Wall clock time and date at job start Sat Apr 11 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47372 * 2 1 4 4 C 1.50703 * 109.46642 * 119.99663 * 2 1 3 5 5 O 1.21286 * 119.99972 * 99.97331 * 4 2 1 6 6 N 1.34777 * 120.00400 * 279.98008 * 4 2 1 7 7 C 1.46505 * 119.99502 * 359.97438 * 6 4 2 8 8 C 1.46495 * 120.00131 * 180.02562 * 6 4 2 9 9 C 1.50697 * 109.47084 * 89.99793 * 8 6 4 10 10 H 1.08003 * 120.00383 * 359.97438 * 9 8 6 11 11 C 1.37880 * 119.99961 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00142 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99992 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46841 * 90.00317 * 13 11 9 15 15 H 1.48501 * 109.47060 * 210.00273 * 13 11 9 16 16 H 1.48497 * 109.47320 * 329.99938 * 13 11 9 17 17 N 1.46930 * 109.47303 * 239.99517 * 2 1 3 18 18 C 1.47555 * 110.98832 * 300.92027 * 17 2 1 19 19 C 1.50484 * 108.83498 * 139.75390 * 18 17 2 20 20 O 1.43401 * 113.42334 * 74.00986 * 19 18 17 21 21 C 1.43683 * 118.29629 * 355.65525 * 20 19 18 22 22 C 1.50964 * 113.26545 * 289.09485 * 21 20 19 23 23 C 1.53097 * 110.18207 * 207.41953 * 22 21 20 24 24 C 1.52921 * 109.90633 * 176.51911 * 23 22 21 25 25 O 1.42835 * 109.68563 * 303.56163 * 24 23 22 26 26 C 1.42861 * 114.12299 * 60.84887 * 25 24 23 27 27 C 1.52968 * 109.45705 * 298.83018 * 26 25 24 28 28 C 1.40457 * 110.95246 * 172.33858 * 17 2 1 29 29 H 1.08990 * 109.47605 * 186.94857 * 1 2 3 30 30 H 1.09004 * 109.46436 * 66.94696 * 1 2 3 31 31 H 1.08997 * 109.47042 * 306.95411 * 1 2 3 32 32 H 1.09000 * 109.46944 * 90.00681 * 7 6 4 33 33 H 1.08997 * 109.46860 * 210.00142 * 7 6 4 34 34 H 1.08997 * 109.47143 * 329.99918 * 7 6 4 35 35 H 1.09001 * 109.47091 * 209.99296 * 8 6 4 36 36 H 1.09000 * 109.46954 * 329.99684 * 8 6 4 37 37 H 0.96995 * 120.00404 * 179.97438 * 12 11 9 38 38 H 1.08771 * 110.15584 * 260.85005 * 18 17 2 39 39 H 1.09364 * 109.16697 * 20.52716 * 18 17 2 40 40 H 1.09322 * 108.74541 * 312.69330 * 19 18 17 41 41 H 1.09329 * 108.71398 * 195.33011 * 19 18 17 42 42 H 1.09409 * 108.60558 * 168.97971 * 21 20 19 43 43 H 1.08834 * 109.73300 * 51.09792 * 21 20 19 44 44 H 1.09118 * 109.40766 * 296.76517 * 23 22 21 45 45 H 1.09133 * 109.40053 * 56.30896 * 23 22 21 46 46 H 1.09214 * 109.34104 * 183.84307 * 24 23 22 47 47 H 1.08922 * 109.84769 * 64.17086 * 24 23 22 48 48 H 1.09142 * 109.33767 * 179.02910 * 26 25 24 49 49 H 1.08916 * 109.63596 * 59.31394 * 26 25 24 50 50 H 1.09147 * 109.43091 * 297.01684 * 27 26 25 51 51 H 1.09076 * 109.36968 * 177.51158 * 27 26 25 52 52 H 1.08903 * 108.98752 * 316.50404 * 28 17 2 53 53 H 1.09120 * 108.93539 * 75.11820 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.4059 -1.8618 1.1560 6 7 2.0662 -0.0662 2.4140 7 6 1.6153 1.3248 2.5039 8 6 2.5549 -0.7566 3.6100 9 6 4.0416 -0.5465 3.7391 10 1 4.5697 0.0421 3.0035 11 6 4.7276 -1.1057 4.7963 12 7 4.0847 -1.8229 5.6918 13 14 6.5706 -0.8458 4.9559 14 1 6.8304 0.3772 5.7570 15 1 7.1792 -2.0193 5.6324 16 1 7.1672 -0.6889 3.6051 17 7 2.0199 -0.6927 -1.1996 18 6 1.5286 -2.0834 -1.2444 19 6 1.1496 -2.4193 -2.6615 20 8 2.2795 -2.6219 -3.5210 21 6 3.5929 -2.3953 -2.9843 22 6 3.8931 -0.9363 -2.7387 23 6 5.3998 -0.6832 -2.8371 24 6 5.6888 0.8095 -2.6734 25 8 4.9566 1.5513 -3.6500 26 6 3.5389 1.4040 -3.5529 27 6 3.1636 -0.0640 -3.7627 28 6 3.4129 -0.5614 -1.3218 29 1 -0.3634 -1.0200 0.1243 30 1 -0.3632 0.4024 -0.9457 31 1 -0.3633 0.6178 0.8212 32 1 0.5490 1.3472 2.7292 33 1 2.1646 1.8343 3.2955 34 1 1.7967 1.8277 1.5540 35 1 2.0536 -0.3561 4.4911 36 1 2.3446 -1.8228 3.5255 37 1 4.5674 -2.2166 6.4353 38 1 2.2979 -2.7643 -0.8872 39 1 0.6472 -2.1737 -0.6034 40 1 0.5397 -1.6063 -3.0642 41 1 0.5411 -3.3275 -2.6559 42 1 4.3313 -2.7796 -3.6943 43 1 3.7075 -2.9420 -2.0502 44 1 5.9132 -1.2416 -2.0527 45 1 5.7609 -1.0188 -3.8107 46 1 6.7571 0.9885 -2.8131 47 1 5.4009 1.1345 -1.6744 48 1 3.0588 2.0139 -4.3202 49 1 3.2031 1.7337 -2.5706 50 1 3.4489 -0.3712 -4.7705 51 1 2.0857 -0.1823 -3.6445 52 1 3.6923 0.4682 -1.1030 53 1 3.8955 -1.2189 -0.5970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184119245.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:46 Heat of formation + Delta-G solvation = -127.943274 kcal Electronic energy + Delta-G solvation = -33507.680827 eV Core-core repulsion = 29379.170532 eV Total energy + Delta-G solvation = -4128.510295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 4.70 seconds Orbital eigenvalues (eV) -42.26555 -40.71638 -39.08164 -37.38130 -36.48955 -35.55983 -34.80784 -32.36349 -32.01014 -30.68485 -29.72728 -28.67023 -27.41855 -26.35439 -25.74558 -24.56076 -24.03101 -23.23702 -21.87380 -19.90030 -19.71759 -18.75810 -18.34625 -18.06129 -17.32014 -17.11549 -16.98150 -16.80647 -16.39316 -16.36757 -16.11039 -15.73186 -15.50158 -15.25245 -14.78867 -14.65549 -14.38969 -14.24620 -14.04114 -13.95496 -13.54695 -13.41556 -13.25704 -13.16328 -12.99859 -12.94987 -12.77488 -12.71989 -12.60331 -12.48450 -12.26923 -12.16585 -12.11612 -11.90808 -11.73845 -11.62276 -11.36936 -11.11243 -10.90921 -10.69991 -10.57761 -10.16964 -9.45185 -9.24546 -8.28130 -6.43199 1.30752 1.33252 1.43058 1.77159 2.26090 2.40595 2.59631 2.88805 3.01185 3.01361 3.43090 3.63330 3.69738 3.78126 3.94701 4.03236 4.11144 4.13491 4.14837 4.22643 4.30896 4.39581 4.41848 4.44907 4.57479 4.60590 4.64993 4.66102 4.71054 4.77239 4.79048 4.84087 4.87482 4.89313 4.92051 4.96826 4.97410 5.00328 5.11355 5.17757 5.22615 5.29510 5.32859 5.41648 5.49750 5.77001 5.85227 6.00214 6.13208 6.30313 6.37714 6.63975 6.75226 7.22819 7.43274 8.78641 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011234 B = 0.004166 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.893076 B = 6720.233203 C = 7625.440136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.073 3.927 3 H 0.120 0.880 4 C 0.469 3.531 5 O -0.592 6.592 6 N -0.607 5.607 7 C 0.076 3.924 8 C 0.261 3.739 9 C -0.540 4.540 10 H 0.049 0.951 11 C 0.009 3.991 12 N -0.927 5.927 13 Si 0.964 3.036 14 H -0.262 1.262 15 H -0.281 1.281 16 H -0.274 1.274 17 N -0.504 5.504 18 C 0.036 3.964 19 C 0.073 3.927 20 O -0.395 6.395 21 C 0.079 3.921 22 C -0.076 4.076 23 C -0.140 4.140 24 C 0.063 3.937 25 O -0.396 6.396 26 C 0.060 3.940 27 C -0.113 4.113 28 C 0.073 3.927 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.021 0.979 36 H -0.006 1.006 37 H 0.267 0.733 38 H 0.034 0.966 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.027 0.973 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.042 0.958 48 H 0.107 0.893 49 H 0.050 0.950 50 H 0.064 0.936 51 H 0.088 0.912 52 H 0.073 0.927 53 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 8.084 -19.099 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.039 4.039 3 H 0.138 0.862 4 C 0.256 3.744 5 O -0.473 6.473 6 N -0.338 5.338 7 C -0.066 4.066 8 C 0.140 3.860 9 C -0.578 4.578 10 H 0.067 0.933 11 C -0.190 4.190 12 N -0.567 5.567 13 Si 0.788 3.212 14 H -0.186 1.186 15 H -0.206 1.206 16 H -0.199 1.199 17 N -0.225 5.225 18 C -0.090 4.090 19 C -0.003 4.003 20 O -0.315 6.315 21 C 0.003 3.997 22 C -0.077 4.077 23 C -0.178 4.178 24 C -0.014 4.014 25 O -0.316 6.316 26 C -0.016 4.016 27 C -0.150 4.150 28 C -0.056 4.056 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.124 0.876 47 H 0.061 0.939 48 H 0.125 0.875 49 H 0.069 0.931 50 H 0.083 0.917 51 H 0.107 0.893 52 H 0.091 0.909 53 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -5.827 7.678 -19.656 21.892 hybrid contribution 1.447 -1.053 2.349 2.953 sum -4.380 6.624 -17.307 19.042 Atomic orbital electron populations 1.21834 0.89528 1.02588 1.05046 1.22129 0.99209 0.98493 0.84070 0.86197 1.22551 0.78302 0.87252 0.86266 1.90641 1.50814 1.20072 1.85757 1.48295 1.61901 1.14507 1.09108 1.22001 1.00287 0.80578 1.03772 1.18691 0.93428 0.91471 0.82450 1.21633 0.94253 1.32673 1.09264 0.93257 1.25827 1.03496 0.94435 0.95218 1.70042 1.38082 1.34593 1.13999 0.85475 0.79151 0.78318 0.78260 1.18640 1.20635 1.19879 1.59686 1.12417 1.15623 1.34794 1.22297 1.00941 0.88497 0.97308 1.22407 0.87629 1.01538 0.88722 1.87795 1.13630 1.89720 1.40316 1.22161 0.84416 0.94266 0.98899 1.20934 0.95810 0.96483 0.94489 1.22116 0.94325 0.97924 1.03478 1.22525 0.97388 0.89949 0.91541 1.87874 1.18983 1.69283 1.55418 1.22685 0.80574 0.96277 1.02094 1.21809 1.01692 0.94096 0.97433 1.21217 0.88083 1.00528 0.95812 0.93238 0.87903 0.90031 0.90664 0.91744 0.88959 0.96135 0.98775 0.92394 0.94762 0.89753 0.89599 0.90584 0.88287 0.95436 0.91540 0.89402 0.87601 0.93943 0.87500 0.93132 0.91681 0.89318 0.90870 0.98498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.80 71.98 0.63 -1.94 16 2 C 0.07 1.91 1.95 44.17 0.09 1.99 16 3 H 0.12 2.68 5.98 -2.39 -0.01 2.66 16 4 C 0.47 18.40 6.14 87.66 0.54 18.94 16 5 O -0.59 -29.11 12.50 -3.05 -0.04 -29.15 16 6 N -0.61 -24.84 2.86 -851.13 -2.43 -27.27 16 7 C 0.08 2.13 9.57 127.77 1.22 3.35 16 8 C 0.26 13.99 5.16 85.63 0.44 14.44 16 9 C -0.54 -30.97 9.39 25.60 0.24 -30.73 16 10 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 11 C 0.01 0.54 5.46 84.66 0.46 1.00 16 12 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 13 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 14 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 17 N -0.50 -13.18 3.16 -891.69 -2.82 -15.99 16 18 C 0.04 1.04 3.36 85.36 0.29 1.33 16 19 C 0.07 1.69 6.25 71.17 0.45 2.13 16 20 O -0.40 -10.16 9.69 -148.98 -1.44 -11.61 16 21 C 0.08 2.04 5.38 71.32 0.38 2.42 16 22 C -0.08 -1.82 0.53 -52.39 -0.03 -1.84 16 23 C -0.14 -3.09 4.74 30.60 0.15 -2.95 16 24 C 0.06 1.36 6.52 71.96 0.47 1.83 16 25 O -0.40 -9.07 10.77 -148.98 -1.60 -10.68 16 26 C 0.06 1.16 6.54 71.97 0.47 1.63 16 27 C -0.11 -2.31 4.17 30.59 0.13 -2.19 16 28 C 0.07 2.10 2.78 87.89 0.24 2.35 16 29 H 0.05 1.10 6.23 -2.39 -0.01 1.09 16 30 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.08 1.37 7.03 -2.39 -0.02 1.36 16 32 H 0.07 1.70 7.72 -2.39 -0.02 1.69 16 33 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 34 H 0.09 1.94 5.94 -2.39 -0.01 1.93 16 35 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 36 H -0.01 -0.37 7.42 -2.39 -0.02 -0.38 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.03 1.26 5.19 -2.51 -0.01 1.25 16 39 H 0.08 2.43 5.31 -2.19 -0.01 2.42 16 40 H 0.09 1.68 7.65 -2.22 -0.02 1.66 16 41 H 0.08 1.59 8.17 -2.21 -0.02 1.57 16 42 H 0.10 2.22 7.74 -2.17 -0.02 2.21 16 43 H 0.03 0.85 6.11 -2.47 -0.02 0.83 16 44 H 0.07 1.58 8.15 -2.32 -0.02 1.56 16 45 H 0.09 1.71 8.02 -2.32 -0.02 1.69 16 46 H 0.11 1.96 8.16 -2.27 -0.02 1.94 16 47 H 0.04 1.00 6.68 -2.43 -0.02 0.98 16 48 H 0.11 1.67 8.15 -2.31 -0.02 1.65 16 49 H 0.05 0.99 6.80 -2.43 -0.02 0.98 16 50 H 0.06 1.35 8.15 -2.31 -0.02 1.33 16 51 H 0.09 1.84 5.89 -2.35 -0.01 1.83 16 52 H 0.07 2.03 4.73 -2.44 -0.01 2.02 16 53 H 0.00 -0.12 6.57 -2.32 -0.02 -0.14 16 Total: -1.00 -73.87 382.06 1.06 -72.81 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.91 Total: 19.08 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 6.17 Total: 11.76 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -4.96 Total: -99.10 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -3.08 Total: -51.43 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -73.87 1.06 -72.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184119245.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.137 kcal (2) G-P(sol) polarization free energy of solvation -73.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.70 seconds