Wall clock time and date at job start Sat Apr 11 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47179 * 2 1 4 4 C 1.34237 * 117.00190 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99351 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00224 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.49675 * 59.99690 * 6 4 3 8 8 C 1.53047 * 109.49364 * 299.93488 * 6 4 3 9 9 C 1.53043 * 109.53487 * 178.71671 * 8 6 4 10 10 C 1.53190 * 109.33816 * 61.31604 * 9 8 6 11 11 N 1.46923 * 108.77694 * 305.37692 * 10 9 8 12 12 C 1.34777 * 120.63325 * 233.63440 * 11 10 9 13 13 O 1.21280 * 120.00432 * 175.24253 * 12 11 10 14 14 C 1.50702 * 119.99776 * 355.24038 * 12 11 10 15 15 H 1.09004 * 109.47057 * 37.75760 * 14 12 11 16 16 C 1.52991 * 109.47424 * 277.75425 * 14 12 11 17 17 N 1.46897 * 109.46899 * 157.75362 * 14 12 11 18 18 C 1.46902 * 111.00325 * 303.64561 * 17 14 12 19 19 C 1.53008 * 109.47014 * 305.44009 * 18 17 14 20 20 C 1.46905 * 111.00250 * 179.69330 * 17 14 12 21 21 C 1.50700 * 109.47346 * 189.74457 * 20 17 14 22 22 H 1.07994 * 119.99727 * 5.09015 * 21 20 17 23 23 C 1.37880 * 119.99863 * 185.08788 * 21 20 17 24 24 N 1.31517 * 119.99676 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99855 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47233 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47005 * 120.00019 * 25 23 21 28 28 H 1.48500 * 109.47269 * 240.00149 * 25 23 21 29 29 C 1.46927 * 118.73931 * 53.61142 * 11 10 9 30 30 H 1.08993 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47312 * 59.99924 * 1 2 3 32 32 H 1.09004 * 109.47099 * 300.00337 * 1 2 3 33 33 H 1.09000 * 109.47312 * 120.00076 * 2 1 3 34 34 H 1.09002 * 109.47250 * 240.00184 * 2 1 3 35 35 H 1.08999 * 109.45607 * 298.69958 * 8 6 4 36 36 H 1.08998 * 109.46307 * 58.66213 * 8 6 4 37 37 H 1.08995 * 109.46897 * 301.36191 * 9 8 6 38 38 H 1.08997 * 109.51913 * 181.29432 * 9 8 6 39 39 H 1.09002 * 109.58706 * 185.59253 * 10 9 8 40 40 H 1.09002 * 109.59258 * 65.16654 * 10 9 8 41 41 H 1.09005 * 109.47487 * 296.43351 * 16 14 12 42 42 H 1.09003 * 109.47147 * 56.43265 * 16 14 12 43 43 H 1.09005 * 109.47130 * 176.43253 * 16 14 12 44 44 H 1.08995 * 109.46967 * 65.43481 * 18 17 14 45 45 H 1.08997 * 109.47661 * 185.44466 * 18 17 14 46 46 H 1.08995 * 109.46965 * 185.78557 * 19 18 17 47 47 H 1.08995 * 109.46858 * 305.78880 * 19 18 17 48 48 H 1.09000 * 109.46866 * 65.78916 * 19 18 17 49 49 H 1.08997 * 109.46921 * 309.74591 * 20 17 14 50 50 H 1.09001 * 109.47157 * 69.73732 * 20 17 14 51 51 H 0.97001 * 119.99206 * 179.97438 * 24 23 21 52 52 H 1.08994 * 109.58883 * 186.60276 * 29 11 10 53 53 H 1.09001 * 109.70135 * 66.24992 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5855 3.4694 0.8903 8 6 3.4501 3.6853 -1.2496 9 6 4.0086 5.1101 -1.2340 10 6 5.5394 5.0552 -1.2503 11 7 5.9945 4.2165 -0.1331 12 6 6.8935 4.6847 0.7552 13 8 7.1966 4.0164 1.7208 14 6 7.5222 6.0386 0.5486 15 1 6.7787 6.7269 0.1463 16 6 8.6877 5.9151 -0.4347 17 7 8.0176 6.5496 1.8336 18 6 6.9402 6.6000 2.8309 19 6 5.7689 7.4129 2.2756 20 6 8.6450 7.8678 1.6694 21 6 9.3481 8.2520 2.9458 22 1 9.4011 7.5506 3.7652 23 6 9.9237 9.4990 3.0673 24 7 9.8587 10.3533 2.0694 25 14 10.7946 9.9756 4.6496 26 1 10.7278 8.8457 5.6110 27 1 12.2155 10.2922 4.3565 28 1 10.1332 11.1674 5.2391 29 6 5.4506 2.8579 -0.0024 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.8063 3.1659 -2.1392 36 1 2.3608 3.7218 -1.2623 37 1 3.6725 5.6221 -0.3324 38 1 3.6545 5.6497 -2.1123 39 1 5.9424 6.0619 -1.1393 40 1 5.8796 4.6251 -2.1923 41 1 9.4599 5.2770 -0.0047 42 1 8.3317 5.4767 -1.3670 43 1 9.1022 6.9036 -0.6330 44 1 6.6055 5.5874 3.0556 45 1 7.3098 7.0711 3.7417 46 1 5.0131 7.5374 3.0510 47 1 6.1255 8.3917 1.9552 48 1 5.3336 6.8884 1.4249 49 1 9.3677 7.8272 0.8545 50 1 7.8792 8.6085 1.4392 51 1 10.2633 11.2307 2.1551 52 1 5.7949 2.4148 0.9320 53 1 5.7835 2.2465 -0.8411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357928314.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:18 Heat of formation + Delta-G solvation = -137.635284 kcal Electronic energy + Delta-G solvation = -31552.102476 eV Core-core repulsion = 27423.171904 eV Total energy + Delta-G solvation = -4128.930572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.04986 -41.31759 -39.10422 -37.98660 -37.62931 -34.83466 -34.42220 -32.90374 -32.67469 -32.11031 -30.57042 -28.08367 -27.00862 -26.12100 -25.06283 -24.40428 -23.78577 -22.70155 -21.95408 -20.94759 -19.67722 -18.77753 -18.49889 -18.23722 -17.67014 -17.39935 -16.95513 -16.77099 -16.39134 -16.27439 -15.77588 -15.41657 -15.28844 -14.96777 -14.70722 -14.56188 -14.39241 -14.15953 -13.95235 -13.81641 -13.64350 -13.57903 -13.41246 -13.20970 -12.99299 -12.92927 -12.72269 -12.65532 -12.63438 -12.48306 -12.38991 -12.35889 -12.16750 -11.97857 -11.93030 -11.73865 -11.55149 -11.50579 -11.35312 -11.23199 -10.64374 -10.47707 -9.72402 -8.85739 -8.17187 -6.23957 1.04737 1.37952 1.39697 1.41626 1.54504 1.61333 2.01080 2.42651 3.15239 3.26850 3.34943 3.52423 3.67091 3.73914 3.95280 3.99446 4.00162 4.06778 4.10989 4.16347 4.20008 4.24250 4.33894 4.45180 4.49421 4.54002 4.58979 4.66479 4.70940 4.74323 4.83329 4.85455 4.89757 4.92155 4.95168 5.01171 5.05952 5.10336 5.13259 5.21968 5.25174 5.33347 5.38145 5.38959 5.47282 5.51783 5.70073 6.09851 6.28447 6.37692 6.61246 6.68061 6.91021 7.20211 7.44088 8.92919 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023254 B = 0.002367 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.804406 B =11827.682617 C =12043.900877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.355 6.355 4 C 0.476 3.524 5 O -0.537 6.537 6 C -0.089 4.089 7 H 0.114 0.886 8 C -0.102 4.102 9 C -0.128 4.128 10 C 0.088 3.912 11 N -0.608 5.608 12 C 0.527 3.473 13 O -0.562 6.562 14 C 0.065 3.935 15 H 0.075 0.925 16 C -0.134 4.134 17 N -0.533 5.533 18 C 0.056 3.944 19 C -0.173 4.173 20 C 0.206 3.794 21 C -0.520 4.520 22 H 0.050 0.950 23 C 0.008 3.992 24 N -0.927 5.927 25 Si 0.960 3.040 26 H -0.273 1.273 27 H -0.278 1.278 28 H -0.277 1.277 29 C 0.132 3.868 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.044 0.956 48 H 0.060 0.940 49 H 0.019 0.981 50 H -0.016 1.016 51 H 0.264 0.736 52 H 0.068 0.932 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.442 -14.858 -12.500 28.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.271 6.271 4 C 0.319 3.681 5 O -0.427 6.427 6 C -0.109 4.109 7 H 0.132 0.868 8 C -0.140 4.140 9 C -0.165 4.165 10 C -0.033 4.033 11 N -0.342 5.342 12 C 0.316 3.684 13 O -0.440 6.440 14 C -0.046 4.046 15 H 0.092 0.908 16 C -0.192 4.192 17 N -0.258 5.258 18 C -0.073 4.073 19 C -0.231 4.231 20 C 0.081 3.919 21 C -0.558 4.558 22 H 0.068 0.932 23 C -0.190 4.190 24 N -0.567 5.567 25 Si 0.785 3.215 26 H -0.197 1.197 27 H -0.204 1.204 28 H -0.202 1.202 29 C 0.009 3.991 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.063 0.937 48 H 0.079 0.921 49 H 0.037 0.963 50 H 0.002 0.998 51 H 0.073 0.927 52 H 0.087 0.913 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.670 -15.685 -11.870 28.533 hybrid contribution 0.339 0.698 0.879 1.172 sum -20.331 -14.987 -10.991 27.545 Atomic orbital electron populations 1.21822 0.90290 1.04366 1.03824 1.23314 0.97154 0.79145 1.02550 1.86504 1.23469 1.33731 1.83416 1.23730 0.80903 0.92256 0.71165 1.90683 1.61171 1.44162 1.46653 1.21417 0.95188 0.89924 1.04366 0.86834 1.21538 1.02635 0.95380 0.94407 1.21941 0.93434 0.96431 1.04741 1.22266 0.96144 0.95778 0.89090 1.48122 1.42352 1.15147 1.28586 1.20740 0.78324 0.88011 0.81330 1.90645 1.62516 1.60088 1.30706 1.21662 0.97691 0.92615 0.92665 0.90814 1.21760 0.96784 1.02927 0.97680 1.62027 1.29381 1.27978 1.06433 1.22023 0.90137 0.99114 0.95983 1.22253 0.98902 1.00275 1.01705 1.19499 0.92733 0.83300 0.96383 1.21435 1.34543 0.98951 1.00912 0.93215 1.25721 0.97155 0.96316 0.99816 1.70049 1.46323 1.07544 1.32827 0.85479 0.78314 0.77993 0.79701 1.19720 1.20366 1.20215 1.21206 0.90965 0.83423 1.03510 0.88323 0.90846 0.91472 0.91801 0.90971 0.90020 0.88498 0.91489 0.86769 0.88947 0.88607 0.93368 0.89035 0.91657 0.91745 0.92488 0.91237 0.93710 0.92074 0.96280 0.99849 0.92730 0.91349 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 71.98 0.74 -0.39 16 2 C 0.05 0.71 6.19 71.98 0.45 1.15 16 3 O -0.35 -6.17 10.10 -51.49 -0.52 -6.69 16 4 C 0.48 9.85 7.26 71.24 0.52 10.37 16 5 O -0.54 -14.53 15.67 21.97 0.34 -14.19 16 6 C -0.09 -1.59 2.78 -11.46 -0.03 -1.62 16 7 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 8 C -0.10 -1.14 5.11 30.62 0.16 -0.99 16 9 C -0.13 -1.38 6.08 30.67 0.19 -1.20 16 10 C 0.09 1.38 5.98 86.36 0.52 1.90 16 11 N -0.61 -14.74 2.97 -818.92 -2.43 -17.18 16 12 C 0.53 17.87 5.85 87.66 0.51 18.39 16 13 O -0.56 -24.16 14.25 -3.03 -0.04 -24.20 16 14 C 0.07 2.30 1.07 44.17 0.05 2.35 16 15 H 0.07 2.32 4.63 -2.38 -0.01 2.31 16 16 C -0.13 -4.35 8.83 71.98 0.64 -3.71 16 17 N -0.53 -24.11 4.31 -879.91 -3.80 -27.90 16 18 C 0.06 2.36 5.43 86.31 0.47 2.83 16 19 C -0.17 -6.01 9.07 71.98 0.65 -5.36 16 20 C 0.21 10.72 4.40 85.56 0.38 11.10 16 21 C -0.52 -29.94 8.26 25.60 0.21 -29.73 16 22 H 0.05 2.95 7.36 -2.91 -0.02 2.93 16 23 C 0.01 0.47 5.46 84.65 0.46 0.93 16 24 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 25 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 26 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 28 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 29 C 0.13 3.13 5.08 86.36 0.44 3.57 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 34 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.85 8.09 -2.39 -0.02 0.83 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 1.53 5.42 -2.39 -0.01 1.52 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.09 2.18 7.82 -2.39 -0.02 2.16 16 43 H 0.06 2.28 6.39 -2.38 -0.02 2.26 16 44 H 0.06 2.76 6.06 -2.39 -0.01 2.75 16 45 H 0.06 2.70 6.74 -2.39 -0.02 2.68 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.04 1.75 6.35 -2.39 -0.02 1.74 16 48 H 0.06 1.81 6.55 -2.39 -0.02 1.79 16 49 H 0.02 1.04 5.90 -2.39 -0.01 1.03 16 50 H -0.02 -0.88 6.28 -2.39 -0.01 -0.89 16 51 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 52 H 0.07 2.10 7.00 -2.39 -0.02 2.08 16 53 H 0.08 1.85 7.95 -2.39 -0.02 1.83 16 Total: -1.00 -75.26 407.10 3.09 -72.17 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.89 Total: 15.42 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 6.34 Total: 9.58 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -5.94 Total: -99.29 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -0.22 Total: -45.08 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -75.26 3.09 -72.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357928314.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.470 kcal (2) G-P(sol) polarization free energy of solvation -75.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds