Wall clock time and date at job start Sat Apr 11 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 113.99932 * 2 1 4 4 C 1.52998 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47053 * 304.99915 * 4 3 2 6 6 C 1.52991 * 109.47452 * 65.00046 * 4 3 2 7 7 C 1.50705 * 109.47157 * 184.99960 * 4 3 2 8 8 O 1.21281 * 119.99525 * 359.97438 * 7 4 3 9 9 N 1.34775 * 120.00143 * 179.97438 * 7 4 3 10 10 C 1.46503 * 119.99988 * 179.97438 * 9 7 4 11 11 C 1.52998 * 109.47002 * 180.02562 * 10 9 7 12 12 H 1.08994 * 110.32907 * 60.78848 * 11 10 9 13 13 C 1.54602 * 110.36643 * 183.14625 * 11 10 9 14 14 C 1.53990 * 103.88610 * 142.70959 * 13 11 10 15 15 C 1.53973 * 104.57673 * 359.87620 * 14 13 11 16 16 O 1.44465 * 110.36718 * 298.54466 * 11 10 9 17 17 C 1.52400 * 110.29257 * 118.40525 * 14 13 11 18 18 C 1.53291 * 109.39331 * 182.43574 * 17 14 13 19 19 N 1.46924 * 108.72435 * 306.31967 * 18 17 14 20 20 C 1.36937 * 120.57245 * 234.15823 * 19 18 17 21 21 H 1.08002 * 119.99699 * 152.45232 * 20 19 18 22 22 C 1.38807 * 120.00390 * 332.45985 * 20 19 18 23 23 N 1.31617 * 120.00219 * 159.34644 * 22 20 19 24 24 Si 1.86803 * 119.99987 * 339.34771 * 22 20 19 25 25 H 1.48505 * 109.47088 * 93.14413 * 24 22 20 26 26 H 1.48496 * 109.47246 * 213.14708 * 24 22 20 27 27 H 1.48498 * 109.46867 * 333.14688 * 24 22 20 28 28 C 1.46936 * 118.85481 * 54.14440 * 19 18 17 29 29 C 1.52409 * 110.27340 * 241.36587 * 14 13 11 30 30 H 1.09004 * 109.47127 * 299.99998 * 1 2 3 31 31 H 1.08998 * 109.47570 * 60.00010 * 1 2 3 32 32 H 1.09006 * 109.47321 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47015 * 60.00438 * 3 2 1 34 34 H 1.09007 * 109.47210 * 300.00039 * 3 2 1 35 35 H 1.09008 * 109.47542 * 300.00229 * 6 4 3 36 36 H 1.09009 * 109.47199 * 59.99692 * 6 4 3 37 37 H 1.09002 * 109.47893 * 179.97438 * 6 4 3 38 38 H 0.96993 * 120.00104 * 0.02562 * 9 7 4 39 39 H 1.09000 * 109.47234 * 300.00406 * 10 9 7 40 40 H 1.08997 * 109.46889 * 60.00382 * 10 9 7 41 41 H 1.09001 * 110.54733 * 261.31039 * 13 11 10 42 42 H 1.09004 * 110.54625 * 24.10842 * 13 11 10 43 43 H 1.09006 * 110.38859 * 217.56244 * 15 14 13 44 44 H 1.08998 * 110.49275 * 95.21704 * 15 14 13 45 45 H 1.08995 * 109.48577 * 302.41724 * 17 14 13 46 46 H 1.09002 * 109.48492 * 62.46260 * 17 14 13 47 47 H 1.09007 * 109.59880 * 186.55030 * 18 17 14 48 48 H 1.08998 * 109.72185 * 66.17073 * 18 17 14 49 49 H 0.96997 * 120.00048 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.59520 * 186.07537 * 28 19 18 51 51 H 1.08995 * 109.72509 * 65.68836 * 28 19 18 52 52 H 1.09007 * 109.48391 * 297.51238 * 29 14 13 53 53 H 1.08998 * 109.48675 * 57.55973 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8513 0.5682 0.8409 6 6 3.9951 0.5370 -1.3082 7 6 4.1480 2.5560 0.1232 8 8 3.4348 3.5337 0.2035 9 7 5.4883 2.6959 0.1446 10 6 6.0838 4.0291 0.2645 11 6 7.6090 3.9083 0.2639 12 1 7.9530 3.4603 -0.6682 13 6 8.2587 5.2961 0.4687 14 6 9.4833 5.0037 1.3553 15 6 9.4375 3.4826 1.5899 16 8 8.0515 3.1228 1.3928 17 6 10.7663 5.3870 0.6277 18 6 11.9735 5.0315 1.5029 19 7 11.7988 5.6534 2.8225 20 6 12.7719 6.4624 3.3456 21 1 12.5075 7.2432 4.0434 22 6 14.0981 6.2792 2.9789 23 7 14.9646 7.2579 3.1326 24 14 14.6530 4.6436 2.2672 25 1 14.5793 4.6983 0.7850 26 1 16.0522 4.3718 2.6837 27 1 13.7684 3.5607 2.7672 28 6 10.5617 5.3924 3.5712 29 6 9.3646 5.7457 2.6813 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.5521 -0.4550 -1.3979 36 1 3.6791 1.1534 -2.1499 37 1 5.0818 0.4513 -1.3089 38 1 6.0586 1.9141 0.0800 39 1 5.7681 4.6451 -0.5776 40 1 5.7559 4.4911 1.1956 41 1 8.5703 5.7174 -0.4871 42 1 7.5696 5.9697 0.9782 43 1 9.7506 3.2455 2.6068 44 1 10.0703 2.9660 0.8683 45 1 10.8269 4.8418 -0.3142 46 1 10.7649 6.4586 0.4282 47 1 12.8851 5.4085 1.0391 48 1 12.0409 3.9494 1.6147 49 1 15.8914 7.1297 2.8767 50 1 10.5424 6.0071 4.4711 51 1 10.5139 4.3390 3.8470 52 1 9.3531 6.8200 2.4969 53 1 8.4412 5.4524 3.1807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699777063.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:41 Heat of formation + Delta-G solvation = -113.577636 kcal Electronic energy + Delta-G solvation = -30620.514760 eV Core-core repulsion = 26492.627406 eV Total energy + Delta-G solvation = -4127.887355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.60089 -40.02969 -38.17863 -37.10814 -34.98153 -34.06808 -33.47892 -31.59414 -30.58502 -30.51008 -27.82305 -27.11926 -26.17331 -25.62683 -24.18091 -23.05929 -22.83354 -21.71606 -20.98335 -20.07757 -18.61373 -17.80213 -16.94978 -16.85355 -16.41122 -16.15221 -15.86898 -15.58571 -15.51004 -15.15373 -15.01714 -14.86308 -14.20394 -13.94688 -13.75047 -13.71149 -13.51309 -13.10474 -13.06148 -12.82953 -12.62285 -12.58235 -12.41543 -12.16392 -11.96020 -11.81868 -11.71950 -11.53030 -11.33945 -11.25081 -11.16052 -10.85814 -10.70116 -10.45957 -10.12078 -10.07381 -10.05792 -9.87321 -9.70135 -9.62905 -9.42828 -9.33572 -8.63984 -6.99496 -5.97550 -3.33294 2.34470 2.67798 3.27754 3.45275 3.47374 3.51420 3.80658 4.27013 4.44784 4.47561 4.49791 4.60792 4.68803 4.83594 4.88119 4.90276 4.93734 4.97397 4.99994 5.05470 5.20660 5.25271 5.26257 5.27272 5.38831 5.39278 5.42084 5.50685 5.54816 5.54887 5.70298 5.77882 5.79864 5.81929 5.89391 5.92861 6.01564 6.11901 6.15823 6.30907 6.35832 6.44546 6.57788 6.63118 6.65069 6.71132 6.83349 6.92195 7.20106 7.91396 7.94012 8.30509 8.91781 9.69544 10.07133 11.18511 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.032124 B = 0.001948 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.424831 B =14372.442916 C =14620.193209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.080 3.920 4 C -0.110 4.110 5 H 0.108 0.892 6 C -0.140 4.140 7 C 0.521 3.479 8 O -0.545 6.545 9 N -0.719 5.719 10 C 0.128 3.872 11 C 0.062 3.938 12 H 0.072 0.928 13 C -0.139 4.139 14 C -0.077 4.077 15 C 0.053 3.947 16 O -0.372 6.372 17 C -0.121 4.121 18 C 0.125 3.875 19 N -0.604 5.604 20 C -0.260 4.260 21 H 0.085 0.915 22 C 0.023 3.977 23 N -0.908 5.908 24 Si 0.882 3.118 25 H -0.289 1.289 26 H -0.303 1.303 27 H -0.271 1.271 28 C 0.146 3.854 29 C -0.119 4.119 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.406 0.594 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.024 0.976 49 H 0.262 0.738 50 H 0.064 0.936 51 H 0.023 0.977 52 H 0.065 0.935 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.883 -13.329 -9.722 29.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.003 3.997 4 C -0.132 4.132 5 H 0.126 0.874 6 C -0.198 4.198 7 C 0.307 3.693 8 O -0.422 6.422 9 N -0.371 5.371 10 C 0.004 3.996 11 C 0.004 3.996 12 H 0.090 0.910 13 C -0.177 4.177 14 C -0.077 4.077 15 C -0.024 4.024 16 O -0.292 6.292 17 C -0.160 4.160 18 C -0.001 4.001 19 N -0.328 5.328 20 C -0.388 4.388 21 H 0.103 0.897 22 C -0.176 4.176 23 N -0.551 5.551 24 Si 0.713 3.287 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.196 1.196 28 C 0.020 3.980 29 C -0.158 4.158 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.241 0.759 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.117 0.883 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.042 0.958 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.041 0.959 52 H 0.084 0.916 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.216 -12.856 -9.516 29.022 hybrid contribution 0.781 -0.820 -0.572 1.269 sum -23.435 -13.676 -10.088 28.949 Atomic orbital electron populations 1.22735 0.80627 1.02748 1.00215 1.87797 1.19970 1.27875 1.95550 1.22219 0.91477 0.84239 1.01743 1.21172 0.95364 0.94640 1.01977 0.87442 1.21735 1.01358 1.01757 0.94950 1.20368 0.82318 0.90777 0.75837 1.90715 1.61009 1.40751 1.49762 1.45871 1.06533 1.10210 1.74485 1.21506 0.90646 0.84369 1.03041 1.23225 0.93121 0.92410 0.90861 0.91006 1.23025 0.97420 0.96279 1.00977 1.21345 0.94746 0.95245 0.96407 1.23647 0.82058 0.93949 1.02700 1.89118 1.26534 1.64255 1.49249 1.22015 0.94704 1.01855 0.97435 1.21366 0.96629 0.95587 0.86526 1.44330 1.17630 1.56549 1.14285 1.18929 0.85614 1.08580 1.25663 0.89731 1.25282 0.95750 0.97366 0.99174 1.69836 1.03959 1.30648 1.50660 0.86959 0.77138 0.86736 0.77892 1.21707 1.23151 1.19596 1.21011 0.85409 0.97668 0.93919 1.21949 0.99030 1.00081 0.94779 0.93925 0.93991 0.89520 0.92230 0.92472 0.90527 0.92193 0.91986 0.75920 0.90167 0.90475 0.90203 0.90222 0.88291 0.92360 0.92749 0.91230 0.90909 0.95798 0.92781 0.91745 0.95889 0.91616 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.42 10.24 -35.23 -0.36 -3.78 16 3 C 0.08 0.70 4.67 37.16 0.17 0.88 16 4 C -0.11 -0.89 2.96 -91.77 -0.27 -1.16 16 5 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.14 -0.90 8.99 37.15 0.33 -0.57 16 7 C 0.52 5.45 7.15 -10.98 -0.08 5.38 16 8 O -0.54 -7.64 15.92 5.56 0.09 -7.55 16 9 N -0.72 -6.67 5.37 -60.29 -0.32 -6.99 16 10 C 0.13 1.29 5.31 -4.04 -0.02 1.27 16 11 C 0.06 0.65 3.37 -25.89 -0.09 0.56 16 12 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 13 C -0.14 -1.58 5.90 -25.37 -0.15 -1.73 16 14 C -0.08 -1.09 0.68 -154.09 -0.11 -1.20 16 15 C 0.05 0.72 5.63 37.66 0.21 0.94 16 16 O -0.37 -4.74 11.20 -35.23 -0.39 -5.14 16 17 C -0.12 -1.97 4.55 -26.89 -0.12 -2.09 16 18 C 0.12 2.57 3.91 -3.66 -0.01 2.56 16 19 N -0.60 -13.80 2.76 -172.19 -0.47 -14.28 16 20 C -0.26 -7.11 10.03 -15.06 -0.15 -7.26 16 21 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 22 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 23 N -0.91 -27.55 13.97 55.49 0.78 -26.77 16 24 Si 0.88 21.97 24.35 -169.99 -4.14 17.83 16 25 H -0.29 -6.92 6.63 56.52 0.37 -6.55 16 26 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 27 H -0.27 -6.59 6.64 56.52 0.38 -6.22 16 28 C 0.15 2.75 6.20 -3.65 -0.02 2.73 16 29 C -0.12 -1.86 4.69 -26.88 -0.13 -1.99 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.56 7.96 -51.93 -0.41 0.15 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.49 7.82 -51.92 -0.41 0.08 16 36 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 38 H 0.41 3.09 7.83 -40.82 -0.32 2.77 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 41 H 0.08 0.83 7.71 -51.93 -0.40 0.43 16 42 H 0.08 0.89 7.43 -51.93 -0.39 0.50 16 43 H 0.10 1.47 5.99 -51.93 -0.31 1.16 16 44 H 0.06 0.78 7.71 -51.93 -0.40 0.38 16 45 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.07 1.68 4.47 -51.92 -0.23 1.45 16 48 H 0.02 0.49 6.42 -51.93 -0.33 0.15 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 50 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 51 H 0.02 0.42 6.44 -51.93 -0.33 0.09 16 52 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 53 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -32.46 401.94 -7.63 -40.09 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -9.45 Total: 0.34 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 0.59 Total: 0.18 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.02 Total: -48.04 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.67 Total: -16.47 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.14 Total: 17.83 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.46 -7.63 -40.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699777063.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.483 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds