Wall clock time and date at job start Sat Apr 11 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.46852 * 2 1 4 4 C 1.46503 * 120.00290 * 270.00168 * 3 2 1 5 5 C 1.50704 * 109.47179 * 270.00119 * 4 3 2 6 6 H 1.08003 * 119.99865 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00139 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00173 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99961 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47135 * 59.99898 * 9 7 5 11 11 H 1.48502 * 109.47157 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47152 * 299.99802 * 9 7 5 13 13 C 1.34780 * 120.00101 * 90.00351 * 3 2 1 14 14 O 1.21283 * 120.00166 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99877 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47228 * 180.02562 * 15 13 3 17 17 C 1.46845 * 111.00136 * 65.78669 * 16 15 13 18 18 C 1.53032 * 109.52579 * 185.83764 * 17 16 15 19 19 C 1.53118 * 109.31433 * 300.84641 * 18 17 16 20 20 C 1.53125 * 109.15746 * 57.58782 * 19 18 17 21 21 H 1.09001 * 109.49595 * 62.37183 * 20 19 18 22 22 C 1.52999 * 109.50211 * 182.44669 * 20 19 18 23 23 C 1.53006 * 109.63020 * 299.92316 * 22 20 19 24 24 O 1.43361 * 109.63410 * 60.31864 * 22 20 19 25 25 C 1.43895 * 107.45174 * 120.35147 * 24 22 20 26 26 C 1.54916 * 103.01571 * 21.54692 * 25 24 22 27 27 O 1.43754 * 109.62990 * 179.53248 * 22 20 19 28 28 C 1.46844 * 111.00095 * 189.99908 * 16 15 13 29 29 H 1.08998 * 109.47663 * 299.99484 * 1 2 3 30 30 H 1.09003 * 109.47749 * 59.99760 * 1 2 3 31 31 H 1.09004 * 109.47430 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47001 * 240.00786 * 2 1 3 33 33 H 1.08996 * 109.47465 * 120.00000 * 2 1 3 34 34 H 1.08997 * 109.47294 * 29.99850 * 4 3 2 35 35 H 1.09001 * 109.47170 * 150.00014 * 4 3 2 36 36 H 0.97001 * 120.00167 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.47146 * 60.00126 * 15 13 3 38 38 H 1.08998 * 109.46668 * 300.00582 * 15 13 3 39 39 H 1.09003 * 109.46389 * 305.86131 * 17 16 15 40 40 H 1.09007 * 109.46088 * 65.83500 * 17 16 15 41 41 H 1.08998 * 109.49965 * 60.76541 * 18 17 16 42 42 H 1.09001 * 109.50608 * 180.87815 * 18 17 16 43 43 H 1.08998 * 109.49133 * 297.70980 * 19 18 17 44 44 H 1.08993 * 109.55906 * 177.51611 * 19 18 17 45 45 H 1.09001 * 109.47002 * 59.99940 * 23 22 20 46 46 H 1.08993 * 109.46955 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.47050 * 300.00206 * 23 22 20 48 48 H 1.08991 * 110.77115 * 263.14632 * 25 24 22 49 49 H 1.09000 * 110.82676 * 139.96442 * 25 24 22 50 50 H 1.09000 * 110.97936 * 206.27978 * 26 25 24 51 51 H 1.09001 * 110.97895 * 82.48831 * 26 25 24 52 52 H 1.09002 * 109.45781 * 54.14476 * 28 16 15 53 53 H 1.08996 * 109.46495 * 294.17758 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2623 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1489 2.3898 -2.8780 8 7 3.3489 3.1259 -3.6181 9 14 5.9129 2.0958 -3.4176 10 1 6.1400 0.6390 -3.5949 11 1 6.1601 2.7950 -4.7042 12 1 6.8408 2.6191 -2.3830 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9913 1.3063 2.4724 16 7 2.3090 2.2064 3.5889 17 6 1.3866 3.3485 3.6231 18 6 1.8344 4.3355 4.7035 19 6 1.8503 3.6275 6.0610 20 6 2.7802 2.4134 5.9838 21 1 3.7964 2.7464 5.7725 22 6 2.7549 1.6649 7.3179 23 6 3.2278 2.5941 8.4377 24 8 1.4211 1.2177 7.5941 25 6 1.4612 -0.2163 7.7058 26 6 2.9498 -0.4998 8.0274 27 8 3.6188 0.5182 7.2447 28 6 2.3049 1.4822 4.8663 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.5816 1.6878 -2.0284 35 1 2.0953 3.1411 -1.1383 36 1 3.6747 3.5159 -4.4443 37 1 2.6212 0.4186 2.5302 38 1 0.9432 1.0124 2.5298 39 1 1.3885 3.8460 2.6532 40 1 0.3801 2.9958 3.8483 41 1 2.8354 4.6992 4.4717 42 1 1.1407 5.1755 4.7392 43 1 0.8418 3.2984 6.3114 44 1 2.2109 4.3144 6.8266 45 1 2.5671 3.4591 8.4954 46 1 3.2092 2.0582 9.3866 47 1 4.2445 2.9269 8.2286 48 1 1.1742 -0.6854 6.7648 49 1 0.8197 -0.5599 8.5173 50 1 3.2373 -1.4979 7.6967 51 1 3.1511 -0.3695 9.0907 52 1 2.9739 0.6242 4.7994 53 1 1.2942 1.1382 5.0856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183911996.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:35 Heat of formation + Delta-G solvation = -141.935966 kcal Electronic energy + Delta-G solvation = -31849.820981 eV Core-core repulsion = 27720.703917 eV Total energy + Delta-G solvation = -4129.117064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.88319 -40.90434 -39.19485 -36.90320 -35.96933 -35.24621 -34.81064 -32.95656 -31.64042 -30.75497 -29.80664 -29.32973 -27.86201 -25.31591 -24.69725 -24.22638 -24.06970 -23.49137 -21.94218 -20.62096 -19.85236 -18.61085 -18.28973 -17.91533 -17.62096 -17.13508 -16.75650 -16.52899 -16.24256 -16.08761 -15.61444 -15.54979 -15.14014 -14.91510 -14.65921 -14.59659 -14.43511 -14.29599 -14.07044 -13.91209 -13.74046 -13.58999 -13.38515 -13.25309 -13.12684 -13.04042 -12.82025 -12.74253 -12.62720 -12.50571 -12.47680 -12.15143 -12.10172 -11.90829 -11.74918 -11.63786 -11.59217 -11.29738 -11.03980 -10.63787 -10.61795 -10.32171 -9.42745 -9.20947 -8.21605 -6.36382 1.35780 1.40670 1.47744 1.87713 2.22291 2.40915 2.48718 2.87078 3.03800 3.07621 3.63950 3.70142 3.73486 3.80595 3.95067 4.04597 4.08691 4.10580 4.18772 4.24096 4.32752 4.35632 4.41431 4.43898 4.51147 4.53902 4.61261 4.63929 4.67694 4.74642 4.77888 4.82291 4.90800 4.92904 4.97233 4.97997 5.01407 5.04100 5.05485 5.12819 5.14637 5.22532 5.33930 5.37163 5.45670 5.59329 5.87211 6.00111 6.08302 6.16562 6.20671 6.71761 6.84628 7.29921 7.55661 8.85145 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.002674 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.021312 B =10466.784633 C =10671.615226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.266 3.734 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.497 3.503 14 O -0.576 6.576 15 C 0.054 3.946 16 N -0.541 5.541 17 C 0.054 3.946 18 C -0.110 4.110 19 C -0.100 4.100 20 C -0.085 4.085 21 H 0.077 0.923 22 C 0.264 3.736 23 C -0.169 4.169 24 O -0.388 6.388 25 C 0.014 3.986 26 C 0.011 3.989 27 O -0.391 6.391 28 C 0.077 3.923 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.021 0.979 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.121 0.879 50 H 0.125 0.875 51 H 0.087 0.913 52 H 0.075 0.925 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 -10.303 27.002 29.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.144 3.856 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.285 3.715 14 O -0.456 6.456 15 C -0.076 4.076 16 N -0.266 5.266 17 C -0.073 4.073 18 C -0.148 4.148 19 C -0.137 4.137 20 C -0.104 4.104 21 H 0.095 0.905 22 C 0.187 3.813 23 C -0.226 4.226 24 O -0.309 6.309 25 C -0.061 4.061 26 C -0.065 4.065 27 O -0.312 6.312 28 C -0.050 4.050 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.039 0.961 35 H 0.012 0.988 36 H 0.076 0.924 37 H 0.134 0.866 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.139 0.861 50 H 0.143 0.857 51 H 0.105 0.895 52 H 0.094 0.906 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.052 -9.318 26.646 28.870 hybrid contribution 0.154 -0.121 -0.881 0.903 sum -5.898 -9.439 25.765 28.067 Atomic orbital electron populations 1.22142 0.94657 1.03472 1.01477 1.21725 0.95226 0.81473 1.03818 1.48292 1.64261 1.15105 1.06155 1.18642 0.95147 0.91386 0.80386 1.21693 0.97947 1.31991 1.06444 0.93018 1.25854 1.02377 0.94472 0.96434 1.70046 1.37817 1.34250 1.14799 0.85484 0.79048 0.79072 0.77307 1.18360 1.20253 1.20489 1.21133 0.77428 0.86741 0.86195 1.90607 1.46925 1.20399 1.87667 1.21923 1.02091 0.95765 0.87859 1.61446 1.53248 1.09250 1.02657 1.22150 0.92686 0.92312 1.00192 1.21512 1.01735 0.97553 0.93970 1.21536 0.99647 0.95712 0.96832 1.21467 1.00888 0.95777 0.92284 0.90492 1.23321 0.76610 0.87217 0.94189 1.22374 1.02595 1.00072 0.97576 1.88812 1.27829 1.21740 1.92532 1.24334 0.97745 0.80501 1.03564 1.24605 0.90641 0.93863 0.97369 1.89284 1.45526 1.23750 1.72626 1.21933 0.99945 0.95897 0.87224 0.92542 0.94261 0.88518 0.90915 0.88431 0.96126 0.98761 0.92426 0.86635 0.90130 0.92313 0.94674 0.92775 0.90146 0.91145 0.89910 0.89788 0.90995 0.90614 0.90639 0.86120 0.85742 0.89476 0.90647 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 10.24 71.98 0.74 -3.29 16 2 C 0.10 3.12 5.93 86.38 0.51 3.63 16 3 N -0.61 -26.54 2.46 -826.15 -2.03 -28.57 16 4 C 0.27 14.81 5.16 85.63 0.44 15.25 16 5 C -0.54 -32.26 9.39 25.60 0.24 -32.02 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 9 Si 0.97 46.17 29.54 68.60 2.03 48.20 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 C 0.50 21.68 7.35 87.66 0.64 22.32 16 14 O -0.58 -31.13 13.91 -3.04 -0.04 -31.18 16 15 C 0.05 1.68 4.00 85.56 0.34 2.02 16 16 N -0.54 -17.05 4.40 -900.95 -3.96 -21.02 16 17 C 0.05 1.70 5.11 86.32 0.44 2.14 16 18 C -0.11 -2.88 6.09 30.64 0.19 -2.69 16 19 C -0.10 -2.10 4.75 30.68 0.15 -1.95 16 20 C -0.08 -1.93 2.00 -10.74 -0.02 -1.95 16 21 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 22 C 0.26 4.95 0.73 30.60 0.02 4.97 16 23 C -0.17 -2.59 8.85 71.98 0.64 -1.95 16 24 O -0.39 -6.91 9.46 -126.20 -1.19 -8.10 16 25 C 0.01 0.17 8.07 72.64 0.59 0.75 16 26 C 0.01 0.12 7.92 72.64 0.58 0.70 16 27 O -0.39 -7.63 10.35 -126.20 -1.31 -8.93 16 28 C 0.08 1.90 4.45 86.32 0.38 2.29 16 29 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 33 H 0.10 2.36 6.44 -2.39 -0.02 2.35 16 34 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 35 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.12 3.10 7.25 -2.39 -0.02 3.09 16 38 H 0.08 2.07 7.17 -2.39 -0.02 2.05 16 39 H 0.06 2.33 5.78 -2.39 -0.01 2.32 16 40 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 1.46 7.64 -2.39 -0.02 1.44 16 44 H 0.08 1.45 6.59 -2.39 -0.02 1.43 16 45 H 0.08 1.17 6.51 -2.39 -0.02 1.16 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 52 H 0.08 1.86 7.58 -2.39 -0.02 1.84 16 53 H 0.04 0.96 7.65 -2.39 -0.02 0.95 16 Total: -1.00 -78.95 407.41 0.99 -77.96 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.87 Total: 17.84 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 6.34 Total: 11.13 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -5.71 Total: -106.91 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -2.54 Total: -48.21 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -78.95 0.99 -77.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183911996.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.976 kcal (2) G-P(sol) polarization free energy of solvation -78.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds