Wall clock time and date at job start Sat Apr 11 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46501 * 120.00201 * 269.99947 * 3 2 1 5 5 C 1.50700 * 109.47086 * 269.99906 * 4 3 2 6 6 H 1.07994 * 119.99869 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99840 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00097 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99781 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47115 * 60.00442 * 9 7 5 11 11 H 1.48503 * 109.47163 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47280 * 300.00326 * 9 7 5 13 13 C 1.34779 * 120.00162 * 89.99533 * 3 2 1 14 14 O 1.21281 * 120.00200 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99888 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47270 * 186.25713 * 15 13 3 17 17 C 1.47017 * 111.00483 * 189.91387 * 16 15 13 18 18 C 1.53087 * 109.37042 * 177.19489 * 17 16 15 19 19 H 1.09002 * 109.51084 * 297.40695 * 18 17 16 20 20 C 1.52995 * 109.51489 * 177.30414 * 18 17 16 21 21 O 1.43142 * 109.21836 * 57.32718 * 18 17 16 22 22 C 1.42316 * 113.77880 * 302.42353 * 21 18 17 23 23 C 1.54306 * 110.11886 * 295.07777 * 22 21 18 24 24 C 1.55112 * 101.99455 * 261.74896 * 23 22 21 25 25 O 1.44436 * 103.54776 * 323.36207 * 24 23 22 26 26 C 1.43887 * 106.99851 * 39.74447 * 25 24 23 27 27 H 1.08999 * 109.90488 * 214.25414 * 26 25 24 28 28 C 1.53000 * 109.90825 * 93.18303 * 26 25 24 29 29 C 1.47130 * 110.99919 * 66.34765 * 16 15 13 30 30 H 1.09008 * 109.46651 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47358 * 299.99661 * 1 2 3 32 32 H 1.08996 * 109.47018 * 60.00509 * 1 2 3 33 33 H 1.08990 * 109.47335 * 240.00119 * 2 1 3 34 34 H 1.08996 * 109.47018 * 119.99491 * 2 1 3 35 35 H 1.09008 * 109.46819 * 30.00224 * 4 3 2 36 36 H 1.09003 * 109.47224 * 149.99550 * 4 3 2 37 37 H 0.96993 * 119.99926 * 179.97438 * 8 7 5 38 38 H 1.08996 * 109.47665 * 66.25748 * 15 13 3 39 39 H 1.09003 * 109.47063 * 306.25712 * 15 13 3 40 40 H 1.09004 * 109.48428 * 297.16216 * 17 16 15 41 41 H 1.08996 * 109.48842 * 57.21859 * 17 16 15 42 42 H 1.09000 * 109.47474 * 59.99444 * 20 18 17 43 43 H 1.08996 * 109.47560 * 180.02562 * 20 18 17 44 44 H 1.09003 * 109.47077 * 299.99900 * 20 18 17 45 45 H 1.08997 * 110.93637 * 143.55779 * 23 22 21 46 46 H 1.08998 * 110.93198 * 19.92510 * 23 22 21 47 47 H 1.08991 * 110.60931 * 81.88008 * 24 23 22 48 48 H 1.08997 * 110.60458 * 204.85085 * 24 23 22 49 49 H 1.08999 * 109.47154 * 61.45386 * 28 26 25 50 50 H 1.09003 * 109.47024 * 181.44973 * 28 26 25 51 51 H 1.09001 * 109.46740 * 301.44871 * 28 26 25 52 52 H 1.09003 * 109.50051 * 61.38749 * 29 16 15 53 53 H 1.08996 * 109.54109 * 301.29399 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1491 2.3898 -2.8779 8 7 3.3491 3.1259 -3.6180 9 14 5.9131 2.0958 -3.4174 10 1 6.1402 0.6390 -3.5948 11 1 6.1607 2.7959 -4.7034 12 1 6.8410 2.6190 -2.3828 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3061 2.4723 16 7 2.1654 2.2497 3.5847 17 6 2.1616 1.5478 4.8765 18 6 2.4140 2.5543 6.0020 19 1 3.4007 3.0003 5.8770 20 6 2.3440 1.8389 7.3526 21 8 1.4160 3.5791 5.9503 22 6 1.3647 4.2678 4.7060 23 6 2.6763 5.0476 4.4764 24 6 2.2828 6.4794 4.9245 25 8 0.9143 6.6087 4.4807 26 6 0.2704 5.3463 4.7297 27 1 -0.4658 5.1454 3.9514 28 6 -0.4126 5.3709 6.0986 29 6 1.1289 3.2935 3.5570 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 1.5816 1.6877 -2.0284 36 1 2.0954 3.1411 -1.1384 37 1 3.6751 3.5164 -4.4439 38 1 2.6994 0.4837 2.5800 39 1 0.9750 0.9143 2.4832 40 1 1.1940 1.0689 5.0272 41 1 2.9466 0.7917 4.8819 42 1 3.1017 1.0562 7.3890 43 1 2.5234 2.5562 8.1535 44 1 1.3565 1.3947 7.4777 45 1 2.9591 5.0328 3.4239 46 1 3.4787 4.6516 5.0988 47 1 2.3449 6.5728 6.0086 48 1 2.9156 7.2213 4.4375 49 1 -1.1768 6.1481 6.1095 50 1 -0.8760 4.4031 6.2908 51 1 0.3283 5.5788 6.8705 52 1 0.1465 2.8338 3.6655 53 1 1.1769 3.8299 2.6094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364060563.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:06 Heat of formation + Delta-G solvation = -134.055915 kcal Electronic energy + Delta-G solvation = -32466.074758 eV Core-core repulsion = 28337.299399 eV Total energy + Delta-G solvation = -4128.775359 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.01507 -40.67793 -39.15197 -37.10377 -36.42626 -34.89529 -34.22405 -32.27998 -31.76932 -31.49643 -30.12690 -28.87818 -28.06659 -26.09861 -24.95832 -24.28148 -23.63562 -23.25231 -22.03289 -20.48898 -19.83408 -18.63640 -18.10138 -18.02230 -17.63951 -17.32840 -17.05154 -16.61654 -16.22471 -16.05505 -15.68546 -15.50865 -15.13023 -15.03767 -14.70682 -14.57466 -14.37672 -14.26012 -14.09774 -13.68657 -13.62421 -13.32202 -13.23301 -13.17037 -13.11901 -12.93183 -12.85450 -12.69888 -12.65117 -12.57950 -12.50821 -12.23501 -12.15857 -11.95687 -11.89547 -11.77905 -11.71470 -11.31193 -10.75629 -10.67227 -10.64339 -10.37246 -9.45612 -9.31325 -8.22112 -6.37052 1.35455 1.40075 1.47174 1.87200 2.17708 2.39458 2.50151 2.75287 2.87951 3.07243 3.42939 3.59938 3.72735 3.81004 3.84600 4.00263 4.08534 4.14087 4.18099 4.24454 4.27520 4.28865 4.37414 4.42081 4.43169 4.45926 4.60525 4.61840 4.66042 4.68486 4.73189 4.79130 4.88401 4.91659 4.97080 5.02853 5.04224 5.04662 5.08380 5.16422 5.21465 5.31226 5.35565 5.36439 5.58152 5.73754 5.77503 5.87338 5.95889 6.07268 6.25111 6.71190 6.83941 7.29445 7.54809 8.84612 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012822 B = 0.003266 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.138397 B = 8572.314010 C = 9241.618279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.266 3.734 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.495 3.505 14 O -0.576 6.576 15 C 0.052 3.948 16 N -0.534 5.534 17 C 0.025 3.975 18 C 0.080 3.920 19 H 0.061 0.939 20 C -0.133 4.133 21 O -0.361 6.361 22 C 0.107 3.893 23 C -0.163 4.163 24 C 0.048 3.952 25 O -0.391 6.391 26 C 0.082 3.918 27 H 0.095 0.905 28 C -0.142 4.142 29 C 0.043 3.957 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.019 0.981 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.078 0.922 48 H 0.097 0.903 49 H 0.064 0.936 50 H 0.076 0.924 51 H 0.061 0.939 52 H 0.045 0.955 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.264 -6.722 23.294 25.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.145 3.855 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.283 3.717 14 O -0.455 6.455 15 C -0.078 4.078 16 N -0.259 5.259 17 C -0.102 4.102 18 C 0.023 3.977 19 H 0.079 0.921 20 C -0.191 4.191 21 O -0.280 6.280 22 C 0.067 3.933 23 C -0.201 4.201 24 C -0.028 4.028 25 O -0.311 6.311 26 C 0.023 3.977 27 H 0.112 0.888 28 C -0.199 4.199 29 C -0.086 4.086 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.037 0.963 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.123 0.877 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.115 0.885 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.080 0.920 52 H 0.063 0.937 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.837 -5.599 23.122 24.496 hybrid contribution 0.421 -0.241 -1.330 1.415 sum -5.416 -5.840 21.793 23.203 Atomic orbital electron populations 1.22151 0.94826 1.03450 1.01396 1.21725 0.95083 0.81466 1.03936 1.48291 1.64246 1.15103 1.06166 1.18625 0.95148 0.91313 0.80432 1.21684 0.97907 1.31954 1.06440 0.92836 1.25861 1.02345 0.94494 0.96467 1.70050 1.37826 1.34236 1.14813 0.85485 0.79069 0.79066 0.77295 1.18314 1.20427 1.20425 1.21153 0.77555 0.86781 0.86196 1.90632 1.46833 1.20343 1.87697 1.22018 1.03370 0.94904 0.87545 1.61766 1.48342 1.13166 1.02636 1.22956 1.02707 0.97003 0.87522 1.22425 0.91664 0.87534 0.96094 0.92110 1.21708 1.03680 1.00419 0.93275 1.87905 1.57554 1.50177 1.32413 1.22120 0.95181 0.91909 0.84135 1.23449 0.98216 0.96036 1.02424 1.23674 0.82484 0.96692 0.99907 1.88934 1.24526 1.33086 1.84520 1.22759 0.93407 0.81801 0.99690 0.88754 1.21853 1.00488 1.02748 0.94857 1.22577 0.92760 0.94160 0.99073 0.88533 0.92548 0.94430 0.90985 0.88116 0.96330 0.98901 0.92472 0.85697 0.89877 0.92739 0.87690 0.89000 0.91363 0.91436 0.91965 0.89000 0.90360 0.88466 0.91721 0.90507 0.91984 0.93675 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 10.18 71.98 0.73 -3.14 16 2 C 0.10 2.96 5.85 86.38 0.50 3.47 16 3 N -0.61 -25.46 2.46 -826.16 -2.03 -27.49 16 4 C 0.27 14.55 5.16 85.63 0.44 14.99 16 5 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 9 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 C 0.50 20.39 7.25 87.66 0.64 21.03 16 14 O -0.58 -29.85 14.25 -3.03 -0.04 -29.90 16 15 C 0.05 1.43 3.91 85.56 0.33 1.77 16 16 N -0.53 -14.74 4.21 -900.74 -3.80 -18.54 16 17 C 0.03 0.48 4.91 86.31 0.42 0.91 16 18 C 0.08 1.48 3.14 30.62 0.10 1.58 16 19 H 0.06 1.25 6.39 -2.39 -0.02 1.24 16 20 C -0.13 -1.58 9.57 71.98 0.69 -0.90 16 21 O -0.36 -8.03 8.14 -148.98 -1.21 -9.24 16 22 C 0.11 2.82 0.96 -10.30 -0.01 2.81 16 23 C -0.16 -4.65 5.97 31.76 0.19 -4.46 16 24 C 0.05 1.23 7.68 72.71 0.56 1.79 16 25 O -0.39 -11.64 11.20 -148.98 -1.67 -13.31 16 26 C 0.08 2.11 3.75 30.82 0.12 2.23 16 27 H 0.09 2.47 7.68 -2.39 -0.02 2.45 16 28 C -0.14 -2.90 8.57 71.98 0.62 -2.28 16 29 C 0.04 1.26 3.65 86.09 0.31 1.58 16 30 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.27 7.12 -2.39 -0.02 1.26 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 34 H 0.10 2.20 6.61 -2.39 -0.02 2.19 16 35 H 0.02 1.04 8.07 -2.38 -0.02 1.02 16 36 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 37 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 38 H 0.13 2.81 7.61 -2.39 -0.02 2.79 16 39 H 0.08 1.86 6.83 -2.39 -0.02 1.84 16 40 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.10 1.60 8.08 -2.39 -0.02 1.58 16 42 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 2.28 7.78 -2.39 -0.02 2.26 16 46 H 0.09 2.38 6.20 -2.39 -0.01 2.36 16 47 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.08 1.43 7.89 -2.39 -0.02 1.41 16 51 H 0.06 1.27 7.88 -2.39 -0.02 1.25 16 52 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 53 H 0.07 2.56 6.03 -2.39 -0.01 2.54 16 Total: -1.00 -76.87 407.05 0.78 -76.09 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.87 Total: 20.84 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.35 Total: 10.95 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -5.54 Total: -102.90 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -2.93 Total: -52.44 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -76.87 0.78 -76.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364060563.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.961 kcal (2) G-P(sol) polarization free energy of solvation -76.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds