Wall clock time and date at job start Sat Apr 11 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46500 * 120.00115 * 270.00004 * 3 2 1 5 5 C 1.50701 * 109.46973 * 89.99870 * 4 3 2 6 6 H 1.08006 * 119.99964 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00144 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00230 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47050 * 89.99657 * 9 7 5 11 11 H 1.48496 * 109.46861 * 209.99848 * 9 7 5 12 12 H 1.48501 * 109.46932 * 329.99712 * 9 7 5 13 13 C 1.34780 * 119.99743 * 90.00017 * 3 2 1 14 14 O 1.21279 * 119.99753 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00154 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47564 * 180.02562 * 15 13 3 17 17 C 1.46847 * 110.99556 * 294.21384 * 16 15 13 18 18 C 1.53048 * 109.52040 * 174.15847 * 17 16 15 19 19 C 1.53117 * 109.28057 * 59.17711 * 18 17 16 20 20 O 1.42899 * 109.52080 * 182.44127 * 19 18 17 21 21 C 1.42902 * 113.99774 * 269.68040 * 20 19 18 22 22 H 1.08998 * 110.45610 * 330.70461 * 21 20 19 23 23 C 1.54513 * 110.50715 * 208.10038 * 21 20 19 24 24 C 1.54486 * 104.05689 * 241.35422 * 23 21 20 25 25 O 1.44419 * 104.80289 * 23.98119 * 24 23 21 26 26 C 1.44783 * 105.30055 * 319.44999 * 25 24 23 27 27 C 1.53127 * 109.15683 * 302.34570 * 19 18 17 28 28 C 1.46845 * 111.00510 * 170.00002 * 16 15 13 29 29 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 34 34 H 1.08992 * 109.46978 * 209.99640 * 4 3 2 35 35 H 1.08993 * 109.47313 * 330.00169 * 4 3 2 36 36 H 0.96999 * 120.00362 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.47525 * 300.00358 * 15 13 3 38 38 H 1.09002 * 109.47555 * 59.99795 * 15 13 3 39 39 H 1.08999 * 109.46143 * 294.16871 * 17 16 15 40 40 H 1.08996 * 109.46758 * 54.14045 * 17 16 15 41 41 H 1.09001 * 109.49786 * 299.22938 * 18 17 16 42 42 H 1.08998 * 109.53420 * 179.13763 * 18 17 16 43 43 H 1.08994 * 109.57359 * 62.27630 * 19 18 17 44 44 H 1.09000 * 110.51209 * 359.97438 * 23 21 20 45 45 H 1.08995 * 110.50853 * 122.57872 * 23 21 20 46 46 H 1.09001 * 110.36844 * 142.81148 * 24 23 21 47 47 H 1.09002 * 110.37024 * 265.14712 * 24 23 21 48 48 H 1.08998 * 110.42444 * 281.78166 * 26 25 24 49 49 H 1.08999 * 110.48870 * 159.32597 * 26 25 24 50 50 H 1.08995 * 109.50036 * 297.70889 * 27 19 18 51 51 H 1.09002 * 109.52799 * 177.61586 * 27 19 18 52 52 H 1.09001 * 109.46129 * 305.85423 * 28 16 15 53 53 H 1.08998 * 109.46248 * 65.83587 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 1.0068 2.7823 -1.7037 6 1 0.1157 2.7247 -1.0961 7 6 0.9950 3.5048 -2.8778 8 7 2.0799 3.5745 -3.6180 9 14 -0.5619 4.3849 -3.4175 10 1 -0.5706 5.7616 -2.8607 11 1 -0.6048 4.4503 -4.9004 12 1 -1.7479 3.6424 -2.9202 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1600 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3099 2.2060 3.5889 17 6 3.7450 2.5156 3.6235 18 6 4.0159 3.5651 4.7040 19 6 3.5587 3.0233 6.0611 20 8 3.7568 4.0209 7.0649 21 6 5.0361 3.9613 7.6989 22 1 5.4114 2.9380 7.7041 23 6 4.9527 4.5146 9.1392 24 6 5.9113 5.7261 9.1317 25 8 5.9808 6.1332 7.7478 26 6 6.0360 4.9011 6.9895 27 6 2.0723 2.6634 5.9836 28 6 1.8578 1.6400 4.8663 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.0645 2.7984 -1.1383 35 1 2.5506 1.3452 -2.0284 36 1 2.0717 4.0832 -4.4439 37 1 0.9446 1.0113 2.5303 38 1 2.6228 0.4186 2.5299 39 1 4.3067 1.6091 3.8489 40 1 4.0563 2.9039 2.6538 41 1 3.4653 4.4768 4.4718 42 1 5.0831 3.7838 4.7403 43 1 4.1362 2.1337 6.3125 44 1 3.9359 4.8340 9.3673 45 1 5.2870 3.7649 9.8562 46 1 5.5085 6.5324 9.7447 47 1 6.8975 5.4318 9.4907 48 1 7.0408 4.4796 7.0212 49 1 5.7283 5.0737 5.9582 50 1 1.4912 3.5608 5.7718 51 1 1.7505 2.2374 6.9340 52 1 0.7984 1.3924 4.7991 53 1 2.4285 0.7377 5.0859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361426318.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:57 Heat of formation + Delta-G solvation = -141.593644 kcal Electronic energy + Delta-G solvation = -30904.716248 eV Core-core repulsion = 26775.614028 eV Total energy + Delta-G solvation = -4129.102220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.18611 -40.65564 -39.47461 -37.69570 -36.81527 -34.87479 -33.72297 -32.01188 -31.88882 -31.46807 -29.80509 -29.52091 -27.72183 -24.95467 -24.27212 -24.15525 -23.79859 -23.31773 -22.17424 -20.85158 -19.82306 -18.68021 -18.15356 -17.99335 -17.53225 -17.22274 -16.97190 -16.61280 -16.37542 -16.18160 -15.86599 -15.51721 -15.32362 -15.11314 -14.71985 -14.59287 -14.47300 -14.15402 -13.99020 -13.77997 -13.69391 -13.36174 -13.27750 -13.07634 -12.97818 -12.92750 -12.82021 -12.63830 -12.51565 -12.45914 -12.18733 -12.12735 -12.08058 -11.81530 -11.73276 -11.68244 -11.56362 -11.37635 -10.99371 -10.62703 -10.49155 -10.25506 -9.39151 -9.17770 -8.20386 -6.33102 1.34745 1.38497 1.47187 1.90120 2.27697 2.41524 2.57342 2.96862 3.01992 3.09236 3.57420 3.71846 3.77928 3.83087 3.91250 4.04009 4.07774 4.14969 4.19316 4.21711 4.27999 4.30854 4.37938 4.44258 4.46465 4.51748 4.54242 4.58925 4.68616 4.74791 4.79093 4.80679 4.87748 4.91226 4.95029 4.99440 5.05451 5.06691 5.08317 5.11673 5.19254 5.25411 5.32783 5.54040 5.63264 5.76801 5.89408 6.01016 6.10489 6.21534 6.33986 6.74881 6.88035 7.32435 7.59155 8.86643 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.002305 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.406603 B =12143.586837 C =13042.550248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.607 5.607 4 C 0.263 3.737 5 C -0.529 4.529 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.962 3.038 10 H -0.284 1.284 11 H -0.275 1.275 12 H -0.261 1.261 13 C 0.494 3.506 14 O -0.580 6.580 15 C 0.054 3.946 16 N -0.549 5.549 17 C 0.060 3.940 18 C -0.131 4.131 19 C 0.094 3.906 20 O -0.384 6.384 21 C 0.051 3.949 22 H 0.102 0.898 23 C -0.149 4.149 24 C 0.037 3.963 25 O -0.406 6.406 26 C 0.013 3.987 27 C -0.109 4.109 28 C 0.063 3.937 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.074 0.926 34 H -0.007 1.007 35 H 0.021 0.979 36 H 0.265 0.735 37 H 0.121 0.879 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.055 0.945 51 H 0.097 0.903 52 H 0.094 0.906 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.455 -10.939 27.255 29.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.339 5.339 4 C 0.141 3.859 5 C -0.568 4.568 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.210 1.210 11 H -0.200 1.200 12 H -0.185 1.185 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.076 4.076 16 N -0.275 5.275 17 C -0.068 4.068 18 C -0.169 4.169 19 C 0.037 3.963 20 O -0.303 6.303 21 C -0.007 4.007 22 H 0.120 0.880 23 C -0.186 4.186 24 C -0.039 4.039 25 O -0.326 6.326 26 C -0.063 4.063 27 C -0.147 4.147 28 C -0.064 4.064 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.012 0.988 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.139 0.861 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.133 0.867 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.105 0.895 49 H 0.100 0.900 50 H 0.073 0.927 51 H 0.115 0.885 52 H 0.112 0.888 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.339 -9.508 26.974 28.928 hybrid contribution 0.042 0.187 -1.161 1.177 sum 4.381 -9.321 25.812 27.791 Atomic orbital electron populations 1.22160 0.95567 1.02805 1.01625 1.21737 0.95177 0.81036 1.03805 1.48314 1.64375 1.15065 1.06151 1.18685 0.95261 0.91445 0.80472 1.21695 0.97928 1.31102 1.06030 0.92784 1.25829 0.99702 0.97125 0.96712 1.70049 1.29549 1.42608 1.14905 0.85501 0.79725 0.78601 0.77512 1.21029 1.20014 1.18537 1.21260 0.77451 0.86635 0.86382 1.90623 1.47583 1.20061 1.87717 1.21959 1.04378 0.93932 0.87360 1.61433 1.17510 1.45271 1.03301 1.22044 0.87496 0.97763 0.99476 1.22085 1.00989 0.98769 0.95028 1.22313 0.97519 0.90227 0.86276 1.88017 1.34053 1.55269 1.52984 1.23800 0.83984 1.00133 0.92809 0.88046 1.23106 1.01749 0.98783 0.94991 1.23648 0.99634 0.97537 0.83075 1.89198 1.95405 1.29120 1.18861 1.24317 0.99719 0.85418 0.96896 1.21626 0.94441 0.99575 0.99036 1.22146 1.01951 0.95669 0.86634 0.94520 0.92852 0.88920 0.87600 0.90740 0.98849 0.96108 0.92596 0.86112 0.89356 0.93303 0.92365 0.93586 0.90883 0.89878 0.90232 0.86737 0.88336 0.90203 0.89542 0.89992 0.92655 0.88491 0.88753 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 10.24 71.98 0.74 -3.77 16 2 C 0.10 3.04 5.98 86.38 0.52 3.56 16 3 N -0.61 -25.44 2.46 -826.19 -2.03 -27.47 16 4 C 0.26 14.32 5.20 85.63 0.45 14.77 16 5 C -0.53 -30.81 8.92 25.60 0.23 -30.58 16 6 H 0.05 3.13 7.42 -2.91 -0.02 3.10 16 7 C 0.00 0.28 5.46 84.65 0.46 0.74 16 8 N -0.93 -57.47 13.29 21.44 0.28 -57.18 16 9 Si 0.96 46.17 29.54 68.60 2.03 48.19 16 10 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.49 20.49 7.35 87.65 0.64 21.13 16 14 O -0.58 -30.60 13.90 -3.03 -0.04 -30.64 16 15 C 0.05 1.48 4.00 85.55 0.34 1.82 16 16 N -0.55 -15.32 4.40 -900.94 -3.96 -19.28 16 17 C 0.06 1.70 5.11 86.33 0.44 2.14 16 18 C -0.13 -3.40 5.21 30.65 0.16 -3.24 16 19 C 0.09 1.86 2.68 30.68 0.08 1.94 16 20 O -0.38 -8.40 9.64 -148.98 -1.44 -9.84 16 21 C 0.05 0.80 3.57 31.61 0.11 0.92 16 22 H 0.10 1.06 7.42 -2.39 -0.02 1.04 16 23 C -0.15 -1.85 6.90 31.61 0.22 -1.63 16 24 C 0.04 0.53 7.63 72.49 0.55 1.08 16 25 O -0.41 -9.51 11.66 -148.98 -1.74 -11.25 16 26 C 0.01 0.25 7.18 72.48 0.52 0.77 16 27 C -0.11 -2.08 5.75 30.65 0.18 -1.91 16 28 C 0.06 1.16 5.46 86.32 0.47 1.63 16 29 H 0.04 1.30 7.26 -2.39 -0.02 1.28 16 30 H 0.05 1.41 7.22 -2.39 -0.02 1.39 16 31 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.11 2.12 6.44 -2.39 -0.02 2.10 16 33 H 0.07 2.16 7.89 -2.39 -0.02 2.15 16 34 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 35 H 0.02 1.15 7.89 -2.39 -0.02 1.13 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.12 2.77 7.03 -2.39 -0.02 2.75 16 38 H 0.09 1.82 7.38 -2.39 -0.02 1.80 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 2.20 5.78 -2.39 -0.01 2.19 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 1.72 6.38 -2.39 -0.02 1.70 16 43 H 0.08 1.21 7.39 -2.39 -0.02 1.19 16 44 H 0.08 1.18 8.00 -2.39 -0.02 1.16 16 45 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.08 1.87 5.95 -2.39 -0.01 1.85 16 50 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.09 1.50 8.01 -2.39 -0.02 1.48 16 53 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -82.04 407.46 0.09 -81.95 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.88 Total: 16.15 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 6.11 Total: 9.37 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -5.71 Total: -103.93 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -3.22 Total: -51.73 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -82.04 0.09 -81.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361426318.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.649 kcal (2) G-P(sol) polarization free energy of solvation -82.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds