Wall clock time and date at job start Sat Apr 11 2020 06:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47235 * 59.99855 * 9 7 5 11 11 H 1.48500 * 109.47168 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47142 * 299.99797 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99793 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47009 * 300.00244 * 17 16 15 19 19 C 1.52994 * 109.47073 * 60.00150 * 17 16 15 20 20 C 1.53002 * 109.47122 * 59.99769 * 19 17 16 21 21 C 1.53007 * 109.47098 * 60.00071 * 20 19 17 22 22 C 1.52998 * 109.46897 * 300.00277 * 21 20 19 23 23 C 1.52995 * 109.46978 * 180.02562 * 17 16 15 24 24 H 1.09001 * 109.46983 * 180.02562 * 23 17 16 25 25 C 1.50700 * 109.47521 * 59.99800 * 23 17 16 26 26 O 1.20822 * 119.99798 * 0.02562 * 25 23 17 27 27 O 1.34223 * 120.00044 * 179.97438 * 25 23 17 28 28 C 1.45204 * 117.00066 * 180.02562 * 27 25 23 29 29 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 31 31 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 32 32 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 34 34 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 35 35 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 36 36 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 38 38 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 39 39 H 1.00898 * 110.99877 * 56.04636 * 16 15 13 40 40 H 1.08994 * 109.47232 * 59.99974 * 18 17 16 41 41 H 1.09001 * 109.46911 * 179.97438 * 18 17 16 42 42 H 1.09002 * 109.47026 * 299.99603 * 18 17 16 43 43 H 1.09001 * 109.47167 * 179.97438 * 19 17 16 44 44 H 1.09006 * 109.47425 * 300.00135 * 19 17 16 45 45 H 1.09002 * 109.47014 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.47237 * 300.00125 * 20 19 17 47 47 H 1.09001 * 109.47033 * 59.99928 * 21 20 19 48 48 H 1.08995 * 109.47101 * 179.97438 * 21 20 19 49 49 H 1.08997 * 109.46713 * 180.02562 * 22 21 20 50 50 H 1.09001 * 109.46994 * 299.99674 * 22 21 20 51 51 H 1.08998 * 109.47068 * 300.00597 * 28 27 25 52 52 H 1.08999 * 109.47021 * 60.00304 * 28 27 25 53 53 H 1.08996 * 109.47633 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5947 11 1 6.1604 2.7947 -4.7040 12 1 6.8411 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 2.0772 1.5456 4.8802 18 6 0.6069 1.1355 4.9848 19 6 2.9622 0.3019 4.9846 20 6 4.4325 0.7120 4.8800 21 6 4.7746 1.6782 6.0160 22 6 3.8896 2.9218 5.9117 23 6 2.4187 2.5119 6.0162 24 1 2.2458 2.0219 6.9743 25 6 1.5467 3.7366 5.9131 26 8 0.7350 3.8271 5.0228 27 8 1.6710 4.7265 6.8111 28 6 0.7980 5.8756 6.6506 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6747 3.5148 -4.4447 37 1 0.9443 1.0114 2.5302 38 1 2.6227 0.4186 2.5299 39 1 1.7858 3.0648 3.5221 40 1 0.3633 0.4472 4.1755 41 1 0.4337 0.6452 5.9427 42 1 -0.0236 2.0216 4.9104 43 1 2.7892 -0.1877 5.9430 44 1 2.7186 -0.3864 4.1752 45 1 5.0630 -0.1740 4.9548 46 1 4.6058 1.2019 3.9218 47 1 4.6013 1.1883 6.9742 48 1 5.8222 1.9699 5.9417 49 1 4.1336 3.6102 6.7207 50 1 4.0629 3.4117 4.9535 51 1 0.9789 6.3365 5.6796 52 1 -0.2415 5.5536 6.7118 53 1 1.0015 6.5996 7.4396 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343629665.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:57 Heat of formation + Delta-G solvation = -147.089916 kcal Electronic energy + Delta-G solvation = -32336.512969 eV Core-core repulsion = 28207.172413 eV Total energy + Delta-G solvation = -4129.340556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.22030 -40.76187 -39.73973 -37.49821 -36.94622 -35.58035 -34.85841 -32.61857 -31.85335 -31.47483 -29.42719 -28.77952 -27.55798 -26.97031 -24.70850 -24.57321 -23.94997 -22.21635 -21.73948 -19.97740 -19.89401 -18.64167 -18.60734 -18.13292 -17.62203 -17.36114 -17.22632 -16.61692 -16.18289 -15.74452 -15.68112 -15.53964 -15.00707 -14.79696 -14.69323 -14.53161 -14.43767 -14.14421 -14.00908 -13.85603 -13.54350 -13.27696 -13.26909 -13.08401 -12.99514 -12.98944 -12.72745 -12.65843 -12.53017 -12.49886 -12.34306 -12.15853 -12.08489 -11.88113 -11.76327 -11.74209 -11.71577 -11.36528 -10.97963 -10.77683 -10.64541 -10.50854 -9.44039 -9.20600 -8.22117 -6.37295 1.14360 1.35220 1.40432 1.47577 1.76028 1.88121 2.26983 2.42538 3.06828 3.22881 3.44987 3.72974 3.80269 3.89215 4.06522 4.10800 4.25704 4.27050 4.28436 4.29574 4.33947 4.41576 4.43534 4.46716 4.50591 4.54576 4.62651 4.68703 4.78357 4.84900 4.90545 4.93129 4.96637 5.02521 5.03619 5.07028 5.19831 5.20827 5.31550 5.35534 5.36294 5.38802 5.44887 5.50809 5.58152 5.71331 5.86639 6.07097 6.11762 6.40072 6.70877 6.74266 6.84470 7.28958 7.54344 8.84839 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.003185 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.192164 B = 8789.169943 C = 8914.133591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.258 1.258 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.493 3.507 14 O -0.589 6.589 15 C 0.059 3.941 16 N -0.674 5.674 17 C 0.127 3.873 18 C -0.194 4.194 19 C -0.101 4.101 20 C -0.119 4.119 21 C -0.105 4.105 22 C -0.103 4.103 23 C -0.061 4.061 24 H 0.144 0.856 25 C 0.463 3.537 26 O -0.531 6.531 27 O -0.360 6.360 28 C 0.028 3.972 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.020 0.980 35 H -0.010 1.010 36 H 0.267 0.733 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.344 0.656 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.042 0.958 47 H 0.088 0.912 48 H 0.064 0.936 49 H 0.080 0.920 50 H 0.047 0.953 51 H 0.049 0.951 52 H 0.064 0.936 53 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 -8.353 26.345 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.182 1.182 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.282 3.718 14 O -0.470 6.470 15 C -0.072 4.072 16 N -0.310 5.310 17 C 0.036 3.964 18 C -0.252 4.252 19 C -0.139 4.139 20 C -0.157 4.157 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.080 4.080 24 H 0.162 0.838 25 C 0.308 3.692 26 O -0.421 6.421 27 O -0.276 6.276 28 C -0.065 4.065 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.038 0.962 35 H 0.008 0.992 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.167 0.833 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.106 0.894 48 H 0.083 0.917 49 H 0.099 0.901 50 H 0.066 0.934 51 H 0.068 0.932 52 H 0.083 0.917 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.773 -7.729 25.898 27.289 hybrid contribution -0.543 0.910 -1.304 1.680 sum -4.315 -6.819 24.594 25.884 Atomic orbital electron populations 1.22153 0.94842 1.03507 1.01344 1.21727 0.95088 0.81413 1.03924 1.48271 1.64189 1.15122 1.06124 1.18642 0.95328 0.91216 0.80490 1.21684 0.97816 1.32039 1.06474 0.92838 1.25893 1.02539 0.94431 0.96406 1.70060 1.37884 1.34293 1.14772 0.85451 0.78828 0.79144 0.77286 1.18200 1.20287 1.20423 1.21358 0.77189 0.86651 0.86604 1.90625 1.47518 1.20851 1.87965 1.21810 1.01517 0.96628 0.87278 1.60485 1.62915 1.07156 1.00466 1.20900 0.94585 0.93630 0.87294 1.22769 0.96587 1.02410 1.03482 1.21661 0.94039 0.94537 1.03649 1.21472 0.96052 0.99229 0.98930 1.21438 0.98776 0.94648 0.99388 1.21421 0.91088 0.99364 1.02206 1.21310 0.94974 0.89594 1.02148 0.83823 1.24393 0.81520 0.85020 0.78265 1.90562 1.37232 1.79628 1.34651 1.86489 1.59975 1.29013 1.52074 1.23490 0.93521 0.85615 1.03855 0.88337 0.92723 0.94427 0.90824 0.88211 0.96201 0.99169 0.92446 0.90768 0.86515 0.83294 0.91767 0.89969 0.92520 0.88433 0.91132 0.90954 0.93893 0.89389 0.91749 0.90128 0.93425 0.93197 0.91738 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 10.24 71.98 0.74 -3.50 16 2 C 0.10 3.21 5.93 86.38 0.51 3.73 16 3 N -0.61 -27.16 2.46 -826.16 -2.03 -29.19 16 4 C 0.26 15.08 5.16 85.64 0.44 15.53 16 5 C -0.54 -32.53 9.39 25.60 0.24 -32.29 16 6 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 9 Si 0.97 46.32 29.54 68.60 2.03 48.34 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 C 0.49 22.21 7.71 87.66 0.68 22.89 16 14 O -0.59 -33.28 15.78 -3.03 -0.05 -33.33 16 15 C 0.06 1.85 3.93 85.56 0.34 2.19 16 16 N -0.67 -20.76 4.17 -474.14 -1.98 -22.73 16 17 C 0.13 2.64 0.28 3.52 0.00 2.64 16 18 C -0.19 -3.71 7.91 71.98 0.57 -3.14 16 19 C -0.10 -1.62 4.36 30.59 0.13 -1.49 16 20 C -0.12 -2.23 5.77 30.60 0.18 -2.06 16 21 C -0.11 -1.66 5.92 30.60 0.18 -1.48 16 22 C -0.10 -2.03 4.98 30.61 0.15 -1.88 16 23 C -0.06 -1.15 1.99 -11.53 -0.02 -1.17 16 24 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 25 C 0.46 11.16 6.71 71.24 0.48 11.64 16 26 O -0.53 -16.18 11.32 21.98 0.25 -15.94 16 27 O -0.36 -7.57 10.47 -51.34 -0.54 -8.11 16 28 C 0.03 0.48 10.56 113.37 1.20 1.68 16 29 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.05 1.39 7.22 -2.39 -0.02 1.37 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 2.47 8.07 -2.38 -0.02 2.45 16 33 H 0.10 2.44 6.44 -2.39 -0.02 2.43 16 34 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 35 H -0.01 -0.65 7.42 -2.39 -0.02 -0.67 16 36 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 37 H 0.07 2.01 5.35 -2.39 -0.01 1.99 16 38 H 0.12 3.09 5.56 -2.39 -0.01 3.08 16 39 H 0.34 12.81 5.70 -89.70 -0.51 12.30 16 40 H 0.06 1.18 6.40 -2.39 -0.02 1.16 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.40 5.51 -2.39 -0.01 1.38 16 43 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.12 6.40 -2.38 -0.02 1.11 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.04 1.16 7.60 -2.39 -0.02 1.14 16 47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 50 H 0.05 1.33 7.60 -2.39 -0.02 1.31 16 51 H 0.05 1.00 8.13 -2.39 -0.02 0.99 16 52 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 53 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -82.35 405.78 4.63 -77.72 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.39 Total: 27.14 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 6.27 Total: 14.08 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -3.72 Total: -109.92 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -0.34 Total: -57.37 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -82.35 4.63 -77.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343629665.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.371 kcal (2) G-P(sol) polarization free energy of solvation -82.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds