Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99991 * 2 1 4 4 C 1.52999 * 109.47553 * 180.02562 * 3 2 1 5 5 C 1.50707 * 110.43241 * 305.22842 * 4 3 2 6 6 O 1.21273 * 120.00257 * 122.61806 * 5 4 3 7 7 N 1.34776 * 119.99500 * 302.62052 * 5 4 3 8 8 C 1.47150 * 120.98596 * 354.74344 * 7 5 4 9 9 C 1.53301 * 108.38444 * 230.55996 * 8 7 5 10 10 O 1.42963 * 109.22223 * 307.69472 * 9 8 7 11 11 C 1.42966 * 114.16356 * 62.57936 * 10 9 8 12 12 H 1.08999 * 109.50823 * 57.34729 * 11 10 9 13 13 C 1.53006 * 109.50601 * 177.49818 * 11 10 9 14 14 H 1.09000 * 109.46442 * 175.00208 * 13 11 10 15 15 C 1.52993 * 109.47552 * 55.00219 * 13 11 10 16 16 N 1.46504 * 109.46917 * 294.99736 * 13 11 10 17 17 C 1.36939 * 119.99760 * 205.00115 * 16 13 11 18 18 H 1.07996 * 119.99927 * 0.02562 * 17 16 13 19 19 C 1.38810 * 119.99914 * 180.02562 * 17 16 13 20 20 N 1.31616 * 120.00098 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00220 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47260 * 59.99498 * 21 19 17 23 23 H 1.48496 * 109.47343 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46849 * 299.99712 * 21 19 17 25 25 C 1.47152 * 120.97975 * 174.76470 * 7 5 4 26 26 C 1.54886 * 110.59707 * 67.83861 * 4 3 2 27 27 C 1.54894 * 102.74702 * 156.68004 * 26 4 3 28 28 C 1.54262 * 104.19735 * 322.05985 * 27 26 4 29 29 C 1.53880 * 106.59665 * 23.60755 * 28 27 26 30 30 H 1.08998 * 109.47043 * 59.99555 * 1 2 3 31 31 H 1.08995 * 109.46888 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46620 * 300.00183 * 1 2 3 33 33 H 1.08998 * 109.47485 * 60.00186 * 3 2 1 34 34 H 1.09003 * 109.47239 * 299.99892 * 3 2 1 35 35 H 1.08999 * 109.67871 * 350.27873 * 8 7 5 36 36 H 1.08993 * 109.68344 * 110.83422 * 8 7 5 37 37 H 1.08999 * 109.50948 * 187.77353 * 9 8 7 38 38 H 1.08995 * 109.51250 * 67.61991 * 9 8 7 39 39 H 1.09000 * 109.46938 * 299.99959 * 15 13 11 40 40 H 1.09006 * 109.47297 * 59.99474 * 15 13 11 41 41 H 1.08996 * 109.47456 * 179.97438 * 15 13 11 42 42 H 0.97002 * 119.99992 * 25.00623 * 16 13 11 43 43 H 0.96999 * 120.00257 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.68394 * 9.71991 * 25 7 5 45 45 H 1.08993 * 109.71549 * 249.18352 * 25 7 5 46 46 H 1.09001 * 110.76119 * 274.99202 * 26 4 3 47 47 H 1.09000 * 110.75857 * 38.36954 * 26 4 3 48 48 H 1.09003 * 110.48576 * 203.37707 * 27 26 4 49 49 H 1.09007 * 110.48498 * 80.73752 * 27 26 4 50 50 H 1.08996 * 110.03607 * 264.32499 * 28 27 26 51 51 H 1.08998 * 110.03574 * 142.89212 * 28 27 26 52 52 H 1.09001 * 110.03281 * 240.71572 * 29 28 27 53 53 H 1.09007 * 110.03027 * 119.28667 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9961 0.3310 1.1526 6 8 4.6621 -0.6610 0.9447 7 7 3.6680 0.6699 2.4151 8 6 2.9600 1.9275 2.7022 9 6 3.7168 2.6659 3.8123 10 8 3.9123 1.7807 4.9178 11 6 4.7132 0.6356 4.6161 12 1 5.6846 0.9591 4.2421 13 6 4.9049 -0.2018 5.8823 14 1 5.4395 -1.1186 5.6340 15 6 3.5381 -0.5526 6.4736 16 7 5.6787 0.5647 6.8621 17 6 6.4072 -0.0876 7.8208 18 1 6.4116 -1.1670 7.8543 19 6 7.1400 0.6386 8.7494 20 7 7.1351 1.9541 8.7083 21 14 8.1343 -0.2511 10.0567 22 1 9.1450 -1.1211 9.4033 23 1 8.8205 0.7439 10.9194 24 1 7.2273 -1.0836 10.8872 25 6 4.0074 -0.2067 3.5473 26 6 4.0349 0.5968 -1.3437 27 6 5.4981 1.1003 -1.4141 28 6 5.4356 2.5274 -0.8317 29 6 4.1876 2.5811 0.0670 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 2.9304 2.5452 1.8046 36 1 1.9444 1.7100 3.0324 37 1 3.1366 3.5300 4.1359 38 1 4.6845 2.9967 3.4353 39 1 3.0035 0.3643 6.7218 40 1 2.9623 -1.1228 5.7445 41 1 3.6747 -1.1494 7.3753 42 1 5.6750 1.5343 6.8318 43 1 7.6468 2.4616 9.3574 44 1 4.6714 -1.0023 3.2094 45 1 3.0976 -0.6397 3.9628 46 1 4.0018 -0.4925 -1.3247 47 1 3.4515 0.9877 -2.1773 48 1 5.8438 1.1248 -2.4475 49 1 6.1483 0.4691 -0.8082 50 1 5.3470 3.2560 -1.6375 51 1 6.3295 2.7294 -0.2417 52 1 3.4934 3.3358 -0.3027 53 1 4.4760 2.8092 1.0932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725322195.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -128.242792 kcal Electronic energy + Delta-G solvation = -32454.372617 eV Core-core repulsion = 28325.849334 eV Total energy + Delta-G solvation = -4128.523283 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.15568 -40.20277 -38.72426 -37.75006 -37.16348 -35.82454 -34.35817 -32.37587 -31.47774 -30.07204 -29.64314 -28.53192 -27.54654 -26.44883 -25.41554 -24.95278 -24.11828 -22.26956 -21.47660 -21.11709 -19.86979 -19.27508 -18.13246 -17.74189 -17.33418 -16.99436 -16.88236 -16.69047 -16.46570 -16.23035 -16.18928 -15.83568 -15.48113 -15.27667 -15.07090 -14.62073 -14.33114 -14.29190 -14.16565 -14.01743 -13.61387 -13.48262 -13.09716 -12.97997 -12.81091 -12.51066 -12.47694 -12.44896 -12.40733 -12.22800 -12.21926 -12.02759 -11.94615 -11.83591 -11.73903 -11.65351 -11.48895 -11.35353 -11.11780 -10.93205 -10.76397 -10.43625 -9.57130 -9.01440 -7.92514 -5.21387 1.46665 1.50029 1.55833 1.59144 1.80447 2.56436 2.72860 2.76422 3.25985 3.40754 3.54727 3.55042 3.62926 3.86430 3.90619 3.97895 3.99452 4.08199 4.17852 4.22382 4.32524 4.37567 4.40349 4.48397 4.50096 4.52079 4.56459 4.58295 4.59665 4.61612 4.68205 4.75635 4.77878 4.81221 4.88011 4.89063 4.94918 5.04561 5.06982 5.07684 5.21021 5.23150 5.27964 5.36311 5.46569 5.50650 5.59802 6.21272 6.23048 6.28833 6.35186 7.11612 7.35219 8.10157 8.35982 9.30789 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.002863 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.720254 B = 9777.446942 C =10295.797710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.065 3.935 4 C -0.081 4.081 5 C 0.533 3.467 6 O -0.580 6.580 7 N -0.612 5.612 8 C 0.065 3.935 9 C 0.037 3.963 10 O -0.380 6.380 11 C 0.094 3.906 12 H 0.037 0.963 13 C 0.176 3.824 14 H 0.054 0.946 15 C -0.146 4.146 16 N -0.732 5.732 17 C -0.243 4.243 18 H 0.075 0.925 19 C -0.075 4.075 20 N -0.968 5.968 21 Si 0.973 3.027 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.278 1.278 25 C 0.095 3.905 26 C -0.091 4.091 27 C -0.129 4.129 28 C -0.122 4.122 29 C -0.117 4.117 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.037 0.963 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.100 0.900 48 H 0.083 0.917 49 H 0.036 0.964 50 H 0.095 0.905 51 H 0.053 0.947 52 H 0.119 0.881 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.731 4.708 -24.557 29.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.011 4.011 4 C -0.084 4.084 5 C 0.323 3.677 6 O -0.459 6.459 7 N -0.345 5.345 8 C -0.057 4.057 9 C -0.041 4.041 10 O -0.299 6.299 11 C 0.035 3.965 12 H 0.055 0.945 13 C 0.067 3.933 14 H 0.072 0.928 15 C -0.206 4.206 16 N -0.372 5.372 17 C -0.374 4.374 18 H 0.093 0.907 19 C -0.267 4.267 20 N -0.619 5.619 21 Si 0.801 3.199 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.204 1.204 25 C -0.029 4.029 26 C -0.129 4.129 27 C -0.167 4.167 28 C -0.159 4.159 29 C -0.155 4.155 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.148 0.852 36 H 0.108 0.892 37 H 0.150 0.850 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.208 0.792 43 H 0.059 0.941 44 H 0.099 0.901 45 H 0.107 0.893 46 H 0.068 0.932 47 H 0.118 0.882 48 H 0.101 0.899 49 H 0.055 0.945 50 H 0.114 0.886 51 H 0.072 0.928 52 H 0.137 0.863 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.270 3.912 -24.387 29.038 hybrid contribution 0.890 -0.226 1.010 1.366 sum -14.379 3.686 -23.377 27.692 Atomic orbital electron populations 1.22885 0.79322 1.03394 1.01210 1.87943 1.21522 1.28454 1.95643 1.22976 0.89473 0.85387 1.03304 1.21751 0.95965 0.96862 0.93803 1.20884 0.77863 0.85073 0.83833 1.90635 1.40578 1.29927 1.84762 1.48121 1.58189 1.22461 1.05705 1.23036 0.96655 0.84963 1.01000 1.23257 1.00241 0.93293 0.87262 1.88050 1.71210 1.34791 1.35804 1.22503 0.92315 0.86950 0.94751 0.94518 1.20410 0.92475 0.92994 0.87419 0.92805 1.22192 0.97487 1.00685 1.00230 1.42500 1.55418 1.05550 1.33731 1.19611 1.20054 0.91600 1.06179 0.90698 1.25545 1.02752 0.96231 1.02196 1.69828 1.47051 1.05702 1.39322 0.85228 0.78571 0.77107 0.78951 1.20539 1.22094 1.20368 1.22147 1.01222 0.93394 0.86146 1.22332 0.96026 1.00092 0.94403 1.22379 0.96554 0.96343 1.01377 1.22146 0.97196 0.97088 0.99506 1.22465 0.98247 0.93465 1.01282 0.92147 0.89756 0.93144 0.90696 0.89126 0.85204 0.89204 0.84960 0.93398 0.93298 0.91394 0.94419 0.79206 0.94071 0.90147 0.89338 0.93161 0.88196 0.89871 0.94498 0.88616 0.92791 0.86282 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.08 10.09 -148.98 -1.50 -9.59 16 3 C 0.06 0.88 4.38 71.98 0.32 1.19 16 4 C -0.08 -1.48 0.35 -51.85 -0.02 -1.50 16 5 C 0.53 15.02 5.83 87.66 0.51 15.53 16 6 O -0.58 -21.63 14.53 -3.01 -0.04 -21.68 16 7 N -0.61 -16.06 3.01 -817.37 -2.46 -18.52 16 8 C 0.07 1.19 4.13 86.36 0.36 1.55 16 9 C 0.04 0.84 6.93 72.08 0.50 1.34 16 10 O -0.38 -12.84 9.24 -148.98 -1.38 -14.22 16 11 C 0.09 3.40 2.61 30.70 0.08 3.48 16 12 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 13 C 0.18 7.39 2.77 44.99 0.12 7.52 16 14 H 0.05 2.29 8.08 -2.39 -0.02 2.27 16 15 C -0.15 -5.48 9.06 71.98 0.65 -4.83 16 16 N -0.73 -38.77 5.10 -322.94 -1.65 -40.42 16 17 C -0.24 -13.95 9.93 84.03 0.83 -13.12 16 18 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 19 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 20 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 21 Si 0.97 47.34 29.55 68.60 2.03 49.37 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 C 0.09 2.94 5.84 86.35 0.50 3.45 16 26 C -0.09 -1.74 5.39 31.89 0.17 -1.57 16 27 C -0.13 -2.47 6.52 31.67 0.21 -2.26 16 28 C -0.12 -1.79 6.80 31.32 0.21 -1.57 16 29 C -0.12 -1.53 4.58 31.32 0.14 -1.38 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.08 0.78 5.10 -2.39 -0.01 0.76 16 34 H 0.09 0.69 8.07 -2.39 -0.02 0.68 16 35 H 0.13 1.53 3.25 -2.39 -0.01 1.52 16 36 H 0.09 1.45 8.05 -2.39 -0.02 1.43 16 37 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 1.15 8.00 -2.39 -0.02 1.13 16 39 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 40 H 0.07 2.07 6.41 -2.38 -0.02 2.06 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.38 21.56 7.58 -92.71 -0.70 20.86 16 43 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.08 2.80 7.06 -2.39 -0.02 2.79 16 45 H 0.09 2.56 6.26 -2.39 -0.01 2.55 16 46 H 0.05 1.30 7.43 -2.39 -0.02 1.29 16 47 H 0.10 1.32 8.01 -2.39 -0.02 1.30 16 48 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.04 0.97 7.60 -2.38 -0.02 0.95 16 50 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.12 0.65 7.84 -2.39 -0.02 0.63 16 53 H 0.07 1.05 5.80 -2.38 -0.01 1.03 16 Total: -1.00 -78.43 399.07 1.79 -76.64 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.20 Total: 33.45 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 6.31 Total: 5.44 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -3.82 Total: -119.42 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -2.92 Total: -45.48 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -78.43 1.79 -76.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725322195.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.599 kcal (2) G-P(sol) polarization free energy of solvation -78.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds