Wall clock time and date at job start Sat Apr 11 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47603 * 2 1 4 4 C 1.50697 * 109.47194 * 239.99409 * 2 1 3 5 5 O 1.21281 * 119.99879 * 251.16401 * 4 2 1 6 6 N 1.34775 * 120.00002 * 71.16588 * 4 2 1 7 7 C 1.46499 * 119.99659 * 4.97207 * 6 4 2 8 8 C 1.46492 * 119.99942 * 184.97775 * 6 4 2 9 9 C 1.50699 * 109.47336 * 89.99755 * 8 6 4 10 10 H 1.07999 * 120.00385 * 0.02562 * 9 8 6 11 11 C 1.37882 * 119.99808 * 179.97438 * 9 8 6 12 12 N 1.31508 * 120.00231 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99700 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47062 * 60.00226 * 13 11 9 15 15 H 1.48501 * 109.47027 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47268 * 300.00103 * 13 11 9 17 17 N 1.46906 * 109.46642 * 119.99621 * 2 1 3 18 18 C 1.47011 * 110.99964 * 58.95266 * 17 2 1 19 19 C 1.53097 * 109.25554 * 177.60770 * 18 17 2 20 20 O 1.43017 * 109.26378 * 56.84743 * 19 18 17 21 21 C 1.43013 * 113.73706 * 301.33596 * 20 19 18 22 22 H 1.09005 * 109.50389 * 298.72665 * 21 20 19 23 23 C 1.52992 * 109.50837 * 178.60349 * 21 20 19 24 24 O 1.42902 * 109.47326 * 65.20928 * 23 21 20 25 25 C 1.42907 * 114.00114 * 180.02562 * 24 23 21 26 26 C 1.53002 * 109.47039 * 180.02562 * 25 24 23 27 27 C 1.52992 * 117.49821 * 243.62014 * 26 25 24 28 28 C 1.52997 * 60.00214 * 252.51440 * 27 26 25 29 29 C 1.47011 * 110.99873 * 295.31585 * 17 2 1 30 30 H 1.08994 * 109.47646 * 188.18119 * 1 2 3 31 31 H 1.09002 * 109.46818 * 308.18473 * 1 2 3 32 32 H 1.08998 * 109.46767 * 68.17555 * 1 2 3 33 33 H 1.09000 * 109.46848 * 94.57678 * 7 6 4 34 34 H 1.09007 * 109.47029 * 214.56724 * 7 6 4 35 35 H 1.08993 * 109.47858 * 334.57209 * 7 6 4 36 36 H 1.09003 * 109.47365 * 210.00341 * 8 6 4 37 37 H 1.09010 * 109.47376 * 329.99458 * 8 6 4 38 38 H 0.97009 * 120.00073 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.50903 * 57.67526 * 18 17 2 40 40 H 1.08996 * 109.50908 * 297.53648 * 18 17 2 41 41 H 1.09005 * 109.50630 * 176.78755 * 19 18 17 42 42 H 1.09000 * 109.50890 * 296.91435 * 19 18 17 43 43 H 1.08994 * 109.47758 * 185.21247 * 23 21 20 44 44 H 1.09003 * 109.46772 * 305.21206 * 23 21 20 45 45 H 1.09001 * 109.46761 * 300.00185 * 25 24 23 46 46 H 1.09000 * 109.46882 * 60.00210 * 25 24 23 47 47 H 1.09000 * 115.55077 * 29.33047 * 26 25 24 48 48 H 1.09004 * 117.50165 * 0.02562 * 27 26 25 49 49 H 1.09002 * 117.49747 * 145.02070 * 27 26 25 50 50 H 1.09001 * 117.49882 * 252.51344 * 28 27 26 51 51 H 1.09001 * 117.51957 * 107.48279 * 28 27 26 52 52 H 1.09000 * 109.51150 * 302.32866 * 29 17 2 53 53 H 1.09002 * 109.50733 * 62.46422 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.5542 -1.8007 -1.1304 6 7 1.9018 -0.1344 -2.4418 7 6 1.3717 1.2268 -2.5521 8 6 2.2898 -0.8695 -3.6481 9 6 1.1055 -1.6431 -4.1677 10 1 0.1583 -1.5920 -3.6513 11 6 1.2309 -2.4153 -5.3030 12 7 2.3840 -2.4772 -5.9322 13 14 -0.2374 -3.3737 -5.9475 14 1 -1.3384 -2.4323 -6.2738 15 1 0.1560 -4.1189 -7.1703 16 1 -0.6967 -4.3323 -4.9105 17 7 2.0196 -0.6925 1.1996 18 6 1.5278 -2.0771 1.2462 19 6 2.1085 -2.7780 2.4772 20 8 1.7577 -2.0390 3.6503 21 6 2.2214 -0.6862 3.6386 22 1 3.3101 -0.6751 3.5848 23 6 1.7651 0.0213 4.9161 24 8 2.3989 -0.5809 6.0465 25 6 2.0385 0.0086 7.2975 26 6 2.7726 -0.7110 8.4307 27 6 1.9231 -1.4615 9.4581 28 6 2.6106 -0.1507 9.8451 29 6 1.6418 0.0359 2.4194 30 1 -0.3634 -1.0171 0.1462 31 1 -0.3633 0.6353 0.8078 32 1 -0.3633 0.3820 -0.9540 33 1 2.1980 1.9370 -2.5846 34 1 0.7816 1.3141 -3.4645 35 1 0.7411 1.4423 -1.6896 36 1 2.6268 -0.1661 -4.4095 37 1 3.0982 -1.5603 -3.4084 38 1 2.4723 -3.0208 -6.7308 39 1 1.8407 -2.6050 0.3454 40 1 0.4396 -2.0749 1.3082 41 1 1.7018 -3.7869 2.5473 42 1 3.1939 -2.8277 2.3895 43 1 2.0383 1.0753 4.8652 44 1 0.6834 -0.0692 5.0150 45 1 2.3171 1.0624 7.2961 46 1 0.9625 -0.0826 7.4455 47 1 3.7394 -1.1398 8.1668 48 1 0.8412 -1.4430 9.3266 49 1 2.3308 -2.3846 9.8704 50 1 3.4707 -0.2113 10.5120 51 1 1.9814 0.7308 9.9683 52 1 2.0379 1.0505 2.3750 53 1 0.5554 0.0718 2.5002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362587566.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:36 Heat of formation + Delta-G solvation = -98.873391 kcal Electronic energy + Delta-G solvation = -30602.139962 eV Core-core repulsion = 26474.890232 eV Total energy + Delta-G solvation = -4127.249731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.58443 -40.19696 -39.19644 -37.51744 -36.98237 -36.54039 -34.76384 -33.15213 -32.12894 -29.67920 -29.05116 -27.80426 -27.37949 -26.23923 -25.46761 -24.26671 -23.25777 -23.07157 -21.64858 -21.10006 -19.93005 -18.67449 -18.22943 -17.75001 -17.58627 -17.41913 -16.90741 -16.75160 -16.36631 -16.23017 -16.03024 -15.84421 -15.70024 -15.30062 -15.12635 -14.68680 -14.64681 -14.13062 -14.03841 -13.78092 -13.59904 -13.49822 -13.45072 -13.22336 -13.03236 -12.88097 -12.72773 -12.58192 -12.41816 -12.39041 -12.29172 -12.12949 -12.05223 -11.90195 -11.70455 -11.53166 -11.32036 -11.15629 -10.79542 -10.64544 -10.42633 -10.17967 -9.41036 -9.29399 -8.22293 -6.37499 1.35803 1.39819 1.47052 1.81805 2.13805 2.37567 2.51510 2.71626 2.88809 3.03337 3.07054 3.60879 3.77664 3.92087 3.93447 3.98245 4.00802 4.06627 4.07586 4.15873 4.19997 4.28968 4.35156 4.37179 4.39907 4.47914 4.55002 4.58041 4.61135 4.64961 4.70539 4.72634 4.74656 4.77922 4.87662 4.91400 4.95499 5.01185 5.01636 5.09122 5.20428 5.23355 5.24755 5.25580 5.57074 5.81107 5.87704 5.98467 6.06038 6.16371 6.31837 6.70277 6.80809 7.28624 7.51175 8.84283 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.001979 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.922082 B =14148.397226 C =14562.770847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 H 0.134 0.866 4 C 0.503 3.497 5 O -0.578 6.578 6 N -0.608 5.608 7 C 0.070 3.930 8 C 0.260 3.740 9 C -0.542 4.542 10 H 0.055 0.945 11 C 0.007 3.993 12 N -0.928 5.928 13 Si 0.966 3.034 14 H -0.260 1.260 15 H -0.280 1.280 16 H -0.278 1.278 17 N -0.529 5.529 18 C 0.001 3.999 19 C 0.074 3.926 20 O -0.390 6.390 21 C 0.092 3.908 22 H 0.059 0.941 23 C 0.076 3.924 24 O -0.405 6.405 25 C 0.091 3.909 26 C -0.174 4.174 27 C -0.183 4.183 28 C -0.159 4.159 29 C 0.029 3.971 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.021 0.979 37 H -0.003 1.003 38 H 0.267 0.733 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.106 0.894 42 H 0.047 0.953 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.096 0.904 50 H 0.106 0.894 51 H 0.108 0.892 52 H 0.115 0.885 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.029 12.268 27.173 30.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.034 4.034 3 H 0.152 0.848 4 C 0.291 3.709 5 O -0.459 6.459 6 N -0.339 5.339 7 C -0.072 4.072 8 C 0.139 3.861 9 C -0.580 4.580 10 H 0.073 0.927 11 C -0.192 4.192 12 N -0.567 5.567 13 Si 0.791 3.209 14 H -0.184 1.184 15 H -0.205 1.205 16 H -0.203 1.203 17 N -0.253 5.253 18 C -0.127 4.127 19 C -0.003 4.003 20 O -0.309 6.309 21 C 0.034 3.966 22 H 0.078 0.922 23 C 0.000 4.000 24 O -0.325 6.325 25 C 0.016 3.984 26 C -0.192 4.192 27 C -0.220 4.220 28 C -0.195 4.195 29 C -0.099 4.099 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.039 0.961 37 H 0.015 0.985 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.124 0.876 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.117 0.883 48 H 0.117 0.883 49 H 0.115 0.885 50 H 0.124 0.876 51 H 0.126 0.874 52 H 0.133 0.867 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.123 11.413 27.159 29.747 hybrid contribution -1.045 -0.796 -1.232 1.801 sum -5.168 10.617 25.927 28.489 Atomic orbital electron populations 1.22459 0.93672 1.03009 1.04752 1.21634 0.95329 0.99098 0.87385 0.84846 1.21087 0.78710 0.85852 0.85239 1.90497 1.45808 1.23471 1.86110 1.48101 1.62756 1.16794 1.06288 1.22112 0.99739 0.81175 1.04190 1.18722 0.94796 0.90977 0.81611 1.21660 0.97246 1.28773 1.10342 0.92696 1.25859 0.99029 0.97416 0.96862 1.70051 1.25855 1.41105 1.19710 0.85489 0.79264 0.78705 0.77483 1.18401 1.20489 1.20348 1.62064 1.59699 1.02161 1.01424 1.23165 0.97683 0.90636 1.01207 1.22584 0.99224 0.95368 0.83150 1.87987 1.78476 1.23979 1.40430 1.22205 0.98525 0.82239 0.93605 0.92249 1.22488 0.97397 0.96566 0.83566 1.87912 1.69380 1.60365 1.14816 1.22123 0.97927 0.96387 0.82011 1.22164 1.01325 1.05366 0.90326 1.23147 0.99288 0.96671 1.02936 1.23064 1.03521 0.97651 0.95307 1.22773 1.00017 0.98987 0.88081 0.93411 0.88120 0.90362 0.91328 0.91548 0.88083 0.96053 0.98472 0.92452 0.88806 0.94065 0.87581 0.93490 0.88767 0.91858 0.91396 0.92562 0.88287 0.88309 0.88528 0.87573 0.87362 0.86719 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.19 8.02 71.98 0.58 -3.61 16 2 C 0.08 2.14 1.92 44.17 0.08 2.23 16 3 H 0.13 2.84 7.42 -2.39 -0.02 2.82 16 4 C 0.50 20.67 6.80 87.66 0.60 21.26 16 5 O -0.58 -29.61 13.05 -3.03 -0.04 -29.65 16 6 N -0.61 -25.39 2.86 -851.14 -2.43 -27.83 16 7 C 0.07 1.99 9.80 127.77 1.25 3.25 16 8 C 0.26 14.07 5.22 85.63 0.45 14.52 16 9 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 10 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 11 C 0.01 0.43 5.46 84.66 0.46 0.89 16 12 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 13 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 14 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 N -0.53 -15.14 4.59 -874.37 -4.01 -19.15 16 18 C 0.00 0.02 4.80 86.31 0.41 0.44 16 19 C 0.07 2.16 7.01 72.01 0.50 2.67 16 20 O -0.39 -11.06 10.44 -144.67 -1.51 -12.57 16 21 C 0.09 2.09 3.09 30.62 0.09 2.19 16 22 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 23 C 0.08 1.31 5.60 71.98 0.40 1.72 16 24 O -0.40 -8.77 10.31 -144.67 -1.49 -10.26 16 25 C 0.09 1.38 6.22 71.98 0.45 1.83 16 26 C -0.17 -2.62 6.06 -10.80 -0.07 -2.68 16 27 C -0.18 -2.34 10.18 30.59 0.31 -2.03 16 28 C -0.16 -1.61 10.25 30.59 0.31 -1.30 16 29 C 0.03 0.58 4.59 86.32 0.40 0.98 16 30 H 0.05 1.32 6.02 -2.39 -0.01 1.31 16 31 H 0.10 1.60 6.99 -2.39 -0.02 1.58 16 32 H 0.08 1.81 6.00 -2.39 -0.01 1.80 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 34 H 0.07 2.00 8.11 -2.38 -0.02 1.98 16 35 H 0.10 2.10 4.44 -2.39 -0.01 2.09 16 36 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 37 H 0.00 -0.18 7.36 -2.38 -0.02 -0.20 16 38 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 39 H 0.09 3.88 5.02 -2.39 -0.01 3.87 16 40 H 0.04 1.27 6.25 -2.39 -0.01 1.26 16 41 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.06 0.75 7.88 -2.39 -0.02 0.73 16 47 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.10 1.16 8.03 -2.38 -0.02 1.14 16 49 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.11 1.63 8.13 -2.39 -0.02 1.61 16 53 H 0.06 1.06 6.74 -2.39 -0.02 1.05 16 Total: -1.00 -77.40 411.94 0.19 -77.21 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.88 Total: 19.87 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 6.48 Total: 11.63 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -6.16 Total: -102.98 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -3.04 Total: -52.47 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -77.40 0.19 -77.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362587566.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.666 kcal (2) G-P(sol) polarization free energy of solvation -77.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds