Wall clock time and date at job start Sat Apr 11 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47508 * 2 1 4 4 N 1.46505 * 109.47125 * 240.00137 * 2 1 3 5 5 C 1.34773 * 120.00091 * 85.00312 * 4 2 1 6 6 O 1.21283 * 119.99654 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99981 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.47015 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47040 * 179.97438 * 8 7 5 10 10 O 1.42895 * 109.47376 * 179.97438 * 9 8 7 11 11 C 1.42896 * 114.00571 * 179.97438 * 10 9 8 12 12 C 1.53181 * 109.54106 * 90.44472 * 11 10 9 13 13 C 1.53097 * 109.16254 * 176.85381 * 12 11 10 14 14 O 1.42908 * 109.40822 * 302.38706 * 13 12 11 15 15 C 1.42899 * 114.09575 * 61.16398 * 14 13 12 16 16 C 1.53088 * 109.41474 * 298.83191 * 15 14 13 17 17 C 1.53002 * 109.47070 * 120.00304 * 2 1 3 18 18 C 1.53949 * 113.74181 * 281.82062 * 17 2 1 19 19 N 1.47814 * 86.03662 * 222.08347 * 18 17 2 20 20 C 1.36932 * 134.45614 * 204.64290 * 19 18 17 21 21 H 1.08004 * 119.99684 * 179.86730 * 20 19 18 22 22 C 1.38810 * 119.99996 * 359.86690 * 20 19 18 23 23 N 1.31615 * 120.00297 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99802 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47017 * 60.00488 * 24 22 20 26 26 H 1.48499 * 109.46873 * 179.97438 * 24 22 20 27 27 H 1.48489 * 109.47316 * 299.99964 * 24 22 20 28 28 C 1.47585 * 91.05084 * 24.54949 * 19 18 17 29 29 H 1.09003 * 109.46887 * 300.06621 * 1 2 3 30 30 H 1.09001 * 109.46987 * 60.05884 * 1 2 3 31 31 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99571 * 265.00509 * 4 2 1 33 33 H 1.08994 * 109.47611 * 59.99277 * 7 5 4 34 34 H 1.09001 * 109.47087 * 299.99490 * 7 5 4 35 35 H 1.08999 * 109.47045 * 59.99867 * 8 7 5 36 36 H 1.09001 * 109.46855 * 299.99729 * 8 7 5 37 37 H 1.09008 * 109.47332 * 59.99645 * 9 8 7 38 38 H 1.09001 * 109.47338 * 299.99755 * 9 8 7 39 39 H 1.09000 * 109.61615 * 330.22774 * 11 10 9 40 40 H 1.09002 * 109.52126 * 296.75606 * 12 11 10 41 41 H 1.08999 * 109.52865 * 56.94308 * 12 11 10 42 42 H 1.09005 * 109.47737 * 182.40981 * 13 12 11 43 43 H 1.08991 * 109.48180 * 62.36858 * 13 12 11 44 44 H 1.09007 * 109.47404 * 178.85438 * 15 14 13 45 45 H 1.09002 * 109.49308 * 58.82843 * 15 14 13 46 46 H 1.08997 * 109.52510 * 297.71098 * 16 15 14 47 47 H 1.09000 * 109.52163 * 177.51496 * 16 15 14 48 48 H 1.09002 * 112.94558 * 53.41014 * 17 2 1 49 49 H 1.09004 * 113.76339 * 336.34470 * 18 17 2 50 50 H 1.08990 * 113.77111 * 107.74440 * 18 17 2 51 51 H 0.96997 * 120.00457 * 179.97438 * 23 22 20 52 52 H 1.09000 * 113.77098 * 221.15264 * 28 19 18 53 53 H 1.09004 * 113.87564 * 89.76695 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4116 7 6 2.6488 -0.7288 -3.5877 8 6 2.6999 0.2543 -4.7591 9 6 3.2099 -0.4669 -6.0083 10 8 3.2571 0.4510 -7.1024 11 6 3.7232 -0.1246 -8.3244 12 6 2.5336 -0.6712 -9.1198 13 6 3.0330 -1.2146 -10.4611 14 8 3.7087 -0.1756 -11.1726 15 6 4.8576 0.3414 -10.4982 16 6 4.4316 0.9473 -9.1584 17 6 2.0399 -0.7213 1.2492 18 6 1.9744 0.1328 2.5283 19 7 3.3098 -0.4180 2.8417 20 6 4.0193 -0.6146 3.9962 21 1 5.0065 -1.0507 3.9556 22 6 3.4697 -0.2534 5.2186 23 7 2.2669 0.2785 5.2680 24 14 4.4375 -0.5223 6.7937 25 1 5.7079 0.2441 6.7310 26 1 3.6354 -0.0559 7.9531 27 1 4.7386 -1.9680 6.9489 28 6 3.5701 -0.6731 1.4115 29 1 -0.3633 0.5149 0.8894 30 1 -0.3633 0.5129 -0.8905 31 1 -0.3633 -1.0276 0.0005 32 1 2.2489 -1.6318 -1.1526 33 1 1.9760 -1.5506 -3.8326 34 1 3.6480 -1.1213 -3.3986 35 1 3.3726 1.0763 -4.5144 36 1 1.7006 0.6465 -4.9480 37 1 2.5376 -1.2893 -6.2531 38 1 4.2093 -0.8588 -5.8190 39 1 4.4185 -0.9349 -8.1055 40 1 2.0566 -1.4734 -8.5567 41 1 1.8145 0.1289 -9.2959 42 1 2.1851 -1.5659 -11.0493 43 1 3.7210 -2.0413 -10.2849 44 1 5.3243 1.1109 -11.1132 45 1 5.5697 -0.4650 -10.3225 46 1 3.7509 1.7800 -9.3353 47 1 5.3120 1.3025 -8.6229 48 1 1.6175 -1.7193 1.3659 49 1 1.9752 1.2065 2.3401 50 1 1.1954 -0.1777 3.2245 51 1 1.8827 0.5306 6.1222 52 1 4.0626 -1.6259 1.2177 53 1 4.0408 0.1622 0.8929 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675354600.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:26 Heat of formation + Delta-G solvation = -119.811566 kcal Electronic energy + Delta-G solvation = -29078.579046 eV Core-core repulsion = 24950.421368 eV Total energy + Delta-G solvation = -4128.157678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.04894 -40.56909 -39.66283 -38.53408 -36.19976 -34.90519 -34.13651 -33.10039 -32.09931 -31.77682 -29.34928 -27.99935 -26.50579 -25.70792 -25.14961 -24.58562 -23.36847 -22.32306 -21.41805 -21.22681 -20.55840 -18.78494 -18.25016 -17.77641 -17.30929 -17.16257 -16.93803 -16.86322 -16.76363 -16.03425 -15.83847 -15.79809 -15.47042 -15.03158 -14.98017 -14.79655 -14.59171 -14.19552 -13.96859 -13.77248 -13.36804 -13.27880 -13.20039 -13.12398 -13.01662 -12.87102 -12.65204 -12.49775 -12.39583 -12.37375 -12.21260 -12.02258 -11.85185 -11.79296 -11.66496 -11.57196 -11.32941 -11.21337 -10.86014 -10.76375 -10.65704 -10.42597 -9.98461 -8.92434 -7.90628 -5.24365 1.45028 1.48620 1.54799 1.75343 2.17000 2.47407 2.68275 2.96871 3.29515 3.39645 3.66503 3.75465 3.77696 3.87270 3.97824 3.99530 4.04152 4.05997 4.17173 4.26314 4.28295 4.36541 4.44746 4.49969 4.54205 4.57359 4.58523 4.60721 4.67939 4.76329 4.76836 4.77660 4.83813 4.86695 4.87517 4.96829 5.05024 5.10314 5.13347 5.16012 5.20510 5.24821 5.30520 5.31754 5.53497 5.60575 5.66562 5.93764 6.22909 6.31793 6.70036 6.91414 7.39578 7.60718 8.56562 9.26163 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028534 B = 0.001453 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.051085 B =19260.521153 C =19801.141718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.161 3.839 3 H 0.055 0.945 4 N -0.708 5.708 5 C 0.506 3.494 6 O -0.593 6.593 7 C -0.125 4.125 8 C -0.100 4.100 9 C 0.064 3.936 10 O -0.406 6.406 11 C 0.084 3.916 12 C -0.176 4.176 13 C 0.061 3.939 14 O -0.406 6.406 15 C 0.063 3.937 16 C -0.155 4.155 17 C -0.107 4.107 18 C 0.168 3.832 19 N -0.644 5.644 20 C -0.239 4.239 21 H 0.084 0.916 22 C -0.068 4.068 23 N -0.954 5.954 24 Si 0.979 3.021 25 H -0.280 1.280 26 H -0.294 1.294 27 H -0.272 1.272 28 C 0.128 3.872 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.416 0.584 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.008 0.992 50 H 0.046 0.954 51 H 0.249 0.751 52 H 0.065 0.935 53 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.830 -8.930 -32.181 33.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.055 3.945 3 H 0.073 0.927 4 N -0.360 5.360 5 C 0.295 3.705 6 O -0.474 6.474 7 C -0.165 4.165 8 C -0.138 4.138 9 C -0.012 4.012 10 O -0.326 6.326 11 C 0.026 3.974 12 C -0.214 4.214 13 C -0.015 4.015 14 O -0.325 6.325 15 C -0.013 4.013 16 C -0.193 4.193 17 C -0.127 4.127 18 C 0.042 3.958 19 N -0.370 5.370 20 C -0.367 4.367 21 H 0.102 0.898 22 C -0.260 4.260 23 N -0.603 5.603 24 Si 0.807 3.193 25 H -0.206 1.206 26 H -0.221 1.221 27 H -0.198 1.198 28 C 0.004 3.996 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.253 0.747 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.125 0.875 49 H 0.026 0.974 50 H 0.065 0.935 51 H 0.057 0.943 52 H 0.083 0.917 53 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.584 -7.851 -32.037 33.023 hybrid contribution 0.464 0.067 1.727 1.789 sum 2.047 -7.784 -30.311 31.361 Atomic orbital electron populations 1.22028 0.94346 1.02938 1.01604 1.20691 0.94533 0.95761 0.83510 0.92709 1.45954 1.66614 1.14749 1.08702 1.21334 0.76646 0.86920 0.85634 1.90706 1.52257 1.18550 1.85851 1.21550 1.05440 0.99351 0.90134 1.21132 1.01865 0.98162 0.92677 1.22610 1.01117 0.91940 0.85512 1.87929 1.87293 1.38379 1.19000 1.22236 0.95070 0.95948 0.84099 1.22714 0.99004 1.02087 0.97608 1.22699 0.97475 0.89389 0.91979 1.87923 1.43292 1.54885 1.46428 1.22696 0.87417 0.98993 0.92193 1.22314 1.01458 0.98829 0.96678 1.23437 0.96008 1.00304 0.92931 1.22146 0.88281 0.93631 0.91739 1.46421 1.17275 1.72085 1.01248 1.19418 0.98863 1.34226 0.84219 0.89821 1.25645 0.98142 1.01521 1.00740 1.69995 1.16942 1.48624 1.24691 0.85143 0.77387 0.78163 0.78582 1.20646 1.22056 1.19807 1.22671 0.94824 0.98463 0.83691 0.92237 0.93135 0.90560 0.74654 0.85435 0.85953 0.92903 0.92556 0.91330 0.91452 0.90308 0.89384 0.91993 0.87572 0.91377 0.87322 0.91328 0.91900 0.89614 0.87493 0.97423 0.93549 0.94255 0.91712 0.95222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.44 71.98 0.68 -3.41 16 2 C 0.16 4.77 2.29 44.99 0.10 4.87 16 3 H 0.05 2.01 7.48 -2.39 -0.02 2.00 16 4 N -0.71 -15.63 4.94 -442.54 -2.19 -17.82 16 5 C 0.51 12.17 7.79 87.66 0.68 12.85 16 6 O -0.59 -20.61 15.65 -3.04 -0.05 -20.65 16 7 C -0.13 -1.70 5.70 29.85 0.17 -1.53 16 8 C -0.10 -1.81 4.87 30.60 0.15 -1.66 16 9 C 0.06 0.85 5.76 71.98 0.41 1.26 16 10 O -0.41 -7.44 10.00 -148.98 -1.49 -8.93 16 11 C 0.08 1.09 2.70 30.71 0.08 1.17 16 12 C -0.18 -2.03 5.76 30.69 0.18 -1.85 16 13 C 0.06 0.59 6.84 72.01 0.49 1.08 16 14 O -0.41 -5.85 10.77 -148.98 -1.60 -7.46 16 15 C 0.06 0.64 6.84 72.01 0.49 1.14 16 16 C -0.15 -1.97 5.79 30.68 0.18 -1.80 16 17 C -0.11 -3.66 3.35 -10.13 -0.03 -3.69 16 18 C 0.17 7.99 6.98 86.44 0.60 8.60 16 19 N -0.64 -33.13 3.70 -716.06 -2.65 -35.78 16 20 C -0.24 -13.51 10.70 84.03 0.90 -12.61 16 21 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 22 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 23 N -0.95 -58.09 11.39 21.65 0.25 -57.85 16 24 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 28 C 0.13 4.95 8.38 86.49 0.72 5.67 16 29 H 0.06 1.73 8.09 -2.39 -0.02 1.71 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.42 6.27 8.60 -92.71 -0.80 5.47 16 33 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.07 0.63 7.99 -2.38 -0.02 0.61 16 38 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 39 H 0.08 0.73 7.79 -2.39 -0.02 0.71 16 40 H 0.09 0.77 7.99 -2.39 -0.02 0.75 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.11 0.79 8.14 -2.38 -0.02 0.78 16 43 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.11 0.85 8.14 -2.38 -0.02 0.84 16 45 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 49 H 0.01 0.40 8.03 -2.39 -0.02 0.38 16 50 H 0.05 2.45 7.17 -2.39 -0.02 2.43 16 51 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 52 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 53 H 0.03 1.18 8.10 -2.38 -0.02 1.16 16 Total: -1.00 -78.56 423.53 0.64 -77.91 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.07 Total: 16.02 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 6.28 Total: 6.67 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.59 Total: -111.45 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -3.14 Total: -37.04 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -78.56 0.64 -77.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675354600.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.901 kcal (2) G-P(sol) polarization free energy of solvation -78.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds