Wall clock time and date at job start Sat Apr 11 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42909 * 113.99864 * 2 1 4 4 H 1.09009 * 109.46635 * 330.00100 * 3 2 1 5 5 C 1.53006 * 109.47144 * 89.99689 * 3 2 1 6 6 C 1.52999 * 109.47260 * 209.99938 * 3 2 1 7 7 C 1.50703 * 109.46793 * 65.00029 * 6 3 2 8 8 O 1.21280 * 120.00134 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99747 * 180.02562 * 7 6 3 10 10 C 1.46496 * 120.00328 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47590 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.33150 * 57.75759 * 11 10 9 13 13 C 1.54607 * 110.37067 * 180.02562 * 11 10 9 14 14 C 1.53991 * 103.88325 * 142.82214 * 13 11 10 15 15 C 1.53963 * 104.58171 * 359.87189 * 14 13 11 16 16 O 1.44472 * 110.45895 * 295.46056 * 11 10 9 17 17 C 1.52409 * 110.26549 * 118.41390 * 14 13 11 18 18 C 1.53296 * 109.41965 * 62.65426 * 17 14 13 19 19 N 1.46928 * 108.72452 * 53.67110 * 18 17 14 20 20 C 1.36940 * 120.58180 * 125.82422 * 19 18 17 21 21 H 1.08005 * 120.00067 * 331.90976 * 20 19 18 22 22 C 1.38806 * 119.99902 * 151.90513 * 20 19 18 23 23 N 1.31628 * 120.00288 * 335.53233 * 22 20 19 24 24 Si 1.86806 * 120.00053 * 155.53100 * 22 20 19 25 25 H 1.48500 * 109.47206 * 180.02562 * 24 22 20 26 26 H 1.48498 * 109.47019 * 300.00020 * 24 22 20 27 27 H 1.48496 * 109.46954 * 60.00060 * 24 22 20 28 28 C 1.46932 * 118.83473 * 306.10003 * 19 18 17 29 29 C 1.52405 * 110.25216 * 241.34752 * 14 13 11 30 30 H 1.09000 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47497 * 300.00106 * 1 2 3 32 32 H 1.08996 * 109.47351 * 59.99913 * 1 2 3 33 33 H 1.09003 * 109.46421 * 60.00326 * 5 3 2 34 34 H 1.08995 * 109.47112 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47297 * 300.00646 * 5 3 2 36 36 H 1.08997 * 109.46712 * 305.00215 * 6 3 2 37 37 H 1.09000 * 109.47054 * 184.99630 * 6 3 2 38 38 H 0.97008 * 119.99714 * 0.02562 * 9 7 6 39 39 H 1.09007 * 109.46764 * 60.00026 * 10 9 7 40 40 H 1.09004 * 109.46989 * 300.00741 * 10 9 7 41 41 H 1.08994 * 110.54374 * 24.22285 * 13 11 10 42 42 H 1.08999 * 110.66352 * 261.48440 * 13 11 10 43 43 H 1.09002 * 110.39639 * 95.17318 * 15 14 13 44 44 H 1.08998 * 110.39306 * 217.56191 * 15 14 13 45 45 H 1.08999 * 109.48385 * 302.66920 * 17 14 13 46 46 H 1.09005 * 109.48122 * 182.63444 * 17 14 13 47 47 H 1.09000 * 109.59135 * 293.90136 * 18 17 14 48 48 H 1.08995 * 109.71610 * 173.52069 * 18 17 14 49 49 H 0.96996 * 119.99496 * 354.24350 * 23 22 20 50 50 H 1.09004 * 109.59508 * 173.67947 * 28 19 18 51 51 H 1.08998 * 109.59430 * 294.14209 * 28 19 18 52 52 H 1.09001 * 109.47781 * 57.34048 * 29 14 13 53 53 H 1.09007 * 109.48365 * 177.36688 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3448 1.9994 -0.5139 5 6 2.2175 1.7715 1.4426 6 6 3.3589 1.2634 -0.7212 7 6 3.1415 0.9238 -2.1733 8 8 2.0186 0.7336 -2.5901 9 7 4.1952 0.8303 -3.0085 10 6 3.9841 0.4995 -4.4199 11 6 5.3328 0.4563 -5.1409 12 1 5.9925 -0.2704 -4.6668 13 6 5.1338 0.1091 -6.6343 14 6 6.1876 0.9685 -7.3570 15 6 6.9002 1.7375 -6.2295 16 8 5.9457 1.7645 -5.1445 17 6 7.1783 0.0774 -8.0968 18 6 6.4382 -0.7220 -9.1753 19 7 5.6900 0.2137 -10.0258 20 6 5.8594 0.2081 -11.3847 21 1 6.7992 -0.1115 -11.8104 22 6 4.8233 0.6129 -12.2149 23 7 3.5775 0.5404 -11.7961 24 14 5.1968 1.2607 -13.9268 25 1 3.9275 1.6241 -14.6064 26 1 6.0638 2.4618 -13.8232 27 1 5.8962 0.2116 -14.7113 28 6 4.7614 1.1598 -9.3922 29 6 5.5088 1.9422 -8.3130 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.8829 1.0776 1.9563 34 1 2.6604 2.7674 1.4425 35 1 1.2568 1.8015 1.9564 36 1 3.9930 0.5053 -0.2617 37 1 3.8426 2.2372 -0.6443 38 1 5.0935 0.9813 -2.6748 39 1 3.3500 1.2576 -4.8798 40 1 3.5001 -0.4741 -4.4965 41 1 4.1298 0.3811 -6.9598 42 1 5.3180 -0.9506 -6.8107 43 1 7.8062 1.2131 -5.9258 44 1 7.1373 2.7513 -6.5521 45 1 7.6460 -0.6098 -7.3917 46 1 7.9446 0.6958 -8.5645 47 1 5.7466 -1.4197 -8.7030 48 1 7.1563 -1.2734 -9.7821 49 1 3.3765 0.1274 -10.9418 50 1 4.3757 1.8510 -10.1417 51 1 3.9359 0.6125 -8.9371 52 1 4.8050 2.5638 -7.7596 53 1 6.2618 2.5752 -8.7826 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733365364.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:47 Heat of formation + Delta-G solvation = -143.732185 kcal Electronic energy + Delta-G solvation = -30763.623827 eV Core-core repulsion = 26634.428873 eV Total energy + Delta-G solvation = -4129.194954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.59105 -40.76755 -38.91086 -38.44441 -35.92629 -35.20710 -33.85453 -32.68710 -31.95416 -31.66271 -29.19302 -28.24661 -27.52557 -26.45605 -25.52057 -24.06948 -22.78088 -22.66517 -22.29570 -21.24804 -19.97346 -19.05460 -18.23742 -17.84355 -17.63990 -16.98179 -16.62861 -16.33691 -16.25739 -16.03803 -15.94505 -15.59646 -15.50018 -15.41169 -15.19769 -14.74898 -14.58038 -14.26658 -13.94311 -13.72134 -13.49175 -13.42457 -13.29629 -13.19502 -12.96994 -12.87415 -12.80418 -12.50782 -12.35553 -12.27248 -12.23763 -12.05322 -11.92734 -11.67496 -11.65461 -11.64634 -11.22300 -11.08697 -10.86301 -10.65407 -10.52420 -10.46748 -10.11882 -8.91712 -8.24539 -5.40794 1.56138 1.63780 1.69246 1.82397 2.15960 2.64839 2.81859 2.88658 3.20295 3.45596 3.54420 3.66312 3.75549 3.81737 3.87195 3.96994 4.06928 4.16135 4.21229 4.31806 4.35499 4.40408 4.46303 4.50053 4.53966 4.57369 4.60811 4.64044 4.67087 4.73107 4.73471 4.77944 4.80878 4.82107 4.90117 4.92415 4.96903 5.04595 5.08892 5.17768 5.21994 5.23717 5.25049 5.31991 5.40506 5.52169 5.82578 5.84374 6.29811 6.38465 6.57665 7.06868 7.29513 7.78355 8.23384 8.99536 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021006 B = 0.002073 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.630219 B =13501.010027 C =14242.828968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.402 6.402 3 C 0.091 3.909 4 H 0.051 0.949 5 C -0.167 4.167 6 C -0.133 4.133 7 C 0.506 3.494 8 O -0.584 6.584 9 N -0.716 5.716 10 C 0.132 3.868 11 C 0.079 3.921 12 H 0.102 0.898 13 C -0.137 4.137 14 C -0.075 4.075 15 C 0.062 3.938 16 O -0.379 6.379 17 C -0.107 4.107 18 C 0.141 3.859 19 N -0.616 5.616 20 C -0.352 4.352 21 H 0.051 0.949 22 C -0.080 4.080 23 N -0.945 5.945 24 Si 1.114 2.886 25 H -0.294 1.294 26 H -0.280 1.280 27 H -0.274 1.274 28 C 0.160 3.840 29 C -0.109 4.109 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.121 0.879 37 H 0.138 0.862 38 H 0.417 0.583 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.058 0.942 47 H 0.018 0.982 48 H 0.048 0.952 49 H 0.253 0.747 50 H 0.037 0.963 51 H 0.003 0.997 52 H 0.060 0.940 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.352 2.223 27.478 28.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.321 6.321 3 C 0.033 3.967 4 H 0.070 0.930 5 C -0.224 4.224 6 C -0.172 4.172 7 C 0.294 3.706 8 O -0.463 6.463 9 N -0.369 5.369 10 C 0.007 3.993 11 C 0.021 3.979 12 H 0.119 0.881 13 C -0.175 4.175 14 C -0.076 4.076 15 C -0.014 4.014 16 O -0.299 6.299 17 C -0.146 4.146 18 C 0.016 3.984 19 N -0.341 5.341 20 C -0.482 4.482 21 H 0.069 0.931 22 C -0.276 4.276 23 N -0.587 5.587 24 Si 0.938 3.062 25 H -0.220 1.220 26 H -0.206 1.206 27 H -0.200 1.200 28 C 0.034 3.966 29 C -0.148 4.148 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.139 0.861 37 H 0.155 0.845 38 H 0.254 0.746 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.077 0.923 47 H 0.036 0.964 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.055 0.945 51 H 0.020 0.980 52 H 0.078 0.922 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.972 2.744 25.946 26.391 hybrid contribution 0.263 -0.733 0.594 0.979 sum 4.235 2.011 26.539 26.950 Atomic orbital electron populations 1.22741 0.80469 1.02961 0.99816 1.87828 1.20621 1.28527 1.95167 1.21991 0.93641 0.84773 0.96342 0.93045 1.22240 1.02958 1.02686 0.94527 1.21934 0.99181 1.06724 0.89364 1.21304 0.84072 0.75706 0.89535 1.90692 1.25308 1.51351 1.78997 1.45843 1.10604 1.71593 1.08814 1.21267 0.95911 1.00855 0.81240 1.23184 0.93498 0.86303 0.94874 0.88065 1.22949 0.99406 1.01059 0.94062 1.21295 0.95531 0.95435 0.95309 1.23526 0.91823 1.01496 0.84589 1.89101 1.55913 1.32285 1.52551 1.21818 0.96908 0.98390 0.97462 1.21114 0.93853 0.91308 0.92121 1.44318 1.49804 1.37454 1.02508 1.20222 0.98037 1.46494 0.83464 0.93130 1.27198 0.92134 1.00963 1.07277 1.70907 1.19320 1.45745 1.22707 0.82875 0.74993 0.76709 0.71613 1.22020 1.20594 1.20021 1.20673 0.91068 0.91316 0.93507 1.21764 0.99355 0.97341 0.96354 0.89428 0.92670 0.95307 0.91086 0.89548 0.92215 0.86062 0.84452 0.74579 0.93220 0.90747 0.92471 0.89651 0.89621 0.88874 0.89103 0.92314 0.96436 0.93330 0.93726 0.94488 0.97952 0.92179 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.82 113.37 1.23 1.91 16 2 O -0.40 -8.89 9.58 -135.18 -1.30 -10.19 16 3 C 0.09 1.51 2.27 30.60 0.07 1.58 16 4 H 0.05 1.01 7.60 -2.38 -0.02 0.99 16 5 C -0.17 -1.68 9.53 71.98 0.69 -1.00 16 6 C -0.13 -1.79 5.41 29.85 0.16 -1.63 16 7 C 0.51 11.41 7.71 87.66 0.68 12.08 16 8 O -0.58 -18.96 15.42 10.77 0.17 -18.79 16 9 N -0.72 -13.78 5.52 -463.06 -2.56 -16.33 16 10 C 0.13 3.14 5.29 86.38 0.46 3.60 16 11 C 0.08 1.70 3.34 31.14 0.10 1.81 16 12 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 13 C -0.14 -3.76 4.97 31.48 0.16 -3.60 16 14 C -0.08 -2.17 0.68 -51.91 -0.04 -2.20 16 15 C 0.06 1.39 6.72 72.31 0.49 1.88 16 16 O -0.38 -8.89 11.31 -148.98 -1.69 -10.58 16 17 C -0.11 -3.17 4.64 30.50 0.14 -3.03 16 18 C 0.14 5.61 6.21 86.40 0.54 6.14 16 19 N -0.62 -30.72 2.84 -699.60 -1.99 -32.71 16 20 C -0.35 -19.83 9.48 84.03 0.80 -19.03 16 21 H 0.05 2.83 7.94 -2.91 -0.02 2.81 16 22 C -0.08 -4.61 4.69 84.86 0.40 -4.21 16 23 N -0.94 -58.88 12.41 21.65 0.27 -58.61 16 24 Si 1.11 51.66 29.98 68.60 2.06 53.71 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 C 0.16 7.64 4.35 86.24 0.38 8.01 16 29 C -0.11 -4.02 4.61 30.34 0.14 -3.88 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 0.77 7.87 -2.39 -0.02 0.75 16 32 H 0.03 0.62 8.08 -2.39 -0.02 0.60 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.61 7.87 -2.39 -0.02 0.59 16 36 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.42 5.43 8.47 -92.70 -0.79 4.65 16 39 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 1.87 6.33 -2.39 -0.02 1.86 16 42 H 0.08 2.28 6.58 -2.39 -0.02 2.26 16 43 H 0.09 1.51 7.83 -2.39 -0.02 1.49 16 44 H 0.09 2.08 7.85 -2.39 -0.02 2.06 16 45 H 0.09 2.06 8.12 -2.39 -0.02 2.04 16 46 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 47 H 0.02 0.70 6.85 -2.39 -0.02 0.68 16 48 H 0.05 1.95 7.93 -2.39 -0.02 1.94 16 49 H 0.25 16.09 6.71 -92.71 -0.62 15.47 16 50 H 0.04 2.04 6.30 -2.38 -0.02 2.03 16 51 H 0.00 0.13 6.59 -2.39 -0.02 0.11 16 52 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 53 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -76.63 407.60 1.59 -75.04 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.25 Total: 20.02 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 6.38 Total: -1.57 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -4.28 Total: -107.65 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -2.81 Total: -39.56 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.06 Total: 53.71 kcal Total: -76.63 1.59 -75.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733365364.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.691 kcal (2) G-P(sol) polarization free energy of solvation -76.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds