Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 113.99932 * 2 1 4 4 C 1.52998 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47053 * 304.99915 * 4 3 2 6 6 C 1.52991 * 109.47452 * 65.00046 * 4 3 2 7 7 C 1.50705 * 109.47157 * 184.99960 * 4 3 2 8 8 O 1.21281 * 119.99525 * 359.97438 * 7 4 3 9 9 N 1.34775 * 120.00143 * 179.97438 * 7 4 3 10 10 C 1.46503 * 119.99988 * 179.97438 * 9 7 4 11 11 C 1.52998 * 109.47002 * 180.02562 * 10 9 7 12 12 H 1.08994 * 110.32907 * 60.78848 * 11 10 9 13 13 C 1.54602 * 110.36643 * 183.14625 * 11 10 9 14 14 C 1.53990 * 103.88610 * 142.70959 * 13 11 10 15 15 C 1.53973 * 104.57673 * 359.87620 * 14 13 11 16 16 O 1.44465 * 110.36718 * 298.54466 * 11 10 9 17 17 C 1.52400 * 110.29257 * 118.40525 * 14 13 11 18 18 C 1.53291 * 109.39331 * 182.43574 * 17 14 13 19 19 N 1.46924 * 108.72435 * 306.31967 * 18 17 14 20 20 C 1.36937 * 120.57245 * 234.15823 * 19 18 17 21 21 H 1.08002 * 119.99699 * 152.45232 * 20 19 18 22 22 C 1.38807 * 120.00390 * 332.45985 * 20 19 18 23 23 N 1.31617 * 120.00219 * 159.34644 * 22 20 19 24 24 Si 1.86803 * 119.99987 * 339.34771 * 22 20 19 25 25 H 1.48505 * 109.47088 * 93.14413 * 24 22 20 26 26 H 1.48496 * 109.47246 * 213.14708 * 24 22 20 27 27 H 1.48498 * 109.46867 * 333.14688 * 24 22 20 28 28 C 1.46936 * 118.85481 * 54.14440 * 19 18 17 29 29 C 1.52409 * 110.27340 * 241.36587 * 14 13 11 30 30 H 1.09004 * 109.47127 * 299.99998 * 1 2 3 31 31 H 1.08998 * 109.47570 * 60.00010 * 1 2 3 32 32 H 1.09006 * 109.47321 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47015 * 60.00438 * 3 2 1 34 34 H 1.09007 * 109.47210 * 300.00039 * 3 2 1 35 35 H 1.09008 * 109.47542 * 300.00229 * 6 4 3 36 36 H 1.09009 * 109.47199 * 59.99692 * 6 4 3 37 37 H 1.09002 * 109.47893 * 179.97438 * 6 4 3 38 38 H 0.96993 * 120.00104 * 0.02562 * 9 7 4 39 39 H 1.09000 * 109.47234 * 300.00406 * 10 9 7 40 40 H 1.08997 * 109.46889 * 60.00382 * 10 9 7 41 41 H 1.09001 * 110.54733 * 261.31039 * 13 11 10 42 42 H 1.09004 * 110.54625 * 24.10842 * 13 11 10 43 43 H 1.09006 * 110.38859 * 217.56244 * 15 14 13 44 44 H 1.08998 * 110.49275 * 95.21704 * 15 14 13 45 45 H 1.08995 * 109.48577 * 302.41724 * 17 14 13 46 46 H 1.09002 * 109.48492 * 62.46260 * 17 14 13 47 47 H 1.09007 * 109.59880 * 186.55030 * 18 17 14 48 48 H 1.08998 * 109.72185 * 66.17073 * 18 17 14 49 49 H 0.96997 * 120.00048 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.59520 * 186.07537 * 28 19 18 51 51 H 1.08995 * 109.72509 * 65.68836 * 28 19 18 52 52 H 1.09007 * 109.48391 * 297.51238 * 29 14 13 53 53 H 1.08998 * 109.48675 * 57.55973 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8513 0.5682 0.8409 6 6 3.9951 0.5370 -1.3082 7 6 4.1480 2.5560 0.1232 8 8 3.4348 3.5337 0.2035 9 7 5.4883 2.6959 0.1446 10 6 6.0838 4.0291 0.2645 11 6 7.6090 3.9083 0.2639 12 1 7.9530 3.4603 -0.6682 13 6 8.2587 5.2961 0.4687 14 6 9.4833 5.0037 1.3553 15 6 9.4375 3.4826 1.5899 16 8 8.0515 3.1228 1.3928 17 6 10.7663 5.3870 0.6277 18 6 11.9735 5.0315 1.5029 19 7 11.7988 5.6534 2.8225 20 6 12.7719 6.4624 3.3456 21 1 12.5075 7.2432 4.0434 22 6 14.0981 6.2792 2.9789 23 7 14.9646 7.2579 3.1326 24 14 14.6530 4.6436 2.2672 25 1 14.5793 4.6983 0.7850 26 1 16.0522 4.3718 2.6837 27 1 13.7684 3.5607 2.7672 28 6 10.5617 5.3924 3.5712 29 6 9.3646 5.7457 2.6813 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.5521 -0.4550 -1.3979 36 1 3.6791 1.1534 -2.1499 37 1 5.0818 0.4513 -1.3089 38 1 6.0586 1.9141 0.0800 39 1 5.7681 4.6451 -0.5776 40 1 5.7559 4.4911 1.1956 41 1 8.5703 5.7174 -0.4871 42 1 7.5696 5.9697 0.9782 43 1 9.7506 3.2455 2.6068 44 1 10.0703 2.9660 0.8683 45 1 10.8269 4.8418 -0.3142 46 1 10.7649 6.4586 0.4282 47 1 12.8851 5.4085 1.0391 48 1 12.0409 3.9494 1.6147 49 1 15.8914 7.1297 2.8767 50 1 10.5424 6.0071 4.4711 51 1 10.5139 4.3390 3.8470 52 1 9.3531 6.8200 2.4969 53 1 8.4412 5.4524 3.1807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699777063.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -137.114252 kcal Electronic energy + Delta-G solvation = -30621.535385 eV Core-core repulsion = 26492.627406 eV Total energy + Delta-G solvation = -4128.907979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59488 -40.93129 -38.85188 -38.44662 -35.92413 -35.04911 -34.68399 -33.29834 -32.02597 -31.64133 -28.64604 -28.19431 -26.82878 -26.49146 -25.75980 -24.41263 -23.84770 -22.90734 -22.12112 -20.85843 -19.98679 -18.71373 -18.46064 -17.70263 -17.23357 -17.05774 -16.88260 -16.81327 -16.53084 -16.24571 -15.95070 -15.83592 -15.56157 -15.20482 -14.86611 -14.82205 -14.58387 -14.40125 -14.24134 -14.03394 -13.67869 -13.58285 -13.35949 -13.17863 -13.15377 -12.90990 -12.55849 -12.45636 -12.38209 -12.35289 -12.29691 -12.20767 -12.04929 -11.86560 -11.63138 -11.55410 -11.12986 -11.10069 -10.86379 -10.69839 -10.68225 -10.58876 -10.14058 -8.90160 -8.16044 -5.47454 1.29354 1.41947 1.50842 1.55457 1.96618 2.41979 2.80794 2.98913 3.06697 3.34868 3.50350 3.60661 3.71816 3.82616 3.86997 3.99252 4.02386 4.13498 4.15912 4.30263 4.33845 4.37320 4.46442 4.49826 4.50544 4.57279 4.62208 4.63758 4.66090 4.71216 4.72567 4.75063 4.83662 4.85015 4.89232 4.89746 4.98974 5.01210 5.05565 5.16565 5.22289 5.25039 5.28047 5.29893 5.38705 5.51461 5.87290 5.88024 6.13077 6.13180 6.47940 6.93518 7.16209 7.64035 8.03750 9.04050 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.032124 B = 0.001948 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.424831 B =14372.442916 C =14620.193209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.082 3.918 4 C -0.105 4.105 5 H 0.118 0.882 6 C -0.135 4.135 7 C 0.520 3.480 8 O -0.585 6.585 9 N -0.710 5.710 10 C 0.130 3.870 11 C 0.069 3.931 12 H 0.095 0.905 13 C -0.133 4.133 14 C -0.077 4.077 15 C 0.056 3.944 16 O -0.379 6.379 17 C -0.112 4.112 18 C 0.118 3.882 19 N -0.618 5.618 20 C -0.249 4.249 21 H 0.047 0.953 22 C -0.037 4.037 23 N -0.959 5.959 24 Si 0.948 3.052 25 H -0.272 1.272 26 H -0.314 1.314 27 H -0.259 1.259 28 C 0.141 3.859 29 C -0.109 4.109 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.416 0.584 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.036 0.964 49 H 0.261 0.739 50 H 0.049 0.951 51 H 0.037 0.963 52 H 0.053 0.947 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.467 -16.016 -11.800 32.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.005 3.995 4 C -0.126 4.126 5 H 0.136 0.864 6 C -0.193 4.193 7 C 0.308 3.692 8 O -0.466 6.466 9 N -0.362 5.362 10 C 0.007 3.993 11 C 0.012 3.988 12 H 0.113 0.887 13 C -0.171 4.171 14 C -0.077 4.077 15 C -0.020 4.020 16 O -0.298 6.298 17 C -0.151 4.151 18 C -0.007 4.007 19 N -0.342 5.342 20 C -0.378 4.378 21 H 0.065 0.935 22 C -0.231 4.231 23 N -0.605 5.605 24 Si 0.777 3.223 25 H -0.198 1.198 26 H -0.243 1.243 27 H -0.183 1.183 28 C 0.016 3.984 29 C -0.148 4.148 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.253 0.747 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.054 0.946 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.055 0.945 52 H 0.072 0.928 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.839 -15.590 -11.613 32.335 hybrid contribution 1.163 0.072 0.147 1.174 sum -24.676 -15.519 -11.466 31.325 Atomic orbital electron populations 1.22933 0.79381 1.04026 1.00703 1.87772 1.21418 1.27633 1.95590 1.22151 0.92149 0.84291 1.00912 1.21161 0.94717 0.93382 1.03383 0.86418 1.21717 1.02391 1.01491 0.93655 1.20754 0.82415 0.91147 0.74916 1.90699 1.61937 1.42203 1.51719 1.45805 1.06325 1.10428 1.73632 1.21440 0.90566 0.84758 1.02584 1.23287 0.92921 0.91597 0.91025 0.88692 1.22971 0.96000 0.97086 1.01083 1.21290 0.95051 0.95687 0.95685 1.23532 0.82875 0.93230 1.02368 1.89121 1.25905 1.64513 1.50300 1.21900 0.93557 1.01551 0.98044 1.21451 0.97687 0.95717 0.85828 1.44437 1.17693 1.56326 1.15793 1.18858 0.86882 1.07868 1.24239 0.93509 1.25927 0.95853 1.00482 1.00862 1.69977 1.04238 1.32749 1.53554 0.85882 0.75906 0.82333 0.78162 1.19822 1.24282 1.18327 1.21168 0.85113 0.98157 0.93959 1.21815 0.97959 0.99635 0.95382 0.93661 0.93324 0.87887 0.93528 0.92937 0.90260 0.92535 0.90348 0.74682 0.89388 0.92146 0.88579 0.90058 0.89573 0.91213 0.89524 0.92497 0.93505 0.94596 0.93032 0.93201 0.94492 0.92823 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.51 10.24 -148.98 -1.53 -8.03 16 3 C 0.08 1.37 4.67 71.98 0.34 1.71 16 4 C -0.11 -1.51 2.96 -11.54 -0.03 -1.54 16 5 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 6 C -0.14 -1.40 8.99 71.98 0.65 -0.75 16 7 C 0.52 10.01 7.15 87.66 0.63 10.63 16 8 O -0.59 -15.96 15.92 -3.03 -0.05 -16.01 16 9 N -0.71 -11.19 5.37 -463.05 -2.49 -13.68 16 10 C 0.13 2.25 5.31 86.38 0.46 2.71 16 11 C 0.07 1.16 3.37 31.14 0.10 1.26 16 12 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 13 C -0.13 -2.53 5.90 31.47 0.19 -2.35 16 14 C -0.08 -1.94 0.68 -51.91 -0.04 -1.97 16 15 C 0.06 1.34 5.63 72.31 0.41 1.75 16 16 O -0.38 -8.20 11.20 -148.98 -1.67 -9.87 16 17 C -0.11 -3.30 4.55 30.49 0.14 -3.16 16 18 C 0.12 4.64 3.91 86.40 0.34 4.98 16 19 N -0.62 -28.05 2.76 -698.70 -1.93 -29.97 16 20 C -0.25 -14.02 10.03 84.03 0.84 -13.18 16 21 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 22 C -0.04 -2.13 5.23 84.86 0.44 -1.69 16 23 N -0.96 -60.24 13.97 21.65 0.30 -59.94 16 24 Si 0.95 45.70 24.35 68.60 1.67 47.37 16 25 H -0.27 -12.20 6.63 99.48 0.66 -11.54 16 26 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 27 H -0.26 -11.80 6.64 99.48 0.66 -11.14 16 28 C 0.14 5.23 6.20 86.39 0.54 5.77 16 29 C -0.11 -3.23 4.69 30.50 0.14 -3.08 16 30 H 0.04 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.05 0.88 7.96 -2.39 -0.02 0.86 16 34 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.08 0.81 7.82 -2.38 -0.02 0.79 16 36 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.08 0.55 7.56 -2.39 -0.02 0.53 16 38 H 0.42 4.84 7.83 -92.71 -0.73 4.12 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 41 H 0.10 1.57 7.71 -2.39 -0.02 1.55 16 42 H 0.08 1.55 7.43 -2.39 -0.02 1.54 16 43 H 0.09 2.29 5.99 -2.38 -0.01 2.28 16 44 H 0.07 1.53 7.71 -2.39 -0.02 1.52 16 45 H 0.09 2.04 8.12 -2.39 -0.02 2.02 16 46 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.05 2.09 4.47 -2.38 -0.01 2.08 16 48 H 0.04 1.34 6.42 -2.39 -0.02 1.33 16 49 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 50 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 51 H 0.04 1.29 6.44 -2.39 -0.02 1.28 16 52 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 53 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -72.41 401.94 0.77 -71.64 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.07 Total: 15.90 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.39 Total: 2.60 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -4.11 Total: -103.59 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -3.24 Total: -33.92 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.67 Total: 47.37 kcal Total: -72.41 0.77 -71.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699777063.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.478 kcal (2) G-P(sol) polarization free energy of solvation -72.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds