Sat Apr 11 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47369 * 2 1 4 4 N 1.46503 * 109.46925 * 119.99823 * 2 1 3 5 5 C 1.36939 * 119.99691 * 274.99899 * 4 2 1 6 6 H 1.08000 * 120.00376 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99818 * 180.02562 * 5 4 2 8 8 N 1.31615 * 119.99955 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99986 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46985 * 89.99931 * 9 7 5 11 11 H 1.48493 * 109.47034 * 210.00249 * 9 7 5 12 12 H 1.48504 * 109.46895 * 330.00061 * 9 7 5 13 13 C 1.52998 * 109.46989 * 239.99607 * 2 1 3 14 14 H 1.09001 * 109.55475 * 184.87773 * 13 2 1 15 15 C 1.53289 * 109.51400 * 64.74762 * 13 2 1 16 16 N 1.47157 * 108.38491 * 187.77009 * 15 13 2 17 17 C 1.34773 * 120.98280 * 230.50820 * 16 15 13 18 18 O 1.21278 * 120.00191 * 0.03280 * 17 16 15 19 19 C 1.50703 * 119.99881 * 180.02562 * 17 16 15 20 20 O 1.42903 * 109.46816 * 180.02562 * 19 17 16 21 21 C 1.42903 * 113.99658 * 180.02562 * 20 19 17 22 22 C 1.53002 * 109.46905 * 179.97438 * 21 20 19 23 23 C 1.54267 * 110.03446 * 292.90432 * 22 21 20 24 24 C 1.54961 * 104.16155 * 217.13775 * 23 22 21 25 25 C 1.54898 * 102.77769 * 37.88749 * 24 23 22 26 26 C 1.53877 * 110.03067 * 175.68747 * 22 21 20 27 27 C 1.47155 * 118.03509 * 50.54082 * 16 15 13 28 28 C 1.53295 * 108.37983 * 309.45990 * 27 16 15 29 29 O 1.42962 * 109.51459 * 304.99814 * 13 2 1 30 30 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47074 * 300.00453 * 1 2 3 32 32 H 1.08998 * 109.46645 * 60.00628 * 1 2 3 33 33 H 0.96996 * 120.00321 * 95.00045 * 4 2 1 34 34 H 0.96997 * 119.99953 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.68372 * 68.05116 * 15 13 2 36 36 H 1.08996 * 109.71499 * 307.51211 * 15 13 2 37 37 H 1.08993 * 109.47438 * 300.00916 * 19 17 16 38 38 H 1.09005 * 109.46654 * 60.00940 * 19 17 16 39 39 H 1.09000 * 109.47126 * 299.99425 * 21 20 19 40 40 H 1.08998 * 109.47672 * 59.99871 * 21 20 19 41 41 H 1.09006 * 110.01796 * 54.30058 * 22 21 20 42 42 H 1.09004 * 110.48225 * 335.78450 * 23 22 21 43 43 H 1.09002 * 110.48628 * 98.42662 * 23 22 21 44 44 H 1.08997 * 110.72091 * 279.57431 * 24 23 22 45 45 H 1.08992 * 110.76591 * 156.21694 * 24 23 22 46 46 H 1.08997 * 110.48698 * 203.41022 * 25 24 23 47 47 H 1.08997 * 110.59722 * 80.81693 * 25 24 23 48 48 H 1.09003 * 110.03302 * 238.56882 * 26 22 21 49 49 H 1.08997 * 110.03065 * 359.94917 * 26 22 21 50 50 H 1.08993 * 109.68045 * 189.74357 * 27 16 15 51 51 H 1.08996 * 109.68155 * 69.18131 * 27 16 15 52 52 H 1.09000 * 109.51562 * 292.38058 * 28 27 16 53 53 H 1.08997 * 109.51092 * 172.22516 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8927 1.0406 2.4241 7 6 2.6123 -0.6616 3.5091 8 7 2.7375 -0.0050 4.6429 9 14 3.0565 -2.4740 3.4254 10 1 4.4891 -2.6162 3.0609 11 1 2.8175 -3.1039 4.7487 12 1 2.2161 -3.1427 2.3997 13 6 2.0400 -0.7213 -1.2492 14 1 3.1265 -0.7984 -1.2080 15 6 1.6296 0.0662 -2.4986 16 7 1.9649 -0.7376 -3.6848 17 6 2.6674 -0.2080 -4.7058 18 8 3.0336 0.9471 -4.6552 19 6 2.9981 -1.0512 -5.9103 20 8 3.7434 -0.2713 -6.8475 21 6 4.1091 -0.9806 -8.0330 22 6 4.8982 -0.0531 -8.9592 23 6 3.9830 1.0716 -9.4857 24 6 4.4484 1.2857 -10.9482 25 6 4.7580 -0.1556 -11.4237 26 6 5.3912 -0.8328 -10.1908 27 6 1.5098 -2.1365 -3.7236 28 6 1.9262 -2.8167 -2.4144 29 8 1.4706 -2.0312 -1.3102 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 2.2491 -1.6317 1.1528 34 1 3.0608 -0.4622 5.4350 35 1 2.1709 1.0117 -2.5310 36 1 0.5569 0.2580 -2.4764 37 1 3.5918 -1.9110 -5.6000 38 1 2.0752 -1.3961 -6.3767 39 1 4.7255 -1.8393 -7.7670 40 1 3.2092 -1.3235 -8.5435 41 1 5.7461 0.3751 -8.4244 42 1 2.9394 0.7578 -9.4597 43 1 4.1232 1.9819 -8.9028 44 1 5.3453 1.9042 -10.9809 45 1 3.6515 1.7270 -11.5467 46 1 5.4632 -0.1400 -12.2546 47 1 3.8410 -0.6694 -11.7123 48 1 6.4782 -0.7824 -10.2542 49 1 5.0690 -1.8722 -10.1281 50 1 1.9719 -2.6495 -4.5669 51 1 0.4250 -2.1669 -3.8243 52 1 3.0123 -2.9013 -2.3774 53 1 1.4809 -3.8102 -2.3628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506838936.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:50 Heat of formation + Delta-G solvation = -139.343169 kcal Electronic energy + Delta-G solvation = -30281.936747 eV Core-core repulsion = 26152.932115 eV Total energy + Delta-G solvation = -4129.004632 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.55357 -40.03821 -39.41688 -37.79553 -37.27223 -35.80384 -34.38676 -32.46913 -31.54961 -30.24100 -29.77674 -29.47199 -27.69451 -26.22077 -25.18069 -24.68397 -23.50387 -21.55633 -21.41342 -20.76666 -20.22216 -19.76825 -18.60201 -17.91514 -17.50326 -17.28358 -17.02673 -16.69495 -16.52597 -16.26780 -15.95898 -15.87650 -15.65690 -15.40280 -14.89687 -14.67735 -14.48864 -14.31191 -14.21921 -14.09524 -13.86565 -13.50284 -13.23667 -13.12707 -12.93054 -12.77918 -12.48346 -12.37575 -12.16199 -12.10896 -11.98036 -11.91278 -11.83449 -11.75631 -11.70491 -11.59651 -11.49585 -11.33147 -11.20820 -10.98528 -10.81286 -10.65448 -9.65127 -9.32650 -8.01778 -5.34773 1.37634 1.40252 1.44128 1.48960 1.54295 2.49036 2.71360 2.76318 3.30381 3.37931 3.45389 3.69380 3.72595 3.84966 3.89130 3.91197 3.96267 4.03457 4.13399 4.18027 4.28714 4.32880 4.35400 4.40773 4.44313 4.50527 4.56639 4.59106 4.62015 4.68313 4.74247 4.78577 4.81361 4.84303 4.91492 4.94669 5.04291 5.06380 5.08894 5.20373 5.24064 5.25296 5.34630 5.46459 5.47859 5.57914 5.76929 6.04995 6.17869 6.24199 6.29246 7.02091 7.08244 7.84117 8.04940 9.19632 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.001919 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.096783 B =14584.524654 C =14681.822120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.178 3.822 3 H 0.057 0.943 4 N -0.746 5.746 5 C -0.229 4.229 6 H 0.058 0.942 7 C -0.065 4.065 8 N -0.984 5.984 9 Si 0.954 3.046 10 H -0.280 1.280 11 H -0.295 1.295 12 H -0.252 1.252 13 C 0.090 3.910 14 H 0.048 0.952 15 C 0.092 3.908 16 N -0.612 5.612 17 C 0.508 3.492 18 O -0.574 6.574 19 C 0.051 3.949 20 O -0.397 6.397 21 C 0.065 3.935 22 C -0.095 4.095 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.113 4.113 27 C 0.072 3.928 28 C 0.034 3.966 29 O -0.382 6.382 30 H 0.056 0.944 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.368 0.632 34 H 0.257 0.743 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.130 0.870 51 H 0.098 0.902 52 H 0.052 0.948 53 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 -10.127 -36.539 37.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.070 3.930 3 H 0.075 0.925 4 N -0.390 5.390 5 C -0.360 4.360 6 H 0.076 0.924 7 C -0.256 4.256 8 N -0.634 5.634 9 Si 0.781 3.219 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.176 1.176 13 C 0.030 3.970 14 H 0.066 0.934 15 C -0.031 4.031 16 N -0.348 5.348 17 C 0.297 3.703 18 O -0.453 6.453 19 C -0.028 4.028 20 O -0.317 6.317 21 C -0.011 4.011 22 C -0.114 4.114 23 C -0.154 4.154 24 C -0.166 4.166 25 C -0.160 4.160 26 C -0.151 4.151 27 C -0.049 4.049 28 C -0.043 4.043 29 O -0.301 6.301 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.201 0.799 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.148 0.852 51 H 0.116 0.884 52 H 0.070 0.930 53 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.225 -9.221 -36.235 37.391 hybrid contribution 0.559 -0.548 0.880 1.178 sum 0.334 -9.769 -35.355 36.682 Atomic orbital electron populations 1.22194 0.96405 1.01711 1.00555 1.20397 0.94153 0.94586 0.83860 0.92510 1.42677 1.79969 1.09629 1.06734 1.19050 1.35055 0.94430 0.87443 0.92410 1.25477 1.02416 1.02566 0.95152 1.69882 1.54719 1.37697 1.01122 0.85413 0.78457 0.80965 0.77018 1.20671 1.22204 1.17642 1.22541 0.96408 0.83963 0.94090 0.93393 1.22193 1.02347 0.95076 0.83502 1.48214 1.54727 1.14029 1.17781 1.21075 0.76938 0.87706 0.84563 1.90717 1.53778 1.20183 1.80599 1.22337 0.99096 0.93204 0.88196 1.88002 1.74060 1.39379 1.30233 1.22922 0.99042 0.94632 0.84471 1.21802 0.97858 0.96091 0.95665 1.22368 0.99165 0.97800 0.96114 1.22556 1.01082 0.97602 0.95314 1.22367 1.01125 0.95064 0.97415 1.22121 1.00760 0.99648 0.92571 1.22800 1.02491 0.79433 1.00226 1.23299 0.99842 0.96004 0.85136 1.88036 1.68164 1.25286 1.48637 0.92510 0.94841 0.90982 0.79894 0.93409 0.89987 0.88741 0.87397 0.86850 0.91499 0.91239 0.91934 0.91651 0.93549 0.91786 0.91104 0.90778 0.90895 0.91112 0.90134 0.85243 0.88375 0.92962 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.06 71.98 0.65 -4.51 16 2 C 0.18 6.89 2.77 44.99 0.12 7.01 16 3 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 4 N -0.75 -35.82 4.91 -322.92 -1.58 -37.41 16 5 C -0.23 -13.32 10.41 84.03 0.87 -12.45 16 6 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 7 C -0.06 -3.90 5.50 84.86 0.47 -3.44 16 8 N -0.98 -64.18 13.97 21.65 0.30 -63.87 16 9 Si 0.95 46.65 27.74 68.60 1.90 48.55 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 12 H -0.25 -11.27 6.52 99.48 0.65 -10.62 16 13 C 0.09 2.78 2.61 30.69 0.08 2.86 16 14 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 15 C 0.09 2.47 5.82 86.35 0.50 2.97 16 16 N -0.61 -13.09 3.02 -817.37 -2.47 -15.56 16 17 C 0.51 12.52 7.79 87.66 0.68 13.20 16 18 O -0.57 -20.65 15.97 16.01 0.26 -20.39 16 19 C 0.05 0.75 4.79 71.24 0.34 1.09 16 20 O -0.40 -8.24 9.71 -129.94 -1.26 -9.50 16 21 C 0.07 0.82 4.98 71.98 0.36 1.18 16 22 C -0.10 -1.33 3.19 -10.07 -0.03 -1.36 16 23 C -0.12 -1.80 6.22 31.69 0.20 -1.60 16 24 C -0.13 -1.48 6.91 31.91 0.22 -1.26 16 25 C -0.12 -1.03 6.83 31.67 0.22 -0.82 16 26 C -0.11 -1.01 6.46 31.32 0.20 -0.81 16 27 C 0.07 0.88 6.54 86.35 0.56 1.45 16 28 C 0.03 0.58 6.98 72.08 0.50 1.08 16 29 O -0.38 -10.67 9.24 -148.98 -1.38 -12.05 16 30 H 0.06 1.96 7.56 -2.39 -0.02 1.94 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.99 6.41 -2.39 -0.02 1.97 16 33 H 0.37 17.25 5.44 -92.71 -0.50 16.74 16 34 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 35 H 0.08 2.55 7.08 -2.39 -0.02 2.53 16 36 H 0.09 2.30 6.27 -2.39 -0.01 2.28 16 37 H 0.11 0.96 7.66 -2.39 -0.02 0.94 16 38 H 0.11 0.88 8.02 -2.38 -0.02 0.86 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.61 8.02 -2.39 -0.02 0.59 16 41 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.06 0.99 7.77 -2.38 -0.02 0.97 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.08 0.49 7.67 -2.39 -0.02 0.47 16 50 H 0.13 0.54 6.05 -2.39 -0.01 0.52 16 51 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 53 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -82.00 410.39 2.04 -79.95 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.32 Total: 25.67 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.96 Total: 4.60 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -3.75 Total: -116.84 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -2.38 Total: -41.94 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.90 Total: 48.55 kcal Total: -82.00 2.04 -79.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506838936.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.392 kcal (2) G-P(sol) polarization free energy of solvation -81.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds