Wall clock time and date at job start Sat Apr 11 2020 06:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46969 * 2 1 4 4 N 1.46504 * 109.46881 * 120.00189 * 2 1 3 5 5 C 1.34771 * 119.99829 * 275.00243 * 4 2 1 6 6 O 1.21290 * 120.00245 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00130 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.47097 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46695 * 179.97438 * 8 7 5 10 10 O 1.42906 * 109.46669 * 180.02562 * 9 8 7 11 11 C 1.42898 * 113.99496 * 180.02562 * 10 9 8 12 12 C 1.53181 * 109.54689 * 90.44531 * 11 10 9 13 13 C 1.53085 * 109.16601 * 176.84389 * 12 11 10 14 14 O 1.42901 * 109.41781 * 302.39260 * 13 12 11 15 15 C 1.42897 * 114.09924 * 61.15451 * 14 13 12 16 16 C 1.53095 * 109.41710 * 298.84421 * 15 14 13 17 17 C 1.52996 * 109.47177 * 240.00098 * 2 1 3 18 18 C 1.53950 * 113.74037 * 156.67724 * 17 2 1 19 19 N 1.47585 * 86.11478 * 222.04422 * 18 17 2 20 20 C 1.36934 * 134.49132 * 204.63369 * 19 18 17 21 21 H 1.07998 * 119.99699 * 173.48496 * 20 19 18 22 22 C 1.38815 * 119.99919 * 353.48893 * 20 19 18 23 23 N 1.31619 * 120.00115 * 5.06154 * 22 20 19 24 24 Si 1.86801 * 119.99711 * 185.06499 * 22 20 19 25 25 H 1.48497 * 109.47516 * 94.98580 * 24 22 20 26 26 H 1.48499 * 109.47042 * 214.98845 * 24 22 20 27 27 H 1.48503 * 109.47345 * 334.98494 * 24 22 20 28 28 C 1.47586 * 91.01359 * 24.63971 * 19 18 17 29 29 H 1.09004 * 109.47325 * 60.00105 * 1 2 3 30 30 H 1.09005 * 109.47055 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47594 * 299.99822 * 1 2 3 32 32 H 0.96997 * 119.99971 * 95.00527 * 4 2 1 33 33 H 1.08993 * 109.46951 * 59.99849 * 7 5 4 34 34 H 1.09000 * 109.47040 * 299.99701 * 7 5 4 35 35 H 1.09007 * 109.46985 * 60.00503 * 8 7 5 36 36 H 1.08992 * 109.47831 * 299.99730 * 8 7 5 37 37 H 1.08993 * 109.46847 * 60.00556 * 9 8 7 38 38 H 1.08993 * 109.47190 * 300.00033 * 9 8 7 39 39 H 1.08995 * 109.61805 * 330.21663 * 11 10 9 40 40 H 1.09006 * 109.52056 * 296.75142 * 12 11 10 41 41 H 1.09005 * 109.52438 * 56.93455 * 12 11 10 42 42 H 1.09005 * 109.48168 * 182.40323 * 13 12 11 43 43 H 1.09003 * 109.47992 * 62.37163 * 13 12 11 44 44 H 1.09004 * 109.48249 * 178.86315 * 15 14 13 45 45 H 1.08997 * 109.49183 * 58.83586 * 15 14 13 46 46 H 1.09000 * 109.52509 * 297.70634 * 16 15 14 47 47 H 1.09000 * 109.52786 * 177.51300 * 16 15 14 48 48 H 1.09006 * 112.94597 * 288.40621 * 17 2 1 49 49 H 1.08999 * 113.76487 * 336.34675 * 18 17 2 50 50 H 1.08997 * 113.77172 * 107.74571 * 18 17 2 51 51 H 0.96996 * 119.99815 * 179.97438 * 23 22 20 52 52 H 1.08997 * 113.76456 * 221.05555 * 28 19 18 53 53 H 1.09002 * 113.76889 * 89.66198 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1469 -0.0184 2.3571 6 8 1.8580 1.1583 2.4118 7 6 2.6497 -0.7286 3.5875 8 6 2.7016 0.2546 4.7586 9 6 3.2115 -0.4668 6.0079 10 8 3.2594 0.4515 7.1018 11 6 3.7254 -0.1243 8.3239 12 6 5.2468 0.0283 8.4149 13 6 5.7273 -0.5199 9.7610 14 8 5.0648 0.1738 10.8202 15 6 3.6433 0.0279 10.8138 16 6 3.0790 0.5982 9.5099 17 6 2.0400 -0.7212 -1.2492 18 6 3.4667 -0.3145 -1.6606 19 7 2.9584 -0.3119 -3.0462 20 6 3.5330 -0.4676 -4.2794 21 1 2.9118 -0.5277 -5.1608 22 6 4.9138 -0.5484 -4.3966 23 7 5.6655 -0.5756 -3.3165 24 14 5.7051 -0.6183 -6.0872 25 1 6.1046 0.7499 -6.5039 26 1 6.9059 -1.4905 -6.0361 27 1 4.7340 -1.1700 -7.0660 28 6 1.5823 -0.0740 -2.5688 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2490 -1.6318 1.1526 33 1 3.6490 -1.1204 3.3980 34 1 1.9775 -1.5509 3.8326 35 1 1.7023 0.6467 4.9483 36 1 3.3740 1.0766 4.5135 37 1 4.2106 -0.8591 5.8184 38 1 2.5388 -1.2885 6.2529 39 1 3.4625 -1.1816 8.3538 40 1 5.7179 -0.5294 7.6053 41 1 5.5127 1.0824 8.3350 42 1 6.8041 -0.3750 9.8491 43 1 5.4972 -1.5835 9.8234 44 1 3.2186 0.5676 11.6604 45 1 3.3857 -1.0284 10.8901 46 1 3.3010 1.6638 9.4522 47 1 1.9997 0.4481 9.4836 48 1 1.8828 -1.7992 -1.2115 49 1 3.7640 0.6701 -1.2999 50 1 4.2152 -1.0832 -1.4688 51 1 6.6303 -0.6324 -3.3984 52 1 0.8266 -0.6506 -3.1021 53 1 1.3262 0.9814 -2.4750 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675354599.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:23 Heat of formation + Delta-G solvation = -120.229577 kcal Electronic energy + Delta-G solvation = -29149.223356 eV Core-core repulsion = 25021.047551 eV Total energy + Delta-G solvation = -4128.175804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.04450 -40.57477 -39.70315 -38.54219 -36.20494 -34.91426 -34.17831 -33.10160 -32.10521 -31.72586 -29.36778 -28.01930 -26.53816 -25.64406 -25.15677 -24.59245 -23.42221 -22.34952 -21.44284 -21.24318 -20.48359 -18.76572 -18.25261 -17.77370 -17.34857 -17.21447 -16.97417 -16.91383 -16.75996 -16.08999 -15.81793 -15.74741 -15.40089 -15.10600 -14.92192 -14.71394 -14.63567 -14.17292 -14.01353 -13.77276 -13.40954 -13.29879 -13.21056 -13.12403 -13.01511 -12.87786 -12.67946 -12.51973 -12.49217 -12.38621 -12.22611 -11.98422 -11.85641 -11.73002 -11.67506 -11.49834 -11.33627 -11.24289 -10.88890 -10.77146 -10.66179 -10.43727 -9.97371 -8.91973 -7.93513 -5.25899 1.43964 1.46445 1.55032 1.73747 2.18313 2.46278 2.68064 2.96396 3.27389 3.39157 3.68674 3.74766 3.76924 3.84436 3.97201 3.98000 4.02914 4.05260 4.16072 4.25829 4.31327 4.35282 4.46498 4.49097 4.54897 4.56047 4.60021 4.60469 4.67126 4.74245 4.75489 4.76244 4.83255 4.84667 4.88491 5.01960 5.04584 5.09749 5.13495 5.15378 5.19221 5.24757 5.30151 5.34207 5.50538 5.58418 5.69266 5.92605 6.22553 6.30566 6.67808 6.90764 7.37392 7.59455 8.56240 9.24228 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.001601 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.977808 B =17486.357600 C =18816.440305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.158 3.842 3 H 0.053 0.947 4 N -0.712 5.712 5 C 0.506 3.494 6 O -0.592 6.592 7 C -0.127 4.127 8 C -0.099 4.099 9 C 0.064 3.936 10 O -0.405 6.405 11 C 0.084 3.916 12 C -0.179 4.179 13 C 0.062 3.938 14 O -0.406 6.406 15 C 0.063 3.937 16 C -0.154 4.154 17 C -0.107 4.107 18 C 0.170 3.830 19 N -0.644 5.644 20 C -0.236 4.236 21 H 0.085 0.915 22 C -0.068 4.068 23 N -0.953 5.953 24 Si 0.977 3.023 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.264 1.264 28 C 0.127 3.873 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.415 0.585 33 H 0.116 0.884 34 H 0.130 0.870 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.109 0.891 49 H 0.000 1.000 50 H 0.040 0.960 51 H 0.248 0.752 52 H 0.066 0.934 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.589 -6.986 27.702 29.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.052 3.948 3 H 0.071 0.929 4 N -0.363 5.363 5 C 0.295 3.705 6 O -0.473 6.473 7 C -0.166 4.166 8 C -0.137 4.137 9 C -0.012 4.012 10 O -0.325 6.325 11 C 0.027 3.973 12 C -0.217 4.217 13 C -0.014 4.014 14 O -0.325 6.325 15 C -0.013 4.013 16 C -0.192 4.192 17 C -0.127 4.127 18 C 0.045 3.955 19 N -0.371 5.371 20 C -0.365 4.365 21 H 0.103 0.897 22 C -0.261 4.261 23 N -0.602 5.602 24 Si 0.805 3.195 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.188 1.188 28 C 0.002 3.998 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.252 0.748 33 H 0.134 0.866 34 H 0.148 0.852 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.087 0.913 44 H 0.128 0.872 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.107 0.893 48 H 0.127 0.873 49 H 0.018 0.982 50 H 0.058 0.942 51 H 0.057 0.943 52 H 0.084 0.916 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.519 -5.914 27.607 29.217 hybrid contribution 0.996 -0.028 -1.466 1.773 sum -6.522 -5.942 26.140 27.589 Atomic orbital electron populations 1.22034 0.93473 1.03129 1.02012 1.20774 0.94982 0.95654 0.83378 0.92905 1.46014 1.66642 1.14740 1.08925 1.21297 0.76627 0.86935 0.85687 1.90692 1.52315 1.18340 1.85923 1.21554 1.05199 0.99516 0.90377 1.21123 1.01987 0.98029 0.92592 1.22604 1.00954 0.91899 0.85716 1.87930 1.86871 1.38590 1.19140 1.22241 0.93061 0.97760 0.84261 1.22729 0.96739 1.02700 0.99495 1.22673 0.98071 0.95951 0.84726 1.87922 1.20111 1.74068 1.50410 1.22715 0.80182 1.01409 0.97038 1.22313 1.01734 1.01020 0.94086 1.23446 0.96043 1.00663 0.92510 1.22086 0.94163 0.96116 0.83177 1.46376 1.05270 1.83352 1.02066 1.19468 0.90384 1.41769 0.84865 0.89678 1.25674 0.96564 1.02968 1.00903 1.70020 1.03887 1.57860 1.28451 0.85077 0.77933 0.77047 0.79418 1.21865 1.21956 1.18820 1.22709 0.87827 0.97576 0.91674 0.91148 0.90460 0.93340 0.74839 0.86581 0.85200 0.92095 0.93204 0.91966 0.90923 0.90160 0.89743 0.92127 0.87755 0.91287 0.87186 0.91234 0.91971 0.89290 0.87317 0.98203 0.94185 0.94288 0.91607 0.94256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.29 71.98 0.67 -2.93 16 2 C 0.16 4.67 2.42 44.99 0.11 4.78 16 3 H 0.05 1.96 7.37 -2.39 -0.02 1.94 16 4 N -0.71 -17.24 5.08 -442.53 -2.25 -19.49 16 5 C 0.51 13.24 7.79 87.66 0.68 13.93 16 6 O -0.59 -21.38 15.65 -3.06 -0.05 -21.42 16 7 C -0.13 -2.04 5.70 29.85 0.17 -1.87 16 8 C -0.10 -1.98 4.87 30.60 0.15 -1.83 16 9 C 0.06 0.96 5.76 71.98 0.41 1.37 16 10 O -0.41 -7.97 10.00 -148.98 -1.49 -9.46 16 11 C 0.08 1.19 2.70 30.72 0.08 1.27 16 12 C -0.18 -2.45 5.76 30.68 0.18 -2.28 16 13 C 0.06 0.71 6.84 72.01 0.49 1.20 16 14 O -0.41 -6.29 10.77 -148.98 -1.60 -7.90 16 15 C 0.06 0.67 6.84 72.01 0.49 1.16 16 16 C -0.15 -2.03 5.79 30.69 0.18 -1.85 16 17 C -0.11 -3.63 3.50 -10.14 -0.04 -3.67 16 18 C 0.17 8.08 6.98 86.48 0.60 8.69 16 19 N -0.64 -33.16 3.70 -716.74 -2.65 -35.81 16 20 C -0.24 -13.38 10.70 84.03 0.90 -12.48 16 21 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 22 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 23 N -0.95 -58.21 11.51 21.65 0.25 -57.96 16 24 Si 0.98 46.00 29.56 68.60 2.03 48.03 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 28 C 0.13 4.94 7.56 86.48 0.65 5.59 16 29 H 0.07 1.66 7.43 -2.38 -0.02 1.65 16 30 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.41 7.47 8.60 -92.71 -0.80 6.67 16 33 H 0.12 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.41 8.10 -2.38 -0.02 1.39 16 36 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 37 H 0.06 0.77 7.99 -2.39 -0.02 0.75 16 38 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 39 H 0.08 0.81 7.79 -2.39 -0.02 0.79 16 40 H 0.08 0.99 8.00 -2.38 -0.02 0.97 16 41 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 49 H 0.00 0.01 7.96 -2.39 -0.02 -0.01 16 50 H 0.04 2.09 7.35 -2.39 -0.02 2.07 16 51 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 52 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 53 H 0.04 1.52 8.06 -2.39 -0.02 1.50 16 Total: -1.00 -78.84 422.39 0.52 -78.33 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.07 Total: 18.06 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 6.20 Total: 7.63 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -4.65 Total: -113.27 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -3.14 Total: -38.78 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -78.84 0.52 -78.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675354599.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.900 kcal (2) G-P(sol) polarization free energy of solvation -78.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds