Wall clock time and date at job start Sat Apr 11 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.36945 * 119.99649 * 85.00202 * 4 2 1 6 6 H 1.07997 * 120.00244 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99544 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00617 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99539 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47491 * 90.00011 * 9 7 5 11 11 H 1.48503 * 109.46935 * 209.99973 * 9 7 5 12 12 H 1.48500 * 109.47157 * 329.99526 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 H 1.09002 * 109.51226 * 175.10201 * 13 2 1 15 15 C 1.53299 * 109.50891 * 295.24873 * 13 2 1 16 16 N 1.47154 * 108.38121 * 172.22524 * 15 13 2 17 17 C 1.34772 * 120.97988 * 129.48896 * 16 15 13 18 18 O 1.21288 * 119.99986 * 359.97438 * 17 16 15 19 19 C 1.50704 * 120.00134 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.47213 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47080 * 179.97438 * 20 19 17 22 22 C 1.53182 * 109.54192 * 294.82013 * 21 20 19 23 23 C 1.53109 * 109.15508 * 183.24290 * 22 21 20 24 24 O 1.42897 * 109.48774 * 57.47171 * 23 22 21 25 25 C 1.42901 * 114.10266 * 298.88821 * 24 23 22 26 26 C 1.53090 * 109.41344 * 61.15756 * 25 24 23 27 27 C 1.47154 * 118.03811 * 309.46807 * 16 15 13 28 28 C 1.53298 * 108.38525 * 50.53434 * 27 16 15 29 29 O 1.42952 * 109.51238 * 54.99722 * 13 2 1 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 34 34 H 0.97006 * 120.00607 * 180.02562 * 8 7 5 35 35 H 1.08992 * 109.68658 * 291.95295 * 15 13 2 36 36 H 1.09001 * 109.68134 * 52.50808 * 15 13 2 37 37 H 1.09005 * 109.46791 * 299.99777 * 19 17 16 38 38 H 1.08995 * 109.47232 * 59.99700 * 19 17 16 39 39 H 1.09005 * 109.46784 * 299.99444 * 20 19 17 40 40 H 1.08995 * 109.47542 * 59.99552 * 20 19 17 41 41 H 1.09001 * 109.54400 * 54.99681 * 21 20 19 42 42 H 1.08994 * 109.51966 * 303.05538 * 22 21 20 43 43 H 1.08996 * 109.52506 * 63.24681 * 22 21 20 44 44 H 1.09001 * 109.40276 * 297.48788 * 23 22 21 45 45 H 1.09001 * 109.47997 * 177.50154 * 23 22 21 46 46 H 1.08997 * 109.47986 * 301.17932 * 25 24 23 47 47 H 1.08995 * 109.49171 * 181.14691 * 25 24 23 48 48 H 1.08996 * 109.52302 * 182.48918 * 26 25 24 49 49 H 1.09005 * 109.52559 * 62.29975 * 26 25 24 50 50 H 1.09004 * 109.68217 * 290.81433 * 27 16 15 51 51 H 1.08995 * 109.71480 * 170.27787 * 27 16 15 52 52 H 1.08994 * 109.51480 * 187.77646 * 28 27 16 53 53 H 1.09001 * 109.55281 * 67.64228 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6113 -0.6621 -3.5092 8 7 2.9244 -1.9391 -3.4501 9 14 2.7905 0.2700 -5.1182 10 1 4.1531 0.8541 -5.2029 11 1 2.5794 -0.6610 -6.2557 12 1 1.7812 1.3578 -5.1751 13 6 2.0400 -0.7213 1.2493 14 1 3.1265 -0.7983 1.2072 15 6 1.6295 0.0664 2.4987 16 7 1.9648 -0.7373 3.6849 17 6 2.6674 -0.2077 4.7058 18 8 3.0336 0.9475 4.6550 19 6 2.9980 -1.0507 5.9104 20 6 3.7950 -0.2154 6.9143 21 6 4.1301 -1.0711 8.1375 22 6 2.8377 -1.4494 8.8678 23 6 3.1879 -2.2363 10.1337 24 8 4.0505 -1.4515 10.9595 25 6 5.2945 -1.1095 10.3449 26 6 5.0291 -0.2755 9.0889 27 6 1.5098 -2.1362 3.7237 28 6 1.9261 -2.8166 2.4146 29 8 1.4705 -2.0311 1.3104 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 -1.1526 34 1 3.2477 -2.3965 -4.2421 35 1 2.1708 1.0119 2.5309 36 1 0.5567 0.2576 2.4761 37 1 2.0751 -1.3956 6.3768 38 1 3.5917 -1.9106 5.6002 39 1 4.7178 0.1298 6.4481 40 1 3.2010 0.6442 7.2244 41 1 4.6471 -1.9762 7.8188 42 1 2.2957 -0.5442 9.1414 43 1 2.2171 -2.0636 8.2155 44 1 3.6928 -3.1618 9.8567 45 1 2.2745 -2.4700 10.6807 46 1 5.8269 -2.0202 10.0707 47 1 5.8988 -0.5316 11.0441 48 1 5.9742 -0.0510 8.5944 49 1 4.5327 0.6542 9.3670 50 1 0.4248 -2.1667 3.8244 51 1 1.9712 -2.6496 4.5672 52 1 1.4808 -3.8101 2.3630 53 1 3.0121 -2.9018 2.3771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570992996.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:08 Heat of formation + Delta-G solvation = -151.222209 kcal Electronic energy + Delta-G solvation = -30500.679709 eV Core-core repulsion = 26371.159964 eV Total energy + Delta-G solvation = -4129.519746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.52663 -40.37481 -39.60707 -37.12563 -36.39880 -35.72779 -34.35221 -32.50939 -31.96098 -31.55078 -29.96172 -28.71276 -26.96869 -26.16757 -24.85617 -24.45992 -23.79012 -22.65853 -21.18302 -20.90961 -20.05530 -19.30037 -18.30053 -17.64226 -17.10994 -17.01122 -16.88963 -16.79603 -16.53023 -16.09488 -16.04499 -15.68680 -15.41759 -15.30859 -15.07497 -14.86392 -14.56988 -14.37719 -14.01485 -13.81788 -13.64673 -13.37815 -13.15312 -13.09552 -13.03869 -12.84730 -12.72161 -12.45064 -12.38917 -12.23674 -12.18817 -12.12776 -11.84002 -11.73597 -11.65058 -11.55754 -11.24805 -11.16383 -11.12922 -10.93909 -10.79338 -10.40138 -9.58260 -9.01398 -7.93008 -5.21671 1.46675 1.48463 1.56254 1.57089 1.84571 2.56040 2.79932 3.03204 3.40115 3.42637 3.59912 3.68863 3.79152 3.91880 3.94174 4.00885 4.05014 4.11282 4.14885 4.24131 4.25810 4.34200 4.38778 4.40576 4.46976 4.52034 4.60693 4.63324 4.63871 4.65930 4.81882 4.82800 4.84786 4.86318 4.90863 4.95402 4.97480 5.08220 5.08571 5.17391 5.21374 5.23648 5.29755 5.35215 5.50616 5.50908 5.60950 6.25928 6.28801 6.32753 6.34142 7.09501 7.34880 8.10371 8.35448 9.30404 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025630 B = 0.001893 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.200305 B =14791.271999 C =14995.274746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.175 3.825 3 H 0.055 0.945 4 N -0.732 5.732 5 C -0.240 4.240 6 H 0.076 0.924 7 C -0.078 4.078 8 N -0.969 5.969 9 Si 0.973 3.027 10 H -0.288 1.288 11 H -0.295 1.295 12 H -0.270 1.270 13 C 0.093 3.907 14 H 0.037 0.963 15 C 0.091 3.909 16 N -0.617 5.617 17 C 0.506 3.494 18 O -0.589 6.589 19 C -0.131 4.131 20 C -0.092 4.092 21 C -0.084 4.084 22 C -0.151 4.151 23 C 0.054 3.946 24 O -0.410 6.410 25 C 0.059 3.941 26 C -0.153 4.153 27 C 0.076 3.924 28 C 0.035 3.965 29 O -0.383 6.383 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.061 0.939 47 H 0.097 0.903 48 H 0.078 0.922 49 H 0.059 0.941 50 H 0.093 0.907 51 H 0.132 0.868 52 H 0.129 0.871 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 -4.186 30.135 30.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.066 3.934 3 H 0.073 0.927 4 N -0.372 5.372 5 C -0.372 4.372 6 H 0.094 0.906 7 C -0.270 4.270 8 N -0.619 5.619 9 Si 0.802 3.198 10 H -0.215 1.215 11 H -0.222 1.222 12 H -0.194 1.194 13 C 0.033 3.967 14 H 0.055 0.945 15 C -0.032 4.032 16 N -0.350 5.350 17 C 0.297 3.703 18 O -0.469 6.469 19 C -0.170 4.170 20 C -0.131 4.131 21 C -0.102 4.102 22 C -0.188 4.188 23 C -0.022 4.022 24 O -0.329 6.329 25 C -0.018 4.018 26 C -0.190 4.190 27 C -0.046 4.046 28 C -0.042 4.042 29 O -0.302 6.302 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.119 0.881 46 H 0.079 0.921 47 H 0.115 0.885 48 H 0.097 0.903 49 H 0.078 0.922 50 H 0.111 0.889 51 H 0.150 0.850 52 H 0.147 0.853 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.757 -3.446 30.050 30.257 hybrid contribution 0.605 0.307 -1.565 1.706 sum -0.152 -3.139 28.485 28.658 Atomic orbital electron populations 1.22202 0.96848 1.01210 1.00415 1.20434 0.93942 0.94422 0.84632 0.92677 1.42515 1.78308 1.10448 1.05950 1.19647 1.34973 0.94185 0.88349 0.90616 1.25559 1.03043 0.96916 1.01444 1.69835 1.52564 1.10186 1.29348 0.85150 0.77821 0.77441 0.79412 1.21549 1.22206 1.19439 1.22511 0.95802 0.83924 0.94435 0.94473 1.22169 1.02025 0.95107 0.83934 1.48356 1.54852 1.13745 1.18079 1.21600 0.76100 0.87837 0.84752 1.90687 1.54672 1.20395 1.81143 1.21817 1.04005 0.99112 0.92031 1.21290 0.99638 0.97708 0.94415 1.21193 0.96405 0.98779 0.93864 1.22317 0.97646 1.01397 0.97488 1.22750 0.94501 0.93153 0.91771 1.87902 1.29709 1.72956 1.42371 1.22667 0.85550 0.98769 0.94787 1.22238 1.00800 0.99335 0.96661 1.22715 1.02094 0.79864 0.99900 1.23250 0.99487 0.95987 0.85506 1.88052 1.67967 1.25531 1.48650 0.94506 0.91225 0.93376 0.79253 0.94120 0.89938 0.89197 0.85869 0.86376 0.92810 0.92896 0.89455 0.92187 0.88558 0.92011 0.88127 0.92102 0.88453 0.90306 0.92244 0.88881 0.84985 0.85311 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.34 9.06 71.98 0.65 -4.69 16 2 C 0.17 7.10 2.77 44.99 0.12 7.23 16 3 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 4 N -0.73 -38.11 5.10 -322.94 -1.65 -39.76 16 5 C -0.24 -13.60 9.93 84.03 0.83 -12.76 16 6 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 7 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 8 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 9 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 C 0.09 3.18 2.61 30.70 0.08 3.26 16 14 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 15 C 0.09 2.59 5.82 86.35 0.50 3.10 16 16 N -0.62 -13.95 3.02 -817.33 -2.47 -16.42 16 17 C 0.51 11.85 7.71 87.66 0.68 12.53 16 18 O -0.59 -19.40 15.45 -3.05 -0.05 -19.45 16 19 C -0.13 -1.66 3.83 29.85 0.11 -1.54 16 20 C -0.09 -1.39 3.98 30.59 0.12 -1.27 16 21 C -0.08 -0.88 2.27 -10.67 -0.02 -0.91 16 22 C -0.15 -1.36 5.10 30.69 0.16 -1.20 16 23 C 0.05 0.53 6.84 72.02 0.49 1.03 16 24 O -0.41 -6.29 10.77 -148.98 -1.60 -7.89 16 25 C 0.06 0.67 6.84 72.01 0.49 1.16 16 26 C -0.15 -1.83 5.43 30.68 0.17 -1.66 16 27 C 0.08 1.13 6.54 86.35 0.56 1.69 16 28 C 0.03 0.73 6.99 72.08 0.50 1.24 16 29 O -0.38 -12.45 9.24 -148.98 -1.38 -13.83 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 2.02 6.41 -2.39 -0.02 2.00 16 32 H 0.05 1.83 7.56 -2.38 -0.02 1.81 16 33 H 0.38 21.26 7.58 -92.71 -0.70 20.56 16 34 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 35 H 0.08 2.62 7.08 -2.39 -0.02 2.61 16 36 H 0.09 2.35 6.26 -2.39 -0.01 2.34 16 37 H 0.12 0.88 6.52 -2.38 -0.02 0.87 16 38 H 0.12 0.97 7.66 -2.39 -0.02 0.95 16 39 H 0.05 1.01 8.10 -2.38 -0.02 0.99 16 40 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 41 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.10 0.46 6.74 -2.39 -0.02 0.44 16 44 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 50 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 51 H 0.13 0.87 6.06 -2.39 -0.01 0.85 16 52 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 53 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -76.95 406.88 1.28 -75.67 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.18 Total: 29.63 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 5.93 Total: 3.12 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -3.83 Total: -116.28 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -3.03 Total: -41.17 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -76.95 1.28 -75.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570992996.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.548 kcal (2) G-P(sol) polarization free energy of solvation -76.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds