Wall clock time and date at job start Sat Apr 11 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47193 * 2 1 4 4 C 1.50704 * 109.47027 * 240.00241 * 2 1 3 5 5 O 1.21282 * 119.99730 * 269.43166 * 4 2 1 6 6 N 1.34772 * 119.99787 * 89.43078 * 4 2 1 7 7 C 1.46502 * 120.00216 * 5.06239 * 6 4 2 8 8 C 1.46506 * 119.99938 * 185.06590 * 6 4 2 9 9 C 1.50697 * 109.46931 * 270.00253 * 8 6 4 10 10 H 1.07995 * 120.00242 * 359.97438 * 9 8 6 11 11 C 1.37880 * 120.00089 * 179.97438 * 9 8 6 12 12 N 1.31514 * 119.99706 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00175 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47295 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47507 * 119.99829 * 13 11 9 16 16 H 1.48504 * 109.46855 * 239.99851 * 13 11 9 17 17 N 1.46897 * 109.46946 * 120.00464 * 2 1 3 18 18 C 1.47008 * 111.00166 * 176.35377 * 17 2 1 19 19 C 1.53097 * 109.26022 * 182.39210 * 18 17 2 20 20 O 1.43008 * 109.25909 * 303.14716 * 19 18 17 21 21 C 1.43017 * 113.73687 * 58.66977 * 20 19 18 22 22 H 1.09006 * 109.50560 * 61.26374 * 21 20 19 23 23 C 1.53004 * 109.50978 * 181.39100 * 21 20 19 24 24 O 1.42894 * 109.47279 * 294.78866 * 23 21 20 25 25 C 1.42900 * 114.00018 * 179.97438 * 24 23 21 26 26 C 1.52996 * 109.47058 * 179.97438 * 25 24 23 27 27 C 1.52999 * 117.49953 * 243.61721 * 26 25 24 28 28 C 1.52994 * 60.00521 * 252.51349 * 27 26 25 29 29 C 1.47016 * 111.00127 * 299.98912 * 17 2 1 30 30 H 1.09007 * 109.47451 * 57.28116 * 1 2 3 31 31 H 1.08994 * 109.47597 * 177.28188 * 1 2 3 32 32 H 1.09004 * 109.47205 * 297.28526 * 1 2 3 33 33 H 1.09003 * 109.46424 * 84.70977 * 7 6 4 34 34 H 1.08998 * 109.47256 * 324.70873 * 7 6 4 35 35 H 1.08998 * 109.47264 * 204.70243 * 7 6 4 36 36 H 1.09003 * 109.46776 * 29.99961 * 8 6 4 37 37 H 1.08997 * 109.47079 * 150.00067 * 8 6 4 38 38 H 0.97004 * 119.99944 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.50704 * 302.32396 * 18 17 2 40 40 H 1.08999 * 109.51060 * 62.45518 * 18 17 2 41 41 H 1.09008 * 109.50686 * 183.21465 * 19 18 17 42 42 H 1.08999 * 109.50710 * 63.08543 * 19 18 17 43 43 H 1.08997 * 109.46332 * 54.78448 * 23 21 20 44 44 H 1.08995 * 109.46871 * 174.78309 * 23 21 20 45 45 H 1.08999 * 109.46674 * 299.99813 * 25 24 23 46 46 H 1.08994 * 109.47203 * 59.99716 * 25 24 23 47 47 H 1.08997 * 115.55341 * 29.32495 * 26 25 24 48 48 H 1.09009 * 117.49999 * 0.02562 * 27 26 25 49 49 H 1.09001 * 117.50079 * 145.01883 * 27 26 25 50 50 H 1.09002 * 117.50021 * 252.51607 * 28 27 26 51 51 H 1.08997 * 117.50306 * 107.48306 * 28 27 26 52 52 H 1.09001 * 109.50676 * 297.54251 * 29 17 2 53 53 H 1.09001 * 109.50894 * 57.66847 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2442 -1.9041 -1.1975 6 7 2.2460 -0.0191 -2.3676 7 6 2.0969 1.4382 -2.3779 8 6 2.6272 -0.7252 -3.5934 9 6 4.1290 -0.8247 -3.6693 10 1 4.7385 -0.4038 -2.8834 11 6 4.7249 -1.4531 -4.7421 12 7 3.9827 -1.9661 -5.6989 13 14 6.5864 -1.5771 -4.8359 14 1 7.1866 -0.9263 -3.6437 15 1 6.9860 -3.0068 -4.8736 16 1 7.0665 -0.8963 -6.0653 17 7 2.0196 -0.6926 1.1994 18 6 3.4865 -0.7883 1.1906 19 6 3.9492 -1.5671 2.4247 20 8 3.4559 -0.9220 3.6019 21 6 2.0306 -0.8123 3.6438 22 1 1.5884 -1.8086 3.6331 23 6 1.6118 -0.0803 4.9205 24 8 1.9590 -0.8712 6.0588 25 6 1.6096 -0.2747 7.3095 26 6 2.0251 -1.2042 8.4515 27 6 0.9152 -1.7786 9.3341 28 6 1.8423 -0.6916 9.8816 29 6 1.5484 -0.0259 2.4220 30 1 -0.3634 0.5555 -0.8646 31 1 -0.3634 -1.0264 -0.0487 32 1 -0.3634 0.4711 0.9133 33 1 3.0246 1.9006 -2.0405 34 1 1.2842 1.7251 -1.7106 35 1 1.8713 1.7733 -3.3903 36 1 2.1967 -1.7265 -3.5847 37 1 2.2552 -0.1771 -4.4590 38 1 4.4019 -2.4086 -6.4536 39 1 3.8120 -1.3078 0.2893 40 1 3.9168 0.2130 1.2097 41 1 5.0387 -1.5915 2.4525 42 1 3.5628 -2.5853 2.3786 43 1 2.1260 0.8793 4.9743 44 1 0.5345 0.0850 4.9077 45 1 2.1241 0.6807 7.4126 46 1 0.5324 -0.1131 7.3466 47 1 2.8881 -1.8389 8.2508 48 1 -0.1111 -1.4947 9.1009 49 1 1.0479 -2.7916 9.7141 50 1 2.5850 -0.9894 10.6217 51 1 1.4262 0.3077 10.0086 52 1 1.9476 0.9876 2.4609 53 1 0.4590 0.0112 2.4197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362587569.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:40 Heat of formation + Delta-G solvation = -107.338641 kcal Electronic energy + Delta-G solvation = -30604.020812 eV Core-core repulsion = 26476.404001 eV Total energy + Delta-G solvation = -4127.616811 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.47946 -40.22867 -39.19918 -37.48667 -36.95935 -36.48658 -34.75356 -33.20559 -32.47179 -29.84612 -28.91444 -27.78056 -27.41255 -26.60355 -25.26231 -23.82168 -23.24938 -23.03173 -21.74624 -21.31434 -19.85199 -18.73635 -18.26581 -17.89054 -17.74000 -17.57054 -16.93055 -16.65990 -16.37067 -16.32072 -16.17528 -15.60044 -15.50215 -15.26723 -15.06890 -14.97909 -14.53300 -14.33535 -13.97203 -13.70252 -13.53433 -13.47962 -13.45980 -13.17944 -12.98001 -12.82880 -12.81454 -12.63132 -12.50770 -12.38059 -12.34619 -12.23103 -12.20619 -11.94844 -11.70297 -11.55171 -11.30207 -11.17320 -10.74768 -10.66440 -10.43091 -10.42044 -9.45877 -9.38170 -8.24198 -6.38414 1.33549 1.36234 1.47473 1.75556 2.16287 2.35014 2.49749 2.66255 2.82276 2.98914 3.05170 3.57098 3.77029 3.85727 3.93990 3.98220 4.00763 4.02380 4.05467 4.10513 4.18628 4.28635 4.35615 4.36290 4.38012 4.46931 4.49618 4.52094 4.58454 4.64611 4.68679 4.73538 4.76057 4.78416 4.81864 4.89034 4.89393 4.96457 5.01023 5.02100 5.19463 5.24068 5.24308 5.25404 5.54619 5.73242 5.82724 5.92770 6.04675 6.11372 6.31024 6.68571 6.77708 7.27231 7.48964 8.82778 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.002116 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.846581 B =13229.663548 C =14104.803262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.075 3.925 3 H 0.082 0.918 4 C 0.501 3.499 5 O -0.577 6.577 6 N -0.611 5.611 7 C 0.079 3.921 8 C 0.261 3.739 9 C -0.539 4.539 10 H 0.049 0.951 11 C 0.008 3.992 12 N -0.927 5.927 13 Si 0.965 3.035 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.268 1.268 17 N -0.531 5.531 18 C 0.020 3.980 19 C 0.075 3.925 20 O -0.386 6.386 21 C 0.092 3.908 22 H 0.060 0.940 23 C 0.077 3.923 24 O -0.405 6.405 25 C 0.092 3.908 26 C -0.175 4.175 27 C -0.178 4.178 28 C -0.162 4.162 29 C 0.030 3.970 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.075 0.925 36 H -0.004 1.004 37 H 0.026 0.974 38 H 0.267 0.733 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.110 0.890 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.103 0.897 49 H 0.097 0.903 50 H 0.104 0.896 51 H 0.108 0.892 52 H 0.058 0.942 53 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 11.086 26.943 30.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.036 4.036 3 H 0.100 0.900 4 C 0.289 3.711 5 O -0.456 6.456 6 N -0.343 5.343 7 C -0.064 4.064 8 C 0.140 3.860 9 C -0.577 4.577 10 H 0.067 0.933 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.790 3.210 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.193 1.193 17 N -0.258 5.258 18 C -0.109 4.109 19 C -0.002 4.002 20 O -0.306 6.306 21 C 0.034 3.966 22 H 0.078 0.922 23 C 0.000 4.000 24 O -0.325 6.325 25 C 0.016 3.984 26 C -0.193 4.193 27 C -0.215 4.215 28 C -0.199 4.199 29 C -0.097 4.097 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.014 0.986 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.128 0.872 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.113 0.887 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.114 0.886 48 H 0.122 0.878 49 H 0.115 0.885 50 H 0.122 0.878 51 H 0.126 0.874 52 H 0.076 0.924 53 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.085 9.814 26.894 30.036 hybrid contribution 1.343 0.164 -1.117 1.755 sum -7.742 9.979 25.777 28.704 Atomic orbital electron populations 1.21815 0.89647 1.03105 1.04647 1.21690 0.98922 0.95875 0.87118 0.90036 1.21060 0.77575 0.87400 0.85082 1.90644 1.52926 1.17688 1.84352 1.48198 1.66861 1.08838 1.10441 1.21950 1.01971 0.78369 1.04063 1.18770 0.94315 0.91368 0.81550 1.21681 0.92805 1.37066 1.06174 0.93283 1.25832 1.03511 0.94646 0.95147 1.70049 1.37238 1.38365 1.11037 0.85403 0.79330 0.77894 0.78403 1.19306 1.20762 1.19305 1.61846 1.09715 1.52659 1.01544 1.22729 0.88252 0.99935 0.99945 1.22542 0.99840 0.95051 0.82751 1.87996 1.21554 1.79988 1.41013 1.22232 0.81451 0.99370 0.93582 0.92169 1.22484 1.00545 0.93712 0.83257 1.87912 1.83681 1.46546 1.14331 1.22115 0.99324 0.95081 0.81884 1.22154 1.01976 1.03684 0.91533 1.23160 0.95955 0.99122 1.03270 1.23066 1.02830 0.99694 0.94333 1.22820 1.02980 0.96189 0.87739 0.90196 0.93033 0.87872 0.92804 0.88468 0.90594 0.98576 0.95594 0.92412 0.92071 0.93734 0.87208 0.93293 0.91665 0.88727 0.92222 0.91666 0.88610 0.87839 0.88500 0.87805 0.87369 0.92356 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.92 71.98 0.64 -2.27 16 2 C 0.08 2.16 1.65 44.17 0.07 2.23 16 3 H 0.08 1.95 6.54 -2.39 -0.02 1.94 16 4 C 0.50 21.04 5.72 87.66 0.50 21.54 16 5 O -0.58 -30.65 15.03 -3.04 -0.05 -30.70 16 6 N -0.61 -25.98 2.86 -851.12 -2.43 -28.41 16 7 C 0.08 2.31 9.85 127.77 1.26 3.57 16 8 C 0.26 14.21 5.16 85.63 0.44 14.65 16 9 C -0.54 -31.48 9.39 25.60 0.24 -31.24 16 10 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 11 C 0.01 0.44 5.46 84.66 0.46 0.90 16 12 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 13 Si 0.97 45.64 29.54 68.60 2.03 47.67 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 15 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 N -0.53 -15.59 4.34 -874.40 -3.80 -19.39 16 18 C 0.02 0.64 5.26 86.31 0.45 1.10 16 19 C 0.08 2.21 7.01 72.01 0.50 2.72 16 20 O -0.39 -10.90 10.44 -144.68 -1.51 -12.41 16 21 C 0.09 2.08 3.09 30.63 0.09 2.18 16 22 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 23 C 0.08 1.30 5.60 71.98 0.40 1.70 16 24 O -0.40 -8.72 10.31 -144.68 -1.49 -10.21 16 25 C 0.09 1.38 6.22 71.98 0.45 1.83 16 26 C -0.18 -2.65 6.06 -10.79 -0.07 -2.71 16 27 C -0.18 -2.10 10.18 30.59 0.31 -1.79 16 28 C -0.16 -1.67 10.25 30.59 0.31 -1.36 16 29 C 0.03 0.61 4.62 86.31 0.40 1.01 16 30 H 0.08 1.53 7.49 -2.38 -0.02 1.51 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 1.42 6.21 -2.39 -0.01 1.41 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.10 2.00 5.89 -2.39 -0.01 1.99 16 35 H 0.08 2.17 7.83 -2.39 -0.02 2.15 16 36 H 0.00 -0.24 7.50 -2.39 -0.02 -0.26 16 37 H 0.03 1.42 7.86 -2.39 -0.02 1.40 16 38 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.06 2.54 6.11 -2.39 -0.01 2.53 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 2.88 8.14 -2.38 -0.02 2.86 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.07 0.74 7.87 -2.39 -0.02 0.72 16 47 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.10 1.03 8.03 -2.38 -0.02 1.01 16 49 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 53 H 0.12 1.73 6.13 -2.39 -0.01 1.71 16 Total: -1.00 -79.61 419.13 0.39 -79.22 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.87 Total: 16.39 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 6.48 Total: 14.06 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -5.94 Total: -104.02 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -3.05 Total: -53.31 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -79.61 0.39 -79.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362587569.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.114 kcal (2) G-P(sol) polarization free energy of solvation -79.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds