Wall clock time and date at job start Sat Apr 11 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47013 * 2 1 4 4 C 1.46503 * 120.00209 * 269.99664 * 3 2 1 5 5 C 1.50703 * 109.47431 * 270.00505 * 4 3 2 6 6 H 1.08003 * 119.99431 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00313 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99675 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00403 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47140 * 59.99557 * 9 7 5 11 11 H 1.48496 * 109.47672 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47024 * 300.00069 * 9 7 5 13 13 C 1.34771 * 120.00032 * 89.99981 * 3 2 1 14 14 O 1.21287 * 120.00178 * 179.72325 * 13 3 2 15 15 C 1.50701 * 120.00300 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.47578 * 173.52655 * 15 13 3 17 17 C 1.46849 * 110.99972 * 169.41120 * 16 15 13 18 18 C 1.53039 * 109.52012 * 185.83904 * 17 16 15 19 19 C 1.53116 * 109.27723 * 300.82108 * 18 17 16 20 20 O 1.42909 * 109.57337 * 177.59374 * 19 18 17 21 21 C 1.42899 * 113.99881 * 90.28318 * 20 19 18 22 22 H 1.09003 * 110.45713 * 27.40048 * 21 20 19 23 23 C 1.54507 * 110.50733 * 150.00219 * 21 20 19 24 24 C 1.54485 * 104.06345 * 118.64776 * 23 21 20 25 25 O 1.44418 * 104.80246 * 23.97534 * 24 23 21 26 26 C 1.44431 * 105.27968 * 319.49190 * 25 24 23 27 27 C 1.53119 * 109.16383 * 57.66015 * 19 18 17 28 28 C 1.46840 * 111.00056 * 293.62140 * 16 15 13 29 29 H 1.09002 * 109.47195 * 60.00052 * 1 2 3 30 30 H 1.08998 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47281 * 300.00123 * 1 2 3 32 32 H 1.08996 * 109.47281 * 239.99877 * 2 1 3 33 33 H 1.09002 * 109.47195 * 119.99948 * 2 1 3 34 34 H 1.09006 * 109.46651 * 29.99995 * 4 3 2 35 35 H 1.08993 * 109.47320 * 149.99867 * 4 3 2 36 36 H 0.97002 * 119.99687 * 180.02562 * 8 7 5 37 37 H 1.09006 * 109.46664 * 293.52941 * 15 13 3 38 38 H 1.09005 * 109.47183 * 53.52466 * 15 13 3 39 39 H 1.09001 * 109.46449 * 305.85999 * 17 16 15 40 40 H 1.09008 * 109.45901 * 65.82477 * 17 16 15 41 41 H 1.09005 * 109.49814 * 180.88157 * 18 17 16 42 42 H 1.08991 * 109.53453 * 60.78714 * 18 17 16 43 43 H 1.09001 * 109.52722 * 297.74956 * 19 18 17 44 44 H 1.09006 * 110.51144 * 237.29082 * 23 21 20 45 45 H 1.09000 * 110.51544 * 359.97438 * 23 21 20 46 46 H 1.08995 * 110.37219 * 142.81058 * 24 23 21 47 47 H 1.08998 * 110.36591 * 265.14449 * 24 23 21 48 48 H 1.09002 * 110.36667 * 281.68421 * 26 25 24 49 49 H 1.08990 * 110.37527 * 159.34275 * 26 25 24 50 50 H 1.09001 * 109.50264 * 182.40440 * 27 19 18 51 51 H 1.08994 * 109.53617 * 62.29632 * 27 19 18 52 52 H 1.09001 * 109.46318 * 294.17699 * 28 16 15 53 53 H 1.09005 * 109.46183 * 54.15243 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1491 2.3896 -2.8779 8 7 3.3488 3.1250 -3.6185 9 14 5.9135 2.0967 -3.4169 10 1 6.1417 0.6400 -3.5935 11 1 6.1607 2.7956 -4.7035 12 1 6.8406 2.6210 -2.3821 13 6 2.2429 2.0166 1.1671 14 8 2.6519 3.1584 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.4550 2.1468 3.5844 17 6 2.0051 1.6079 4.8742 18 6 2.3787 2.5821 5.9938 19 6 3.8967 2.7819 6.0044 20 8 4.2474 3.7335 7.0113 21 6 4.5171 3.1545 8.2895 22 1 4.8751 2.1312 8.1764 23 6 5.5484 4.0064 9.0628 24 6 4.7872 4.4601 10.3283 25 8 3.7483 3.4732 10.5076 26 6 3.2548 3.1943 9.1791 27 6 4.3454 3.2978 4.6344 28 6 3.9148 2.3028 3.5542 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6747 3.5148 -4.4448 37 1 0.9250 1.1134 2.5820 38 1 2.5349 0.3606 2.4814 39 1 0.9235 1.4744 4.8547 40 1 2.4864 0.6464 5.0537 41 1 2.0586 2.1744 6.9527 42 1 1.8868 3.5395 5.8230 43 1 4.3878 1.8317 6.2146 44 1 6.4152 3.4036 9.3341 45 1 5.8528 4.8689 8.4700 46 1 5.4548 4.4692 11.1898 47 1 4.3507 5.4470 10.1749 48 1 2.5833 3.9872 8.8497 49 1 2.7452 2.2311 9.1580 50 1 5.4304 3.4014 4.6220 51 1 3.8850 4.2666 4.4410 52 1 4.3870 1.3381 3.7400 53 1 4.2202 2.6743 2.5760 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361426317.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:54 Heat of formation + Delta-G solvation = -119.824370 kcal Electronic energy + Delta-G solvation = -30776.114189 eV Core-core repulsion = 26647.955956 eV Total energy + Delta-G solvation = -4128.158233 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.23684 -39.52807 -38.44445 -36.82032 -35.18937 -33.02899 -32.60762 -31.19707 -30.94287 -30.07639 -29.01551 -28.01411 -26.11770 -23.53232 -23.40196 -23.00624 -22.93625 -21.99012 -21.50237 -19.94805 -18.27727 -17.57940 -16.96384 -16.60225 -16.35035 -16.00874 -15.74924 -15.41999 -15.28156 -14.94595 -14.75073 -14.42246 -14.21168 -13.90706 -13.82400 -13.48236 -13.32109 -13.20517 -12.86416 -12.56141 -12.48055 -12.39684 -12.15516 -11.91828 -11.76445 -11.74671 -11.51135 -11.31271 -11.24257 -11.15025 -11.04971 -10.91786 -10.84394 -10.73304 -10.54511 -10.45220 -10.22478 -10.10839 -9.65293 -9.61897 -8.87247 -8.42626 -8.14741 -7.62499 -6.03483 -4.08283 3.18207 3.31080 3.35953 3.37292 3.47623 3.63735 3.71578 4.18222 4.19295 4.38875 4.45120 4.54138 4.66095 4.69120 4.82306 4.85405 4.97691 5.02545 5.13082 5.22578 5.25423 5.28710 5.30690 5.32826 5.35197 5.39826 5.44479 5.47136 5.50581 5.54036 5.55681 5.64254 5.65854 5.73629 5.81151 5.88455 6.02499 6.06665 6.17209 6.23220 6.32119 6.35721 6.47729 6.94569 7.03757 7.13746 7.19142 7.47622 7.58027 7.93251 8.24863 8.46644 8.91653 9.16142 9.56808 11.04450 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016280 B = 0.002287 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.462009 B =12241.501088 C =13515.614216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.505 3.495 14 O -0.522 6.522 15 C 0.038 3.962 16 N -0.519 5.519 17 C 0.059 3.941 18 C -0.136 4.136 19 C 0.088 3.912 20 O -0.365 6.365 21 C 0.056 3.944 22 H 0.075 0.925 23 C -0.157 4.157 24 C 0.045 3.955 25 O -0.375 6.375 26 C 0.024 3.976 27 C -0.109 4.109 28 C 0.056 3.944 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.031 0.969 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.093 0.907 50 H 0.071 0.929 51 H 0.084 0.916 52 H 0.026 0.974 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.327 -5.398 23.832 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.397 6.397 15 C -0.093 4.093 16 N -0.244 5.244 17 C -0.069 4.069 18 C -0.174 4.174 19 C 0.031 3.969 20 O -0.284 6.284 21 C -0.003 4.003 22 H 0.093 0.907 23 C -0.195 4.195 24 C -0.031 4.031 25 O -0.294 6.294 26 C -0.053 4.053 27 C -0.147 4.147 28 C -0.071 4.071 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.111 0.889 50 H 0.090 0.910 51 H 0.103 0.897 52 H 0.044 0.956 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.381 -4.098 23.738 24.129 hybrid contribution 1.281 -1.293 -0.509 1.890 sum -0.101 -5.391 23.229 23.847 Atomic orbital electron populations 1.22220 0.96823 1.01316 1.02374 1.21404 0.93504 0.84396 1.02493 1.48276 1.64176 1.13131 1.07730 1.19237 0.96113 0.93662 0.78098 1.21379 0.96944 1.31882 1.06190 0.92678 1.24932 0.97772 0.94974 0.96438 1.69926 1.35677 1.33419 1.14312 0.86578 0.84913 0.78177 0.77850 1.20335 1.21187 1.20198 1.20119 0.79030 0.87126 0.84679 1.90664 1.44538 1.17744 1.86791 1.22069 1.01734 0.94604 0.90927 1.61540 1.12627 1.49145 1.01089 1.22043 1.00614 0.95331 0.88898 1.22122 0.96315 1.01369 0.97619 1.22377 0.94585 0.91335 0.88608 1.88007 1.88704 1.33815 1.17826 1.23553 0.94628 0.97322 0.84768 0.90665 1.23047 0.98277 1.01498 0.96649 1.23415 0.89484 0.92446 0.97778 1.89136 1.53540 1.60284 1.26403 1.24030 0.96534 1.02144 0.82585 1.21611 1.01009 1.00918 0.91117 1.22189 0.86514 0.97123 1.01289 0.91996 0.92271 0.93085 0.90023 0.92004 0.95137 0.93889 0.92684 0.88518 0.92709 0.90349 0.95125 0.91679 0.89833 0.92508 0.89877 0.88887 0.88879 0.91849 0.90927 0.88922 0.91015 0.89720 0.95586 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.65 5.96 -4.04 -0.02 1.63 16 3 N -0.60 -12.40 2.46 -175.06 -0.43 -12.83 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.40 16 5 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 6 H 0.05 1.54 7.81 -52.48 -0.41 1.13 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.50 10.28 7.21 -10.99 -0.08 10.20 16 14 O -0.52 -12.93 14.29 5.55 0.08 -12.86 16 15 C 0.04 0.56 4.19 -4.98 -0.02 0.54 16 16 N -0.52 -7.52 4.35 -236.10 -1.03 -8.54 16 17 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 18 C -0.14 -1.38 5.59 -26.65 -0.15 -1.53 16 19 C 0.09 0.95 2.67 -26.61 -0.07 0.88 16 20 O -0.36 -3.99 9.63 -35.23 -0.34 -4.33 16 21 C 0.06 0.49 3.59 -25.16 -0.09 0.40 16 22 H 0.08 0.59 7.39 -51.93 -0.38 0.21 16 23 C -0.16 -1.18 6.90 -25.16 -0.17 -1.36 16 24 C 0.05 0.34 7.63 37.94 0.29 0.63 16 25 O -0.37 -3.72 11.65 -35.23 -0.41 -4.13 16 26 C 0.02 0.21 6.57 37.93 0.25 0.46 16 27 C -0.11 -1.41 5.75 -26.65 -0.15 -1.57 16 28 C 0.06 0.83 5.12 -3.84 -0.02 0.81 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.63 7.42 -51.93 -0.39 0.24 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.06 0.79 6.26 -51.93 -0.33 0.47 16 34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.10 1.22 7.26 -51.93 -0.38 0.85 16 38 H 0.06 0.72 7.03 -51.93 -0.36 0.36 16 39 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 40 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 41 H 0.06 0.53 7.20 -51.93 -0.37 0.16 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.55 7.38 -51.93 -0.38 0.17 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.73 8.00 -51.93 -0.42 0.31 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 49 H 0.09 0.68 7.91 -51.93 -0.41 0.27 16 50 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 51 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 52 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 53 H 0.10 1.93 6.05 -51.93 -0.31 1.61 16 LS Contribution 412.49 15.07 6.22 6.22 Total: -1.00 -33.33 412.49 -10.09 -43.43 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -9.57 Total: -0.76 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.33 Total: 2.87 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.72 Total: -47.19 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.67 Total: -21.32 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.33 -10.09 -43.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361426317.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.398 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds