Wall clock time and date at job start Sat Apr 11 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46983 * 2 1 4 4 O 1.42900 * 109.46656 * 240.00587 * 2 1 3 5 5 C 1.42902 * 114.00299 * 90.00043 * 4 2 1 6 6 C 1.52991 * 109.47422 * 179.97438 * 5 4 2 7 7 H 1.08997 * 110.27594 * 55.63391 * 6 5 4 8 8 C 1.54947 * 110.31151 * 177.83074 * 6 5 4 9 9 C 1.55308 * 100.94168 * 155.35931 * 8 6 5 10 10 C 1.54382 * 102.25334 * 325.86992 * 9 8 6 11 11 O 1.43241 * 107.59018 * 21.35344 * 10 9 8 12 12 C 1.50701 * 109.47351 * 120.00327 * 2 1 3 13 13 O 1.21277 * 119.99873 * 119.99998 * 12 2 1 14 14 N 1.34771 * 119.99719 * 300.00044 * 12 2 1 15 15 C 1.46505 * 119.99564 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47158 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.49632 * 305.06212 * 16 15 14 18 18 C 1.53032 * 109.49838 * 184.99869 * 16 15 14 19 19 C 1.53040 * 109.53973 * 178.68079 * 18 16 15 20 20 C 1.53191 * 109.31066 * 61.36667 * 19 18 16 21 21 N 1.46923 * 108.77550 * 305.36451 * 20 19 18 22 22 C 1.36941 * 120.63462 * 233.63245 * 21 20 19 23 23 H 1.07998 * 120.00642 * 152.62291 * 22 21 20 24 24 C 1.38815 * 119.99649 * 332.61953 * 22 21 20 25 25 N 1.31616 * 119.99812 * 159.34061 * 24 22 21 26 26 Si 1.86796 * 120.00167 * 339.34589 * 24 22 21 27 27 H 1.48499 * 109.47262 * 92.95874 * 26 24 22 28 28 H 1.48499 * 109.47266 * 212.95915 * 26 24 22 29 29 H 1.48503 * 109.47218 * 332.96013 * 26 24 22 30 30 C 1.46922 * 118.74011 * 53.61101 * 21 20 19 31 31 H 1.09003 * 109.47130 * 299.99198 * 1 2 3 32 32 H 1.08996 * 109.47725 * 59.99319 * 1 2 3 33 33 H 1.09001 * 109.46983 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46969 * 299.99632 * 5 4 2 35 35 H 1.08998 * 109.47318 * 59.99035 * 5 4 2 36 36 H 1.08994 * 111.12405 * 273.27526 * 8 6 5 37 37 H 1.08999 * 111.12039 * 37.43996 * 8 6 5 38 38 H 1.08999 * 110.84457 * 207.67817 * 9 8 6 39 39 H 1.08998 * 110.84731 * 84.05859 * 9 8 6 40 40 H 1.09001 * 109.83059 * 261.84368 * 10 9 8 41 41 H 1.08994 * 109.83538 * 140.87132 * 10 9 8 42 42 H 0.96997 * 120.00256 * 359.97438 * 14 12 2 43 43 H 1.09001 * 109.47286 * 299.99685 * 15 14 12 44 44 H 1.08993 * 109.47340 * 59.99945 * 15 14 12 45 45 H 1.08995 * 109.46246 * 298.70398 * 18 16 15 46 46 H 1.09007 * 109.46123 * 58.67503 * 18 16 15 47 47 H 1.08997 * 109.50042 * 181.31541 * 19 18 16 48 48 H 1.08998 * 109.49806 * 301.41821 * 19 18 16 49 49 H 1.09001 * 109.59100 * 65.15236 * 20 19 18 50 50 H 1.09004 * 109.58606 * 185.43694 * 20 19 18 51 51 H 0.97005 * 120.00308 * 180.02562 * 25 24 22 52 52 H 1.09005 * 109.59161 * 186.60649 * 30 21 20 53 53 H 1.08997 * 109.59141 * 66.17707 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1669 5 6 2.2000 0.1831 -2.2942 6 6 2.7088 -0.6403 -3.4790 7 1 2.0238 -1.4612 -3.6904 8 6 2.8739 0.2607 -4.7287 9 6 3.9417 -0.5356 -5.5272 10 6 4.8118 -1.1361 -4.4022 11 8 4.0248 -1.1470 -3.2054 12 6 2.0324 -0.7105 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1957 -0.9405 3.6506 16 6 1.6862 -0.2190 4.9000 17 1 1.9733 0.8316 4.8559 18 6 2.2965 -0.8635 6.1466 19 6 1.8133 -0.1217 7.3949 20 6 0.2884 -0.2319 7.4911 21 7 -0.3009 0.2526 6.2355 22 6 -1.2609 1.2290 6.2462 23 1 -1.3759 1.8828 5.3943 24 6 -2.0863 1.3786 7.3523 25 7 -2.7114 2.5185 7.5575 26 14 -2.3097 -0.0378 8.5494 27 1 -1.3266 0.0888 9.6551 28 1 -3.6865 -0.0041 9.1048 29 1 -2.0936 -1.3244 7.8398 30 6 0.1597 -0.3302 4.9679 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.2536 0.6549 -2.5589 35 1 2.9318 0.9515 -2.0451 36 1 1.9402 0.3339 -5.2863 37 1 3.2441 1.2485 -4.4546 38 1 4.5298 0.1300 -6.1591 39 1 3.4758 -1.3231 -6.1195 40 1 5.7006 -0.5226 -4.2546 41 1 5.1027 -2.1537 -4.6627 42 1 1.1494 0.5388 2.5435 43 1 1.8328 -1.9683 3.6508 44 1 3.2856 -0.9400 3.6504 45 1 1.9894 -1.9077 6.2029 46 1 3.3836 -0.8073 6.0891 47 1 2.2667 -0.5665 8.2807 48 1 2.0987 0.9281 7.3277 49 1 0.0064 -1.2728 7.6494 50 1 -0.0700 0.3743 8.3232 51 1 -3.2879 2.6233 8.3306 52 1 -0.2837 0.2131 4.1333 53 1 -0.1326 -1.3792 4.9203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359432223.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:34 Heat of formation + Delta-G solvation = -138.916806 kcal Electronic energy + Delta-G solvation = -30212.014751 eV Core-core repulsion = 26083.028608 eV Total energy + Delta-G solvation = -4128.986143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 4.83 seconds Orbital eigenvalues (eV) -41.14755 -40.43414 -39.63126 -38.43205 -36.31618 -34.77234 -33.39921 -33.07131 -32.67258 -31.92141 -30.90739 -27.51725 -27.01191 -26.52296 -24.83181 -23.65625 -22.87656 -22.52985 -22.28507 -21.44670 -20.68444 -18.79763 -18.34772 -18.06925 -17.88092 -17.26215 -16.98813 -16.76961 -16.41856 -16.13377 -15.79709 -15.61896 -15.46363 -15.12469 -14.96354 -14.80295 -14.46859 -14.21289 -14.11333 -13.98396 -13.78046 -13.49225 -13.32790 -13.27117 -13.17963 -13.02752 -12.67031 -12.55654 -12.45089 -12.18609 -12.14416 -12.12316 -12.05081 -11.69252 -11.68686 -11.58703 -11.33167 -11.25124 -10.99875 -10.65225 -10.49759 -10.46362 -10.09911 -8.91043 -8.15018 -5.45533 1.30027 1.41854 1.49960 1.56297 1.86792 2.42698 2.77969 2.92043 3.06835 3.32700 3.54930 3.66770 3.86175 3.87418 3.91831 3.96585 3.97244 4.01928 4.08018 4.15195 4.25380 4.25861 4.37504 4.40145 4.48822 4.54455 4.58233 4.64604 4.69558 4.77174 4.79248 4.81436 4.83746 4.85048 4.88749 4.97410 5.00174 5.00973 5.08911 5.15372 5.20477 5.23911 5.26238 5.29603 5.43127 5.58188 5.88517 6.01843 6.14606 6.18512 6.53760 6.93383 7.21020 7.64453 8.05964 9.04403 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.001972 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.222409 B =14194.935481 C =15030.517071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.072 3.928 3 H 0.114 0.886 4 O -0.383 6.383 5 C 0.055 3.945 6 C 0.073 3.927 7 H 0.070 0.930 8 C -0.140 4.140 9 C -0.148 4.148 10 C 0.035 3.965 11 O -0.408 6.408 12 C 0.509 3.491 13 O -0.574 6.574 14 N -0.714 5.714 15 C 0.137 3.863 16 C -0.102 4.102 17 H 0.077 0.923 18 C -0.100 4.100 19 C -0.126 4.126 20 C 0.115 3.885 21 N -0.619 5.619 22 C -0.242 4.242 23 H 0.061 0.939 24 C -0.035 4.035 25 N -0.955 5.955 26 Si 0.942 3.058 27 H -0.277 1.277 28 H -0.314 1.314 29 H -0.266 1.266 30 C 0.152 3.848 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.413 0.587 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.056 0.944 49 H 0.028 0.972 50 H 0.047 0.953 51 H 0.260 0.740 52 H 0.062 0.938 53 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.942 -3.217 -23.928 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 H 0.131 0.869 4 O -0.302 6.302 5 C -0.021 4.021 6 C 0.016 3.984 7 H 0.088 0.912 8 C -0.178 4.178 9 C -0.186 4.186 10 C -0.041 4.041 11 O -0.329 6.329 12 C 0.295 3.705 13 O -0.452 6.452 14 N -0.368 5.368 15 C 0.013 3.987 16 C -0.123 4.123 17 H 0.095 0.905 18 C -0.138 4.138 19 C -0.165 4.165 20 C -0.010 4.010 21 N -0.343 5.343 22 C -0.372 4.372 23 H 0.078 0.922 24 C -0.230 4.230 25 N -0.601 5.601 26 Si 0.772 3.228 27 H -0.204 1.204 28 H -0.243 1.243 29 H -0.191 1.191 30 C 0.027 3.973 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.250 0.750 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.075 0.925 49 H 0.046 0.954 50 H 0.065 0.935 51 H 0.069 0.931 52 H 0.081 0.919 53 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 13.444 -4.122 -23.738 27.591 hybrid contribution -0.900 0.080 0.916 1.287 sum 12.544 -4.042 -22.822 26.354 Atomic orbital electron populations 1.22249 0.91782 1.03400 1.04992 1.21998 0.96112 0.96741 0.84005 0.86870 1.88069 1.86841 1.35431 1.19842 1.23024 1.01048 0.92641 0.85369 1.23176 0.84944 0.96154 0.94115 0.91189 1.23258 1.01362 0.99054 0.94097 1.23126 0.97229 1.00563 0.97669 1.23346 0.94958 1.01259 0.84508 1.88551 1.24643 1.86028 1.33664 1.20972 0.79673 0.84436 0.85403 1.90695 1.39297 1.27966 1.87273 1.45951 1.53514 1.32434 1.04873 1.21288 0.98901 0.95860 0.82652 1.21732 0.96374 1.00354 0.93811 0.90482 1.21369 1.00543 0.99144 0.92696 1.21898 0.94954 1.00817 0.98838 1.21431 0.94316 0.96618 0.88628 1.44476 1.43615 1.44147 1.02058 1.18898 1.08746 1.06305 1.03233 0.92162 1.25845 0.98025 0.98658 1.00451 1.69949 1.34904 1.24779 1.30499 0.85990 0.75267 0.82007 0.79563 1.20384 1.24282 1.19056 1.21109 0.92634 0.96038 0.87539 0.89616 0.88916 0.92679 0.88756 0.92177 0.87354 0.89176 0.87862 0.89684 0.90912 0.91494 0.75025 0.92219 0.91201 0.91705 0.89913 0.90110 0.92478 0.95400 0.93526 0.93102 0.91937 0.95643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.42 71.98 0.68 -2.16 16 2 C 0.07 1.55 3.14 29.85 0.09 1.64 16 3 H 0.11 1.75 7.79 -2.39 -0.02 1.73 16 4 O -0.38 -9.96 9.51 -126.82 -1.21 -11.16 16 5 C 0.06 0.95 5.46 71.98 0.39 1.35 16 6 C 0.07 1.28 3.73 31.26 0.12 1.40 16 7 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 8 C -0.14 -1.27 6.57 32.05 0.21 -1.06 16 9 C -0.15 -1.30 7.02 31.86 0.22 -1.08 16 10 C 0.04 0.55 7.79 72.45 0.56 1.11 16 11 O -0.41 -9.94 11.03 -147.42 -1.63 -11.56 16 12 C 0.51 14.47 7.23 87.66 0.63 15.11 16 13 O -0.57 -22.06 16.50 16.02 0.26 -21.80 16 14 N -0.71 -17.44 5.22 -463.06 -2.42 -19.86 16 15 C 0.14 3.56 5.07 86.38 0.44 4.00 16 16 C -0.10 -2.87 2.37 -10.72 -0.03 -2.89 16 17 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 18 C -0.10 -2.64 5.17 30.62 0.16 -2.48 16 19 C -0.13 -3.96 6.08 30.67 0.19 -3.78 16 20 C 0.11 4.71 4.20 86.36 0.36 5.07 16 21 N -0.62 -27.68 2.77 -699.09 -1.94 -29.61 16 22 C -0.24 -13.15 10.04 84.03 0.84 -12.31 16 23 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 24 C -0.04 -2.01 5.23 84.86 0.44 -1.56 16 25 N -0.95 -58.83 13.97 21.65 0.30 -58.52 16 26 Si 0.94 46.33 24.35 68.60 1.67 48.00 16 27 H -0.28 -12.93 6.62 99.48 0.66 -12.27 16 28 H -0.31 -15.78 7.11 99.48 0.71 -15.08 16 29 H -0.27 -12.65 6.63 99.48 0.66 -11.99 16 30 C 0.15 5.37 5.60 86.37 0.48 5.85 16 31 H 0.09 1.31 7.56 -2.39 -0.02 1.29 16 32 H 0.09 1.13 7.87 -2.39 -0.02 1.11 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.00 7.87 -2.38 -0.02 0.98 16 35 H 0.06 0.97 8.08 -2.39 -0.02 0.95 16 36 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.09 0.68 8.06 -2.39 -0.02 0.66 16 38 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.41 8.50 7.13 -92.71 -0.66 7.84 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 47 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.03 1.13 7.08 -2.39 -0.02 1.11 16 50 H 0.05 2.14 4.50 -2.38 -0.01 2.13 16 51 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 52 H 0.06 2.14 7.14 -2.38 -0.02 2.12 16 53 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -78.76 409.40 0.98 -77.78 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.12 Total: 18.54 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.80 Total: 8.20 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -4.05 Total: -108.00 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -2.57 Total: -44.52 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.67 Total: 48.00 kcal Total: -78.76 0.98 -77.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359432223.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.135 kcal (2) G-P(sol) polarization free energy of solvation -78.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.83 seconds