Wall clock time and date at job start Sat Apr 11 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46849 * 2 1 4 4 C 1.50702 * 109.46967 * 119.99342 * 2 1 3 5 5 O 1.21285 * 119.99753 * 103.77278 * 4 2 1 6 6 N 1.34779 * 120.00409 * 283.77248 * 4 2 1 7 7 C 1.46496 * 119.99896 * 0.02562 * 6 4 2 8 8 C 1.46500 * 119.99751 * 179.97438 * 6 4 2 9 9 C 1.50708 * 109.46909 * 90.00253 * 8 6 4 10 10 H 1.08001 * 119.99928 * 359.97438 * 9 8 6 11 11 C 1.37868 * 119.99859 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00294 * 180.02562 * 11 9 8 13 13 Si 1.86808 * 120.00078 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47011 * 90.00209 * 13 11 9 15 15 H 1.48501 * 109.47070 * 209.99744 * 13 11 9 16 16 H 1.48497 * 109.47091 * 330.00011 * 13 11 9 17 17 N 1.46900 * 109.47399 * 239.99756 * 2 1 3 18 18 C 1.46845 * 111.00090 * 312.33657 * 17 2 1 19 19 C 1.53035 * 109.51530 * 185.84447 * 18 17 2 20 20 C 1.53114 * 109.27805 * 300.80251 * 19 18 17 21 21 O 1.42895 * 109.57539 * 177.59908 * 20 19 18 22 22 C 1.42902 * 113.99980 * 90.29808 * 21 20 19 23 23 H 1.09000 * 110.45517 * 330.70291 * 22 21 20 24 24 C 1.54512 * 110.51497 * 208.09681 * 22 21 20 25 25 C 1.54478 * 104.06324 * 241.35593 * 24 22 21 26 26 O 1.44422 * 104.80253 * 23.97739 * 25 24 22 27 27 C 1.44785 * 105.29650 * 319.45182 * 26 25 24 28 28 C 1.53125 * 109.15127 * 57.66944 * 20 19 18 29 29 C 1.46845 * 110.99831 * 76.54397 * 17 2 1 30 30 H 1.09003 * 109.46849 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47583 * 299.99814 * 1 2 3 32 32 H 1.08998 * 109.47074 * 60.00640 * 1 2 3 33 33 H 1.09001 * 109.47360 * 89.99639 * 7 6 4 34 34 H 1.08995 * 109.47264 * 210.00168 * 7 6 4 35 35 H 1.09004 * 109.47355 * 329.99863 * 7 6 4 36 36 H 1.09002 * 109.46534 * 209.99652 * 8 6 4 37 37 H 1.09000 * 109.47311 * 329.99925 * 8 6 4 38 38 H 0.97002 * 120.00622 * 180.02562 * 12 11 9 39 39 H 1.09005 * 109.46111 * 305.85586 * 18 17 2 40 40 H 1.09005 * 109.46379 * 65.82722 * 18 17 2 41 41 H 1.08994 * 109.50086 * 60.75361 * 19 18 17 42 42 H 1.09002 * 109.50028 * 180.87435 * 19 18 17 43 43 H 1.08995 * 109.53640 * 297.76954 * 20 19 18 44 44 H 1.08999 * 110.50490 * 0.02562 * 24 22 21 45 45 H 1.09001 * 110.50846 * 122.57004 * 24 22 21 46 46 H 1.09000 * 110.36985 * 142.80997 * 25 24 22 47 47 H 1.08999 * 110.36741 * 265.14530 * 25 24 22 48 48 H 1.08999 * 110.42654 * 281.77689 * 27 26 25 49 49 H 1.09006 * 110.48545 * 159.32906 * 27 26 25 50 50 H 1.09005 * 109.50381 * 182.39564 * 28 20 19 51 51 H 1.09004 * 109.50116 * 62.28097 * 28 20 19 52 52 H 1.09000 * 109.46833 * 294.18034 * 29 17 2 53 53 H 1.09004 * 109.46004 * 54.16010 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.4702 -1.8380 1.1435 6 7 1.9950 -0.0924 2.4278 7 6 1.4655 1.2695 2.5330 8 6 2.4828 -0.7833 3.6241 9 6 3.9514 -0.4977 3.8053 10 1 4.4696 0.1348 3.0996 11 6 4.6334 -1.0438 4.8718 12 7 5.9149 -0.7942 5.0303 13 14 3.7369 -2.1371 6.0927 14 1 3.8128 -3.5497 5.6408 15 1 4.3712 -2.0103 7.4294 16 1 2.3141 -1.7206 6.1783 17 7 2.0197 -0.6925 -1.1994 18 6 1.3247 -1.9721 -1.3889 19 6 1.9582 -2.7298 -2.5579 20 6 1.8552 -1.8791 -3.8268 21 8 2.4945 -2.5565 -4.9105 22 6 1.6248 -3.4113 -5.6556 23 1 0.8285 -3.7943 -5.0174 24 6 2.4204 -4.5760 -6.2865 25 6 2.2174 -4.3892 -7.8065 26 8 1.9125 -2.9869 -7.9685 27 6 1.0324 -2.6576 -6.8670 28 6 2.5447 -0.5332 -3.5867 29 6 1.8944 0.1609 -2.3878 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 0.3934 1.2287 2.7251 34 1 1.9619 1.7899 3.3520 35 1 1.6475 1.8031 1.6002 36 1 1.9336 -0.4300 4.4969 37 1 2.3327 -1.8569 3.5103 38 1 6.3948 -1.1787 5.7804 39 1 1.4090 -2.5692 -0.4808 40 1 0.2726 -1.7856 -1.6044 41 1 3.0069 -2.9286 -2.3370 42 1 1.4322 -3.6726 -2.7083 43 1 0.8058 -1.7125 -4.0697 44 1 3.4769 -4.4999 -6.0297 45 1 2.0173 -5.5347 -5.9602 46 1 3.1301 -4.6438 -8.3452 47 1 1.3861 -5.0012 -8.1562 48 1 0.0199 -3.0052 -7.0721 49 1 1.0358 -1.5830 -6.6840 50 1 2.4378 0.0936 -4.4721 51 1 3.6027 -0.6977 -3.3821 52 1 0.8397 0.3375 -2.5986 53 1 2.3927 1.1130 -2.2054 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361435474.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:00 Heat of formation + Delta-G solvation = -134.759124 kcal Electronic energy + Delta-G solvation = -31119.917889 eV Core-core repulsion = 26991.112036 eV Total energy + Delta-G solvation = -4128.805853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.42863 -40.67849 -39.52654 -37.83340 -36.54698 -34.90654 -34.30631 -32.23974 -31.87371 -30.88214 -29.79387 -29.37013 -27.44610 -26.12523 -24.73312 -24.38012 -23.68209 -22.80316 -22.08342 -20.63336 -19.80817 -19.13272 -18.32024 -17.95383 -17.47311 -17.35460 -16.87304 -16.54298 -16.34913 -16.12128 -15.69897 -15.65986 -15.46040 -15.26097 -14.72518 -14.66934 -14.46943 -14.18498 -13.95465 -13.72244 -13.64030 -13.43347 -13.33359 -13.15315 -13.11898 -12.92672 -12.88593 -12.66164 -12.55632 -12.49328 -12.40641 -12.14503 -12.03692 -11.89395 -11.81010 -11.73484 -11.69541 -11.39756 -10.93892 -10.83375 -10.45857 -10.22352 -9.36652 -9.11261 -8.33688 -6.38651 1.31394 1.36109 1.44425 1.84902 2.27444 2.30793 2.57241 2.98828 2.99496 3.00808 3.55482 3.66851 3.77512 3.82965 3.90397 4.00554 4.03571 4.06930 4.15625 4.17461 4.26360 4.31972 4.35525 4.43046 4.47878 4.53683 4.57384 4.63376 4.70179 4.72141 4.76864 4.77757 4.80645 4.86586 4.89452 4.92656 4.94499 4.99057 5.00030 5.04809 5.12042 5.19188 5.19497 5.33768 5.46738 5.65179 5.75255 6.04219 6.23008 6.26361 6.34087 6.62965 6.77159 7.22496 7.51330 8.83568 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.002290 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.599758 B =12223.200248 C =12969.535959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.075 3.925 3 H 0.118 0.882 4 C 0.502 3.498 5 O -0.579 6.579 6 N -0.609 5.609 7 C 0.076 3.924 8 C 0.226 3.774 9 C -0.533 4.533 10 H 0.025 0.975 11 C 0.007 3.993 12 N -0.947 5.947 13 Si 0.951 3.049 14 H -0.278 1.278 15 H -0.275 1.275 16 H -0.236 1.236 17 N -0.547 5.547 18 C 0.061 3.939 19 C -0.130 4.130 20 C 0.095 3.905 21 O -0.386 6.386 22 C 0.048 3.952 23 H 0.093 0.907 24 C -0.156 4.156 25 C 0.043 3.957 26 O -0.402 6.402 27 C 0.023 3.977 28 C -0.110 4.110 29 C 0.062 3.938 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.016 0.984 38 H 0.268 0.732 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.052 0.948 52 H 0.063 0.937 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.367 -0.246 -22.458 29.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.036 4.036 3 H 0.136 0.864 4 C 0.291 3.709 5 O -0.459 6.459 6 N -0.341 5.341 7 C -0.066 4.066 8 C 0.103 3.897 9 C -0.572 4.572 10 H 0.043 0.957 11 C -0.190 4.190 12 N -0.587 5.587 13 Si 0.773 3.227 14 H -0.204 1.204 15 H -0.200 1.200 16 H -0.159 1.159 17 N -0.272 5.272 18 C -0.067 4.067 19 C -0.168 4.168 20 C 0.038 3.962 21 O -0.306 6.306 22 C -0.010 4.010 23 H 0.111 0.889 24 C -0.194 4.194 25 C -0.033 4.033 26 O -0.321 6.321 27 C -0.053 4.053 28 C -0.148 4.148 29 C -0.065 4.065 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.123 0.877 46 H 0.116 0.884 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.113 0.887 50 H 0.110 0.890 51 H 0.071 0.929 52 H 0.081 0.919 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.227 -0.771 -22.527 28.988 hybrid contribution -0.109 -0.629 1.108 1.278 sum -18.336 -1.399 -21.419 28.230 Atomic orbital electron populations 1.22339 0.92423 1.03181 1.04992 1.21597 0.96200 0.98157 0.87653 0.86439 1.21248 0.78012 0.86520 0.85144 1.90586 1.47835 1.21644 1.85814 1.47944 1.61413 1.17031 1.07681 1.22026 0.99466 0.81333 1.03781 1.19288 0.92874 0.92995 0.84524 1.21571 0.94913 1.30559 1.10167 0.95697 1.25904 0.95573 0.97565 1.00006 1.70062 1.10167 1.46562 1.31953 0.85679 0.80413 0.78787 0.77809 1.20384 1.19984 1.15867 1.61602 1.58386 1.04719 1.02538 1.22089 0.95500 0.90509 0.98591 1.22013 1.01141 0.98977 0.94696 1.22219 0.96902 0.91829 0.85253 1.88038 1.37456 1.60940 1.44149 1.23734 0.93250 0.90706 0.93332 0.88885 1.23117 1.02044 0.98419 0.95775 1.23571 1.02203 0.82405 0.95135 1.89175 1.67643 1.26585 1.48700 1.24163 0.94089 1.01623 0.85448 1.21626 1.00198 0.94933 0.98060 1.22139 1.00412 0.95903 0.87999 0.92587 0.89927 0.88710 0.89929 0.91753 0.89421 0.93152 0.96561 0.92330 0.91857 0.92570 0.93734 0.90579 0.89994 0.90933 0.87650 0.88421 0.90070 0.89257 0.88743 0.88999 0.92947 0.91891 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 8.21 71.98 0.59 -2.59 16 2 C 0.08 2.06 1.93 44.17 0.09 2.14 16 3 H 0.12 2.78 6.23 -2.39 -0.01 2.77 16 4 C 0.50 20.34 6.84 87.66 0.60 20.94 16 5 O -0.58 -29.44 13.86 -3.04 -0.04 -29.48 16 6 N -0.61 -24.55 2.86 -851.12 -2.43 -26.98 16 7 C 0.08 2.09 9.36 127.77 1.20 3.28 16 8 C 0.23 11.10 4.23 85.64 0.36 11.46 16 9 C -0.53 -32.10 9.94 25.60 0.25 -31.84 16 10 H 0.02 1.69 8.06 -2.91 -0.02 1.66 16 11 C 0.01 0.43 5.47 84.65 0.46 0.89 16 12 N -0.95 -61.23 13.96 21.44 0.30 -60.93 16 13 Si 0.95 45.17 27.47 68.60 1.88 47.05 16 14 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 15 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 17 N -0.55 -15.36 4.36 -875.52 -3.82 -19.18 16 18 C 0.06 1.63 4.17 86.33 0.36 1.99 16 19 C -0.13 -3.26 5.72 30.64 0.18 -3.08 16 20 C 0.10 1.91 2.52 30.67 0.08 1.99 16 21 O -0.39 -8.67 9.63 -148.98 -1.44 -10.10 16 22 C 0.05 0.77 3.38 31.61 0.11 0.87 16 23 H 0.09 1.15 7.80 -2.39 -0.02 1.13 16 24 C -0.16 -2.29 6.90 31.61 0.22 -2.07 16 25 C 0.04 0.59 7.63 72.48 0.55 1.15 16 26 O -0.40 -8.01 11.66 -148.98 -1.74 -9.74 16 27 C 0.02 0.35 7.40 72.48 0.54 0.88 16 28 C -0.11 -2.28 5.75 30.65 0.18 -2.11 16 29 C 0.06 1.22 5.22 86.32 0.45 1.67 16 30 H 0.06 1.18 6.44 -2.39 -0.02 1.16 16 31 H 0.08 1.35 6.47 -2.39 -0.02 1.34 16 32 H 0.09 1.19 7.09 -2.39 -0.02 1.18 16 33 H 0.08 1.67 7.45 -2.39 -0.02 1.66 16 34 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 35 H 0.09 1.90 6.02 -2.38 -0.01 1.89 16 36 H 0.05 2.25 7.13 -2.39 -0.02 2.23 16 37 H 0.02 0.86 6.85 -2.39 -0.02 0.85 16 38 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 39 H 0.06 2.24 5.87 -2.38 -0.01 2.23 16 40 H 0.06 1.17 6.59 -2.38 -0.02 1.16 16 41 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 43 H 0.08 1.21 7.80 -2.39 -0.02 1.20 16 44 H 0.07 1.34 8.00 -2.39 -0.02 1.32 16 45 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 48 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.09 1.40 8.09 -2.38 -0.02 1.38 16 50 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 51 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 52 H 0.06 0.88 7.13 -2.39 -0.02 0.86 16 53 H 0.09 1.59 7.95 -2.39 -0.02 1.57 16 Total: -1.00 -84.68 401.64 -0.25 -84.93 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.83 Total: 18.84 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 6.20 Total: 5.58 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -5.95 Total: -107.08 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -3.21 Total: -49.32 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.05 kcal Total: -84.68 -0.25 -84.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361435474.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.825 kcal (2) G-P(sol) polarization free energy of solvation -84.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds