Wall clock time and date at job start Sat Apr 11 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46501 * 120.00201 * 269.99947 * 3 2 1 5 5 C 1.50700 * 109.47086 * 269.99906 * 4 3 2 6 6 H 1.07994 * 119.99869 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99840 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00097 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99781 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47115 * 60.00442 * 9 7 5 11 11 H 1.48503 * 109.47163 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47280 * 300.00326 * 9 7 5 13 13 C 1.34779 * 120.00162 * 89.99533 * 3 2 1 14 14 O 1.21281 * 120.00200 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99888 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47270 * 186.25713 * 15 13 3 17 17 C 1.47017 * 111.00483 * 189.91387 * 16 15 13 18 18 C 1.53087 * 109.37042 * 177.19489 * 17 16 15 19 19 H 1.09002 * 109.51084 * 297.40695 * 18 17 16 20 20 C 1.52995 * 109.51489 * 177.30414 * 18 17 16 21 21 O 1.43142 * 109.21836 * 57.32718 * 18 17 16 22 22 C 1.42316 * 113.77880 * 302.42353 * 21 18 17 23 23 C 1.54306 * 110.11886 * 295.07777 * 22 21 18 24 24 C 1.55112 * 101.99455 * 261.74896 * 23 22 21 25 25 O 1.44436 * 103.54776 * 323.36207 * 24 23 22 26 26 C 1.43887 * 106.99851 * 39.74447 * 25 24 23 27 27 H 1.08999 * 109.90488 * 214.25414 * 26 25 24 28 28 C 1.53000 * 109.90825 * 93.18303 * 26 25 24 29 29 C 1.47130 * 110.99919 * 66.34765 * 16 15 13 30 30 H 1.09008 * 109.46651 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47358 * 299.99661 * 1 2 3 32 32 H 1.08996 * 109.47018 * 60.00509 * 1 2 3 33 33 H 1.08990 * 109.47335 * 240.00119 * 2 1 3 34 34 H 1.08996 * 109.47018 * 119.99491 * 2 1 3 35 35 H 1.09008 * 109.46819 * 30.00224 * 4 3 2 36 36 H 1.09003 * 109.47224 * 149.99550 * 4 3 2 37 37 H 0.96993 * 119.99926 * 179.97438 * 8 7 5 38 38 H 1.08996 * 109.47665 * 66.25748 * 15 13 3 39 39 H 1.09003 * 109.47063 * 306.25712 * 15 13 3 40 40 H 1.09004 * 109.48428 * 297.16216 * 17 16 15 41 41 H 1.08996 * 109.48842 * 57.21859 * 17 16 15 42 42 H 1.09000 * 109.47474 * 59.99444 * 20 18 17 43 43 H 1.08996 * 109.47560 * 180.02562 * 20 18 17 44 44 H 1.09003 * 109.47077 * 299.99900 * 20 18 17 45 45 H 1.08997 * 110.93637 * 143.55779 * 23 22 21 46 46 H 1.08998 * 110.93198 * 19.92510 * 23 22 21 47 47 H 1.08991 * 110.60931 * 81.88008 * 24 23 22 48 48 H 1.08997 * 110.60458 * 204.85085 * 24 23 22 49 49 H 1.08999 * 109.47154 * 61.45386 * 28 26 25 50 50 H 1.09003 * 109.47024 * 181.44973 * 28 26 25 51 51 H 1.09001 * 109.46740 * 301.44871 * 28 26 25 52 52 H 1.09003 * 109.50051 * 61.38749 * 29 16 15 53 53 H 1.08996 * 109.54109 * 301.29399 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1491 2.3898 -2.8779 8 7 3.3491 3.1259 -3.6180 9 14 5.9131 2.0958 -3.4174 10 1 6.1402 0.6390 -3.5948 11 1 6.1607 2.7959 -4.7034 12 1 6.8410 2.6190 -2.3828 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3061 2.4723 16 7 2.1654 2.2497 3.5847 17 6 2.1616 1.5478 4.8765 18 6 2.4140 2.5543 6.0020 19 1 3.4007 3.0003 5.8770 20 6 2.3440 1.8389 7.3526 21 8 1.4160 3.5791 5.9503 22 6 1.3647 4.2678 4.7060 23 6 2.6763 5.0476 4.4764 24 6 2.2828 6.4794 4.9245 25 8 0.9143 6.6087 4.4807 26 6 0.2704 5.3463 4.7297 27 1 -0.4658 5.1454 3.9514 28 6 -0.4126 5.3709 6.0986 29 6 1.1289 3.2935 3.5570 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 1.5816 1.6877 -2.0284 36 1 2.0954 3.1411 -1.1384 37 1 3.6751 3.5164 -4.4439 38 1 2.6994 0.4837 2.5800 39 1 0.9750 0.9143 2.4832 40 1 1.1940 1.0689 5.0272 41 1 2.9466 0.7917 4.8819 42 1 3.1017 1.0562 7.3890 43 1 2.5234 2.5562 8.1535 44 1 1.3565 1.3947 7.4777 45 1 2.9591 5.0328 3.4239 46 1 3.4787 4.6516 5.0988 47 1 2.3449 6.5728 6.0086 48 1 2.9156 7.2213 4.4375 49 1 -1.1768 6.1481 6.1095 50 1 -0.8760 4.4031 6.2908 51 1 0.3283 5.5788 6.8705 52 1 0.1465 2.8338 3.6655 53 1 1.1769 3.8299 2.6094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364060563.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:07 Heat of formation + Delta-G solvation = -111.202365 kcal Electronic energy + Delta-G solvation = -32465.083754 eV Core-core repulsion = 28337.299399 eV Total energy + Delta-G solvation = -4127.784355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.96911 -39.18593 -38.08145 -35.74840 -35.04144 -33.30970 -32.79551 -31.27750 -30.64795 -30.11767 -28.79500 -27.68524 -26.61077 -24.98710 -23.31892 -23.01233 -22.65866 -21.90239 -21.02556 -19.50758 -18.30734 -17.04387 -16.84676 -16.53754 -16.36251 -16.17758 -15.64717 -15.35773 -14.88038 -14.51747 -14.45429 -14.37815 -13.96860 -13.80229 -13.56570 -13.39172 -13.16749 -13.01730 -12.77019 -12.64066 -12.44245 -12.36136 -12.01320 -11.96825 -11.85196 -11.77472 -11.65285 -11.52227 -11.20948 -11.17082 -10.97097 -10.91191 -10.84250 -10.74257 -10.53924 -10.30477 -10.12218 -9.70309 -9.64398 -9.60709 -8.87795 -8.42486 -8.27771 -7.64943 -6.03485 -4.08169 3.31981 3.36734 3.37286 3.41132 3.43913 3.49418 3.86559 4.07853 4.43697 4.47931 4.68124 4.69494 4.78387 4.89776 5.03763 5.06591 5.13043 5.20782 5.22892 5.26704 5.29903 5.31021 5.34040 5.38543 5.43615 5.46326 5.55852 5.57788 5.60916 5.64124 5.73435 5.73768 5.82245 5.84771 5.95953 5.98362 6.00334 6.04130 6.19784 6.22688 6.29709 6.43549 6.76632 6.80590 6.92927 7.11216 7.21194 7.44871 7.55727 7.93022 8.24398 8.42896 8.91317 9.12078 9.56964 11.04529 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012822 B = 0.003266 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.138397 B = 8572.314010 C = 9241.618279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.249 3.751 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.522 6.522 15 C 0.037 3.963 16 N -0.514 5.514 17 C 0.024 3.976 18 C 0.087 3.913 19 H 0.071 0.929 20 C -0.142 4.142 21 O -0.363 6.363 22 C 0.099 3.901 23 C -0.166 4.166 24 C 0.047 3.953 25 O -0.368 6.368 26 C 0.089 3.911 27 H 0.100 0.900 28 C -0.153 4.153 29 C 0.036 3.964 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.061 0.939 52 H 0.035 0.965 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.490 -4.043 20.670 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.130 3.870 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.398 6.398 15 C -0.094 4.094 16 N -0.238 5.238 17 C -0.104 4.104 18 C 0.029 3.971 19 H 0.089 0.911 20 C -0.199 4.199 21 O -0.283 6.283 22 C 0.059 3.941 23 C -0.204 4.204 24 C -0.029 4.029 25 O -0.287 6.287 26 C 0.030 3.970 27 H 0.117 0.883 28 C -0.211 4.211 29 C -0.092 4.092 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.121 0.879 46 H 0.101 0.899 47 H 0.076 0.924 48 H 0.111 0.889 49 H 0.076 0.924 50 H 0.086 0.914 51 H 0.080 0.920 52 H 0.053 0.947 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.040 -2.862 20.470 21.533 hybrid contribution 0.506 -1.083 -0.511 1.300 sum -5.534 -3.945 19.959 21.084 Atomic orbital electron populations 1.22225 0.96910 1.01361 1.02214 1.21390 0.93392 0.84395 1.02567 1.48272 1.64016 1.13197 1.07716 1.19237 0.96186 0.93578 0.78021 1.21390 0.96941 1.31935 1.06213 0.92576 1.24925 0.97784 0.94930 0.96399 1.69919 1.35710 1.33396 1.14369 0.86572 0.84899 0.78196 0.77827 1.20304 1.21192 1.20184 1.20078 0.78991 0.87178 0.84625 1.90650 1.44568 1.17766 1.86772 1.22116 1.01214 0.95282 0.90813 1.61839 1.48123 1.12660 1.01176 1.22834 1.01247 0.96792 0.89566 1.22197 0.92536 0.87856 0.94512 0.91147 1.21726 1.02689 1.00209 0.95303 1.87895 1.57029 1.49783 1.33588 1.22319 0.95677 0.92164 0.83958 1.23580 0.97365 0.94642 1.04826 1.23582 0.83190 0.97420 0.98748 1.88968 1.23637 1.32154 1.83952 1.22624 0.93484 0.82415 0.98453 0.88252 1.21937 1.00590 1.01996 0.96542 1.22779 0.92053 0.93829 1.00524 0.92197 0.93349 0.91944 0.89888 0.92012 0.95150 0.93940 0.92681 0.88312 0.92600 0.94113 0.89660 0.90932 0.91624 0.91945 0.87949 0.89872 0.92432 0.88887 0.92429 0.91391 0.91970 0.94679 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.18 37.16 0.38 -1.82 16 2 C 0.11 1.66 5.85 -4.04 -0.02 1.63 16 3 N -0.60 -12.30 2.46 -175.06 -0.43 -12.73 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 5 C -0.53 -14.82 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.51 10.18 7.25 -10.99 -0.08 10.10 16 14 O -0.52 -12.67 14.25 5.56 0.08 -12.60 16 15 C 0.04 0.54 3.91 -4.98 -0.02 0.52 16 16 N -0.51 -7.38 4.21 -236.06 -0.99 -8.37 16 17 C 0.02 0.26 4.91 -3.72 -0.02 0.25 16 18 C 0.09 0.91 3.14 -26.69 -0.08 0.83 16 19 H 0.07 0.79 6.39 -51.93 -0.33 0.46 16 20 C -0.14 -1.10 9.57 37.16 0.36 -0.74 16 21 O -0.36 -4.39 8.14 -35.23 -0.29 -4.67 16 22 C 0.10 1.31 0.96 -89.86 -0.09 1.22 16 23 C -0.17 -2.28 5.97 -24.93 -0.15 -2.43 16 24 C 0.05 0.59 7.68 38.27 0.29 0.88 16 25 O -0.37 -5.35 11.20 -35.23 -0.39 -5.74 16 26 C 0.09 1.14 3.75 -26.39 -0.10 1.05 16 27 H 0.10 1.25 7.68 -51.93 -0.40 0.85 16 28 C -0.15 -1.68 8.57 37.16 0.32 -1.36 16 29 C 0.04 0.53 3.65 -3.96 -0.01 0.51 16 30 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.05 0.60 7.12 -51.93 -0.37 0.23 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.06 0.79 6.61 -51.93 -0.34 0.44 16 35 H 0.03 0.80 8.07 -51.92 -0.42 0.38 16 36 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.10 1.30 7.61 -51.93 -0.40 0.90 16 39 H 0.06 0.72 6.83 -51.93 -0.35 0.37 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.10 1.71 7.78 -51.93 -0.40 1.31 16 46 H 0.08 1.06 6.20 -51.93 -0.32 0.74 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 51 H 0.06 0.70 7.88 -51.93 -0.41 0.29 16 52 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 53 H 0.11 1.95 6.03 -51.93 -0.31 1.63 16 LS Contribution 407.05 15.07 6.13 6.13 Total: -1.00 -32.81 407.05 -9.32 -42.13 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -9.47 Total: 1.28 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 0.33 Total: 3.55 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.69 Total: -46.95 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.60 Total: -23.01 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.81 -9.32 -42.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364060563.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.069 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds