Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47257 * 2 1 4 4 C 1.50695 * 109.47406 * 239.99220 * 2 1 3 5 5 O 1.21278 * 120.00507 * 240.00250 * 4 2 1 6 6 N 1.34784 * 119.99910 * 60.00052 * 4 2 1 7 7 C 1.46497 * 120.00061 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47000 * 180.02562 * 7 6 4 9 9 H 1.09005 * 109.49798 * 305.00223 * 8 7 6 10 10 C 1.53038 * 109.49808 * 184.93769 * 8 7 6 11 11 C 1.53042 * 109.54078 * 178.71668 * 10 8 7 12 12 C 1.53191 * 109.33898 * 61.31315 * 11 10 8 13 13 N 1.46927 * 108.77832 * 305.38287 * 12 11 10 14 14 C 1.36936 * 120.63225 * 233.62882 * 13 12 11 15 15 H 1.07995 * 119.99999 * 151.80376 * 14 13 12 16 16 C 1.38813 * 119.99617 * 331.81085 * 14 13 12 17 17 N 1.31610 * 120.00468 * 343.08105 * 16 14 13 18 18 Si 1.86803 * 119.99495 * 163.08518 * 16 14 13 19 19 H 1.48502 * 109.47300 * 89.99788 * 18 16 14 20 20 H 1.48501 * 109.46879 * 209.99653 * 18 16 14 21 21 H 1.48502 * 109.47322 * 329.99112 * 18 16 14 22 22 C 1.46928 * 118.73378 * 53.60715 * 13 12 11 23 23 C 1.50706 * 109.47090 * 119.99459 * 2 1 3 24 24 O 1.20824 * 120.00176 * 119.99805 * 23 2 1 25 25 O 1.34233 * 119.99885 * 300.00010 * 23 2 1 26 26 C 1.45198 * 116.99967 * 179.97438 * 25 23 2 27 27 C 1.53007 * 109.46922 * 60.00053 * 26 25 23 28 28 C 1.52993 * 109.47279 * 300.00592 * 26 25 23 29 29 C 1.52994 * 109.47264 * 180.02562 * 26 25 23 30 30 H 1.08998 * 109.47252 * 300.00896 * 1 2 3 31 31 H 1.09001 * 109.46601 * 60.00476 * 1 2 3 32 32 H 1.09000 * 109.47215 * 180.02562 * 1 2 3 33 33 H 0.96998 * 119.99482 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.47157 * 300.00160 * 7 6 4 35 35 H 1.09000 * 109.46795 * 60.00121 * 7 6 4 36 36 H 1.09003 * 109.46100 * 298.70285 * 10 8 7 37 37 H 1.08994 * 109.46225 * 58.66051 * 10 8 7 38 38 H 1.09004 * 109.47143 * 301.36416 * 11 10 8 39 39 H 1.09001 * 109.50026 * 181.28242 * 11 10 8 40 40 H 1.09002 * 109.58975 * 185.59516 * 12 11 10 41 41 H 1.09006 * 109.70312 * 65.23741 * 12 11 10 42 42 H 0.97004 * 120.00377 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.58099 * 186.60528 * 22 13 12 44 44 H 1.09001 * 109.70559 * 66.25139 * 22 13 12 45 45 H 1.08995 * 109.47155 * 299.99947 * 27 26 25 46 46 H 1.08993 * 109.47179 * 179.97438 * 27 26 25 47 47 H 1.09001 * 109.46814 * 59.99870 * 27 26 25 48 48 H 1.09005 * 109.47351 * 179.97438 * 28 26 25 49 49 H 1.09004 * 109.46887 * 299.99560 * 28 26 25 50 50 H 1.08995 * 109.47511 * 59.99617 * 28 26 25 51 51 H 1.09001 * 109.47104 * 300.00517 * 29 26 25 52 52 H 1.08997 * 109.47292 * 59.99953 * 29 26 25 53 53 H 1.08993 * 109.47386 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7068 -0.2502 -2.4545 7 6 2.1956 -0.9406 -3.6506 8 6 1.6861 -0.2192 -4.8999 9 1 0.5997 -0.1408 -4.8571 10 6 2.0925 -1.0080 -6.1467 11 6 1.5558 -0.3042 -7.3952 12 6 2.1660 1.0978 -7.4890 13 7 1.9028 1.8132 -6.2330 14 6 1.3004 3.0429 -6.2434 15 1 0.7098 3.3621 -5.3975 16 6 1.4489 3.8791 -7.3414 17 7 2.4108 3.6576 -8.2120 18 14 0.2835 5.3188 -7.5832 19 1 0.8341 6.5205 -6.9064 20 1 0.1314 5.5942 -9.0345 21 1 -1.0416 4.9863 -7.0010 22 6 2.2978 1.1837 -4.9655 23 6 2.0323 -0.7103 1.2306 24 8 2.7269 -1.6927 1.1199 25 8 1.7080 -0.2516 2.4497 26 6 2.2267 -0.9860 3.5898 27 6 3.7561 -0.9856 3.5438 28 6 1.7156 -2.4273 3.5435 29 6 1.7547 -0.3193 4.8835 30 1 -0.3633 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.1494 0.5386 -2.5436 34 1 3.2856 -0.9402 -3.6504 35 1 1.8327 -1.9684 -3.6506 36 1 3.1796 -1.0654 -6.2019 37 1 1.6784 -2.0147 -6.0905 38 1 0.4706 -0.2250 -7.3295 39 1 1.8261 -0.8786 -8.2813 40 1 1.7126 1.6389 -8.3196 41 1 3.2418 1.0206 -7.6470 42 1 2.5147 4.2422 -8.9791 43 1 1.9313 1.7815 -4.1309 44 1 3.3842 1.1115 -4.9138 45 1 4.0919 -1.4608 2.6222 46 1 4.1455 -1.5365 4.3999 47 1 4.1202 0.0413 3.5768 48 1 2.1053 -2.9788 4.3991 49 1 0.6260 -2.4276 3.5762 50 1 2.0515 -2.9025 2.6219 51 1 2.1185 0.7076 4.9167 52 1 0.6652 -0.3200 4.9160 53 1 2.1444 -0.8704 5.7393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414245475.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -135.479907 kcal Electronic energy + Delta-G solvation = -30799.159262 eV Core-core repulsion = 26670.322154 eV Total energy + Delta-G solvation = -4128.837108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.13697 -40.71857 -39.36364 -37.85693 -36.19993 -35.44917 -34.71729 -33.99484 -32.27762 -31.68053 -28.39448 -28.28354 -27.28664 -26.98968 -26.21985 -24.01232 -23.68673 -22.43639 -21.44977 -20.67287 -20.30713 -18.68354 -18.44441 -17.95973 -17.37012 -17.11246 -16.79931 -16.60743 -16.41749 -15.82614 -15.54934 -15.19020 -15.14861 -15.00518 -14.87735 -14.51933 -14.47516 -13.98615 -13.85095 -13.70453 -13.41603 -13.32341 -13.17942 -13.11414 -12.98370 -12.92176 -12.85110 -12.83781 -12.74933 -12.47070 -12.38091 -12.24852 -12.05277 -11.96145 -11.80347 -11.55926 -11.36895 -11.32520 -11.10819 -11.04358 -10.51832 -10.50475 -10.05698 -8.65194 -7.84277 -5.30118 1.22149 1.42093 1.49030 1.51091 1.59804 1.60113 2.31546 2.53559 3.31096 3.36464 3.61392 3.73239 3.77195 3.78357 3.89862 3.95938 4.01137 4.03111 4.07427 4.12783 4.42124 4.56811 4.58758 4.59555 4.63103 4.72512 4.75218 4.76875 4.79200 4.82401 4.88849 4.89783 4.90884 4.93824 5.02511 5.12484 5.12890 5.19084 5.24951 5.25342 5.31089 5.35010 5.40132 5.49367 5.55799 5.59740 5.69369 5.80273 6.41462 6.52176 6.85585 7.17362 7.23952 7.88917 8.41440 9.22231 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.002245 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.177743 B =12467.507133 C =13506.007370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 H 0.160 0.840 4 C 0.512 3.488 5 O -0.553 6.553 6 N -0.711 5.711 7 C 0.140 3.860 8 C -0.098 4.098 9 H 0.081 0.919 10 C -0.099 4.099 11 C -0.129 4.129 12 C 0.172 3.828 13 N -0.609 5.609 14 C -0.258 4.258 15 H 0.074 0.926 16 C -0.055 4.055 17 N -0.938 5.938 18 Si 0.966 3.034 19 H -0.286 1.286 20 H -0.298 1.298 21 H -0.266 1.266 22 C 0.152 3.848 23 C 0.463 3.537 24 O -0.493 6.493 25 O -0.349 6.349 26 C 0.107 3.893 27 C -0.182 4.182 28 C -0.180 4.180 29 C -0.134 4.134 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.414 0.586 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.051 0.949 41 H -0.010 1.010 42 H 0.248 0.752 43 H 0.062 0.938 44 H 0.003 0.997 45 H 0.053 0.947 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.068 0.932 50 H 0.053 0.947 51 H 0.070 0.930 52 H 0.073 0.927 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.732 -8.778 23.436 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 H 0.177 0.823 4 C 0.297 3.703 5 O -0.429 6.429 6 N -0.365 5.365 7 C 0.015 3.985 8 C -0.119 4.119 9 H 0.100 0.900 10 C -0.137 4.137 11 C -0.168 4.168 12 C 0.047 3.953 13 N -0.332 5.332 14 C -0.388 4.388 15 H 0.092 0.908 16 C -0.250 4.250 17 N -0.585 5.585 18 Si 0.794 3.206 19 H -0.213 1.213 20 H -0.224 1.224 21 H -0.190 1.190 22 C 0.026 3.974 23 C 0.304 3.696 24 O -0.379 6.379 25 O -0.267 6.267 26 C 0.072 3.928 27 C -0.239 4.239 28 C -0.237 4.237 29 C -0.191 4.191 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.251 0.749 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.008 0.992 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.021 0.979 45 H 0.072 0.928 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.107 0.893 49 H 0.087 0.913 50 H 0.072 0.928 51 H 0.089 0.911 52 H 0.092 0.908 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.974 -9.709 23.385 25.804 hybrid contribution 0.001 1.117 -0.836 1.396 sum -4.973 -8.592 22.548 24.637 Atomic orbital electron populations 1.21772 0.87502 1.03713 1.06253 1.21088 1.01603 1.02479 0.87386 0.82305 1.20321 0.80347 0.84536 0.85061 1.90831 1.38194 1.27218 1.86699 1.45875 1.53534 1.32437 1.04638 1.21241 0.98534 0.95872 0.82820 1.21706 1.01091 0.95694 0.93379 0.90019 1.21345 1.00360 0.98519 0.93442 1.21990 1.00205 0.96686 0.97935 1.20625 0.94999 0.90481 0.89229 1.44312 1.69929 1.17523 1.01448 1.19552 1.22785 0.92730 1.03753 0.90798 1.25835 0.98930 1.00520 0.99716 1.70200 1.32137 1.40722 1.15392 0.85297 0.79478 0.79410 0.76374 1.21272 1.22430 1.19043 1.21034 0.95234 0.92521 0.88593 1.23180 0.77993 0.83146 0.85286 1.90730 1.34497 1.25707 1.86947 1.86509 1.69914 1.55878 1.14423 1.22471 0.93910 0.91995 0.84457 1.22466 0.94485 1.03083 1.03866 1.22448 1.01989 0.95418 1.03842 1.21856 1.02818 1.01607 0.92803 0.88253 0.88442 0.92492 0.74879 0.92899 0.91192 0.92946 0.90266 0.92603 0.91447 0.93050 0.99167 0.94300 0.91987 0.97927 0.92840 0.89201 0.91613 0.89267 0.91346 0.92841 0.91081 0.90822 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.02 71.98 0.65 -1.10 16 2 C -0.10 -1.97 3.16 -12.29 -0.04 -2.01 16 3 H 0.16 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.51 13.60 7.15 87.65 0.63 14.23 16 5 O -0.55 -20.24 14.19 20.42 0.29 -19.95 16 6 N -0.71 -16.68 5.22 -463.07 -2.42 -19.10 16 7 C 0.14 3.75 5.07 86.38 0.44 4.19 16 8 C -0.10 -2.92 2.37 -10.72 -0.03 -2.95 16 9 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 10 C -0.10 -2.98 5.17 30.62 0.16 -2.82 16 11 C -0.13 -4.62 6.08 30.67 0.19 -4.43 16 12 C 0.17 8.18 5.30 86.36 0.46 8.64 16 13 N -0.61 -29.25 2.99 -699.09 -2.09 -31.34 16 14 C -0.26 -13.52 9.58 84.03 0.81 -12.71 16 15 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 16 C -0.05 -3.00 4.92 84.86 0.42 -2.58 16 17 N -0.94 -55.12 11.20 21.65 0.24 -54.88 16 18 Si 0.97 43.52 29.59 68.60 2.03 45.55 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 C 0.15 5.78 5.60 86.36 0.48 6.27 16 23 C 0.46 11.22 6.56 71.24 0.47 11.69 16 24 O -0.49 -15.80 9.68 29.73 0.29 -15.52 16 25 O -0.35 -6.96 9.79 -51.44 -0.50 -7.47 16 26 C 0.11 1.82 1.13 -10.80 -0.01 1.81 16 27 C -0.18 -3.30 8.37 71.98 0.60 -2.69 16 28 C -0.18 -3.12 8.37 71.98 0.60 -2.52 16 29 C -0.13 -1.36 8.85 71.98 0.64 -0.72 16 30 H 0.10 0.97 8.11 -2.39 -0.02 0.95 16 31 H 0.10 0.93 7.56 -2.39 -0.02 0.92 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.41 7.82 7.12 -92.71 -0.66 7.16 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.05 2.78 6.06 -2.39 -0.01 2.76 16 41 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 42 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.06 2.17 7.14 -2.39 -0.02 2.16 16 44 H 0.00 0.11 8.14 -2.39 -0.02 0.10 16 45 H 0.05 1.34 5.89 -2.39 -0.01 1.33 16 46 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 49 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.05 1.30 5.89 -2.39 -0.01 1.29 16 51 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 53 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -74.49 411.21 4.51 -69.98 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.22 Total: 20.45 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.46 Total: 12.27 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -4.27 Total: -105.32 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: 0.07 Total: -42.94 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.49 4.51 -69.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414245475.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.503 kcal (2) G-P(sol) polarization free energy of solvation -74.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds