Wall clock time and date at job start Sat Apr 11 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47593 * 2 1 4 4 O 1.42903 * 109.46715 * 120.00454 * 2 1 3 5 5 C 1.42905 * 113.99616 * 269.99692 * 4 2 1 6 6 C 1.53005 * 109.46702 * 180.02562 * 5 4 2 7 7 H 1.08996 * 110.67428 * 307.96118 * 6 5 4 8 8 C 1.55000 * 110.61500 * 185.00099 * 6 5 4 9 9 C 1.54806 * 102.09319 * 204.47212 * 8 6 5 10 10 C 1.54105 * 104.18342 * 20.88044 * 9 8 6 11 11 O 1.43736 * 107.42537 * 1.95479 * 10 9 8 12 12 C 1.50702 * 109.47340 * 239.99783 * 2 1 3 13 13 O 1.21272 * 120.00158 * 245.00708 * 12 2 1 14 14 N 1.34783 * 119.99610 * 65.00307 * 12 2 1 15 15 C 1.46500 * 119.99902 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47092 * 180.02562 * 15 14 12 17 17 C 1.53042 * 109.46021 * 295.06855 * 16 15 14 18 18 C 1.53195 * 109.31164 * 178.61740 * 17 16 15 19 19 N 1.46918 * 108.77619 * 54.63468 * 18 17 16 20 20 C 1.36944 * 120.63363 * 126.37049 * 19 18 17 21 21 H 1.07993 * 120.00146 * 207.69497 * 20 19 18 22 22 C 1.38814 * 119.99457 * 27.69290 * 20 19 18 23 23 N 1.31621 * 120.00064 * 17.35919 * 22 20 19 24 24 Si 1.86805 * 119.99748 * 197.35081 * 22 20 19 25 25 H 1.48493 * 109.46693 * 90.00476 * 24 22 20 26 26 H 1.48493 * 109.46954 * 210.00409 * 24 22 20 27 27 H 1.48503 * 109.46947 * 330.00146 * 24 22 20 28 28 C 1.46929 * 118.74162 * 306.38750 * 19 18 17 29 29 C 1.53041 * 109.46144 * 174.99899 * 16 15 14 30 30 H 1.09003 * 109.46504 * 60.00162 * 1 2 3 31 31 H 1.09003 * 109.47544 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47074 * 299.99949 * 1 2 3 33 33 H 1.08997 * 109.47294 * 60.00173 * 5 4 2 34 34 H 1.09002 * 109.47282 * 300.00086 * 5 4 2 35 35 H 1.08998 * 110.90664 * 86.27463 * 8 6 5 36 36 H 1.09003 * 110.93546 * 322.69113 * 8 6 5 37 37 H 1.08993 * 110.48920 * 262.20743 * 9 8 6 38 38 H 1.09002 * 110.48651 * 139.55326 * 9 8 6 39 39 H 1.09002 * 109.87755 * 121.45527 * 10 9 8 40 40 H 1.08996 * 109.87405 * 242.45107 * 10 9 8 41 41 H 0.96999 * 119.99865 * 0.02562 * 14 12 2 42 42 H 1.09007 * 109.47108 * 300.00429 * 15 14 12 43 43 H 1.09002 * 109.47047 * 59.99912 * 15 14 12 44 44 H 1.09000 * 109.46290 * 55.02794 * 16 15 14 45 45 H 1.09004 * 109.49121 * 298.56439 * 17 16 15 46 46 H 1.08992 * 109.49957 * 58.66373 * 17 16 15 47 47 H 1.08999 * 109.58611 * 294.84246 * 18 17 16 48 48 H 1.09004 * 109.58455 * 174.41996 * 18 17 16 49 49 H 0.96999 * 119.99654 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.58361 * 293.82798 * 28 19 18 51 51 H 1.08997 * 109.58955 * 173.39739 * 28 19 18 52 52 H 1.08998 * 109.49664 * 301.33854 * 29 16 15 53 53 H 1.09004 * 109.49924 * 61.39698 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6738 1.1668 5 6 2.2000 0.1828 2.2941 6 6 2.7089 -0.6408 3.4789 7 1 2.0625 -1.5004 3.6559 8 6 2.8091 0.2381 4.7517 9 6 3.8765 -0.5148 5.5825 10 6 4.6340 -1.3640 4.5433 11 8 4.0712 -1.0694 3.2540 12 6 2.0324 -0.7105 -1.2304 13 8 2.6529 -1.7467 -1.1214 14 7 1.7920 -0.1941 -2.4520 15 6 2.2798 -0.8850 -3.6482 16 6 1.8758 -0.0944 -4.8942 17 6 0.3507 -0.0884 -5.0219 18 6 -0.0515 0.7329 -6.2509 19 7 0.6503 0.1997 -7.4263 20 6 -0.0452 -0.1662 -8.5478 21 1 0.3471 -0.9316 -9.2008 22 6 -1.2547 0.4468 -8.8451 23 7 -1.5728 1.5879 -8.2713 24 14 -2.4307 -0.3477 -10.0597 25 1 -3.3538 -1.2559 -9.3330 26 1 -3.2157 0.7067 -10.7506 27 1 -1.6574 -1.1253 -11.0611 28 6 2.1126 0.0662 -7.3757 29 6 2.4906 -0.7477 -6.1341 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.2537 0.6546 2.5589 34 1 2.9319 0.9512 2.0451 35 1 1.8558 0.2686 5.2793 36 1 3.1471 1.2445 4.5044 37 1 3.4002 -1.1555 6.3246 38 1 4.5528 0.1913 6.0643 39 1 5.6927 -1.1048 4.5537 40 1 4.5097 -2.4232 4.7688 41 1 1.2959 0.6349 -2.5391 42 1 3.3662 -0.9638 -3.6047 43 1 1.8448 -1.8834 -3.6940 44 1 2.2368 0.9304 -4.8069 45 1 -0.0089 -1.1112 -5.1342 46 1 -0.0874 0.3558 -4.1282 47 1 0.2274 1.7759 -6.1007 48 1 -1.1283 0.6588 -6.4034 49 1 -2.4177 2.0163 -8.4794 50 1 2.5680 1.0548 -7.3172 51 1 2.4638 -0.4479 -8.2704 52 1 3.5755 -0.7727 -6.0320 53 1 2.1113 -1.7645 -6.2356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362411278.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:19 Heat of formation + Delta-G solvation = -142.653382 kcal Electronic energy + Delta-G solvation = -29928.007954 eV Core-core repulsion = 25798.859781 eV Total energy + Delta-G solvation = -4129.148173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.14379 -40.39320 -39.45289 -38.42379 -36.37770 -34.62465 -33.30119 -32.97860 -32.14319 -31.50088 -30.96181 -28.42089 -26.63861 -25.98684 -24.65922 -23.79602 -22.67875 -22.56536 -22.19316 -21.42825 -20.60871 -18.75570 -18.38055 -18.12794 -17.64949 -16.98043 -16.80656 -16.67524 -16.28613 -16.25025 -15.76121 -15.43661 -15.36401 -15.27372 -14.88929 -14.58408 -14.52944 -14.15212 -13.99561 -13.89239 -13.60963 -13.36621 -13.26200 -13.06394 -12.99784 -12.82181 -12.66748 -12.56915 -12.43740 -12.28041 -12.19465 -12.04339 -11.94974 -11.82850 -11.60042 -11.55176 -11.23282 -11.12125 -10.99937 -10.65089 -10.52462 -10.48085 -10.10121 -8.65678 -7.86375 -5.30289 1.46597 1.48374 1.56541 1.56809 1.84665 2.51977 2.80954 2.91181 3.27612 3.61005 3.67825 3.72878 3.86057 3.86288 3.92411 3.96043 3.99406 4.06192 4.08202 4.15629 4.25445 4.38227 4.51290 4.53956 4.54562 4.55389 4.68386 4.70177 4.74962 4.76402 4.82418 4.83394 4.89947 4.92996 4.94494 5.05285 5.06445 5.18601 5.20289 5.20956 5.25965 5.30165 5.40661 5.43537 5.57509 5.68067 5.81710 5.94649 6.09834 6.41326 6.55509 7.17653 7.22060 7.89821 8.39908 9.19533 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028610 B = 0.001746 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.454186 B =16028.786142 C =16580.396154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.073 3.927 3 H 0.117 0.883 4 O -0.386 6.386 5 C 0.061 3.939 6 C 0.068 3.932 7 H 0.070 0.930 8 C -0.139 4.139 9 C -0.150 4.150 10 C 0.032 3.968 11 O -0.404 6.404 12 C 0.506 3.494 13 O -0.577 6.577 14 N -0.711 5.711 15 C 0.136 3.864 16 C -0.077 4.077 17 C -0.121 4.121 18 C 0.175 3.825 19 N -0.612 5.612 20 C -0.263 4.263 21 H 0.063 0.937 22 C -0.049 4.049 23 N -0.932 5.932 24 Si 0.963 3.037 25 H -0.287 1.287 26 H -0.294 1.294 27 H -0.271 1.271 28 C 0.141 3.859 29 C -0.116 4.116 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.415 0.585 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.002 0.998 48 H 0.051 0.949 49 H 0.250 0.750 50 H 0.018 0.982 51 H 0.051 0.949 52 H 0.082 0.918 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.291 1.568 28.851 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 H 0.134 0.866 4 O -0.305 6.305 5 C -0.015 4.015 6 C 0.011 3.989 7 H 0.088 0.912 8 C -0.176 4.176 9 C -0.187 4.187 10 C -0.044 4.044 11 O -0.325 6.325 12 C 0.293 3.707 13 O -0.455 6.455 14 N -0.365 5.365 15 C 0.012 3.988 16 C -0.096 4.096 17 C -0.160 4.160 18 C 0.050 3.950 19 N -0.336 5.336 20 C -0.393 4.393 21 H 0.080 0.920 22 C -0.244 4.244 23 N -0.578 5.578 24 Si 0.792 3.208 25 H -0.214 1.214 26 H -0.220 1.220 27 H -0.196 1.196 28 C 0.016 3.984 29 C -0.156 4.156 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.252 0.748 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.093 0.907 47 H 0.020 0.980 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.036 0.964 51 H 0.069 0.931 52 H 0.101 0.899 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.762 0.698 28.686 29.726 hybrid contribution -0.990 0.080 -0.965 1.385 sum 6.772 0.779 27.721 28.546 Atomic orbital electron populations 1.22248 0.91535 1.03352 1.05216 1.22014 0.96298 0.96748 0.83696 0.86572 1.88070 1.86907 1.35584 1.19958 1.22883 1.01175 0.92492 0.84988 1.23372 0.84092 0.96994 0.94464 0.91216 1.23104 1.01212 0.99451 0.93870 1.22938 0.98153 0.99529 0.98111 1.23350 0.99031 0.99327 0.82709 1.89027 1.26568 1.87771 1.29089 1.21069 0.79018 0.85121 0.85505 1.90698 1.41950 1.25646 1.87244 1.45889 1.57573 1.28163 1.04841 1.21300 0.98850 0.95520 0.83095 1.21157 0.95746 0.99701 0.93012 1.22051 0.95334 1.00117 0.98454 1.20621 0.96883 0.92814 0.84713 1.44339 1.01577 1.75293 1.12374 1.19509 1.03178 1.14168 1.02457 0.91978 1.25715 1.01803 0.95931 1.00976 1.70168 1.23469 1.16346 1.47852 0.85330 0.79150 0.77452 0.78915 1.21369 1.22044 1.19590 1.21040 0.84061 0.96697 0.96609 1.21866 1.00311 0.99064 0.94353 0.89215 0.92937 0.88717 0.88365 0.91963 0.87628 0.89383 0.89274 0.88867 0.89415 0.92544 0.74803 0.91640 0.92980 0.90147 0.93861 0.90710 0.97958 0.93028 0.94114 0.96368 0.93075 0.89942 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.48 71.98 0.68 -1.76 16 2 C 0.07 1.45 3.13 29.85 0.09 1.54 16 3 H 0.12 1.53 7.79 -2.39 -0.02 1.51 16 4 O -0.39 -9.59 9.53 -129.07 -1.23 -10.82 16 5 C 0.06 0.97 5.49 71.98 0.40 1.37 16 6 C 0.07 1.14 3.62 31.28 0.11 1.26 16 7 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 8 C -0.14 -1.21 6.59 31.90 0.21 -1.00 16 9 C -0.15 -1.28 7.01 31.58 0.22 -1.06 16 10 C 0.03 0.49 7.69 72.36 0.56 1.05 16 11 O -0.40 -9.55 11.24 -148.98 -1.68 -11.23 16 12 C 0.51 14.06 7.18 87.66 0.63 14.69 16 13 O -0.58 -22.31 16.51 15.99 0.26 -22.05 16 14 N -0.71 -16.72 5.23 -463.06 -2.42 -19.15 16 15 C 0.14 3.71 5.06 86.38 0.44 4.15 16 16 C -0.08 -2.26 2.19 -10.77 -0.02 -2.28 16 17 C -0.12 -4.14 5.25 30.67 0.16 -3.98 16 18 C 0.18 8.07 5.31 86.37 0.46 8.52 16 19 N -0.61 -30.25 2.99 -699.10 -2.09 -32.34 16 20 C -0.26 -14.47 9.59 84.03 0.81 -13.67 16 21 H 0.06 3.38 7.89 -2.91 -0.02 3.35 16 22 C -0.05 -2.71 4.91 84.86 0.42 -2.30 16 23 N -0.93 -54.35 11.19 21.65 0.24 -54.11 16 24 Si 0.96 44.90 29.59 68.60 2.03 46.93 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 28 C 0.14 5.70 6.52 86.36 0.56 6.26 16 29 C -0.12 -3.73 5.36 30.67 0.16 -3.56 16 30 H 0.09 1.07 7.93 -2.39 -0.02 1.05 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 0.91 7.87 -2.39 -0.02 0.89 16 33 H 0.10 0.87 7.87 -2.39 -0.02 0.86 16 34 H 0.06 0.94 8.09 -2.39 -0.02 0.92 16 35 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.09 0.65 8.06 -2.39 -0.02 0.63 16 37 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.41 7.41 7.43 -92.71 -0.69 6.72 16 42 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.04 1.61 8.14 -2.38 -0.02 1.60 16 46 H 0.07 2.11 7.15 -2.39 -0.02 2.10 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.05 2.74 6.04 -2.39 -0.01 2.72 16 49 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 50 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.05 2.05 7.93 -2.39 -0.02 2.04 16 52 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 53 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -78.01 416.45 1.18 -76.83 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.18 Total: 16.72 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 5.88 Total: 9.22 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -4.27 Total: -105.60 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -2.64 Total: -44.09 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -78.01 1.18 -76.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362411278.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.827 kcal (2) G-P(sol) polarization free energy of solvation -78.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds