Wall clock time and date at job start Sat Apr 11 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 113.99750 * 2 1 4 4 C 1.52993 * 109.47148 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47354 * 65.00184 * 4 3 2 6 6 C 1.37099 * 120.00420 * 265.88236 * 5 4 3 7 7 H 1.07994 * 120.00716 * 138.14939 * 6 5 4 8 8 C 1.38954 * 119.99551 * 318.14686 * 6 5 4 9 9 N 1.31410 * 119.99989 * 341.74524 * 8 6 5 10 10 Si 1.86800 * 119.99900 * 161.74030 * 8 6 5 11 11 H 1.48500 * 109.46918 * 60.00362 * 10 8 6 12 12 H 1.48501 * 109.46832 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47266 * 300.00343 * 10 8 6 14 14 C 1.34775 * 119.99775 * 85.87388 * 5 4 3 15 15 O 1.21290 * 120.00072 * 5.51208 * 14 5 4 16 16 C 1.50702 * 120.00244 * 185.50441 * 14 5 4 17 17 H 1.09005 * 109.46666 * 37.97355 * 16 14 5 18 18 C 1.53000 * 109.47347 * 277.98285 * 16 14 5 19 19 N 1.46498 * 109.47311 * 157.97696 * 16 14 5 20 20 C 1.34780 * 119.99813 * 205.00358 * 19 16 14 21 21 O 1.21282 * 120.00003 * 359.97438 * 20 19 16 22 22 C 1.50704 * 119.99870 * 179.97438 * 20 19 16 23 23 C 1.52998 * 109.46961 * 179.97438 * 22 20 19 24 24 C 1.53005 * 109.47472 * 295.00311 * 23 22 20 25 25 C 1.52995 * 109.47129 * 180.02562 * 24 23 22 26 26 C 1.52996 * 109.47366 * 59.99801 * 25 24 23 27 27 C 1.52997 * 109.47207 * 299.99996 * 26 25 24 28 28 C 1.52996 * 109.46865 * 175.00209 * 23 22 20 29 29 H 1.08993 * 109.47159 * 299.99710 * 1 2 3 30 30 H 1.09003 * 109.47162 * 59.99959 * 1 2 3 31 31 H 1.09002 * 109.46576 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46632 * 59.99965 * 3 2 1 33 33 H 1.08998 * 109.47518 * 300.00342 * 3 2 1 34 34 H 1.09006 * 109.47399 * 305.00511 * 4 3 2 35 35 H 1.09004 * 109.47241 * 185.00497 * 4 3 2 36 36 H 0.97003 * 119.99823 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47405 * 61.68487 * 18 16 14 38 38 H 1.09000 * 109.47175 * 181.69207 * 18 16 14 39 39 H 1.09007 * 109.46576 * 301.68746 * 18 16 14 40 40 H 0.96999 * 120.00129 * 25.00407 * 19 16 14 41 41 H 1.08992 * 109.46899 * 300.00395 * 22 20 19 42 42 H 1.09006 * 109.46579 * 60.00117 * 22 20 19 43 43 H 1.09002 * 109.47404 * 54.99962 * 23 22 20 44 44 H 1.09002 * 109.46521 * 300.00191 * 24 23 22 45 45 H 1.08997 * 109.46985 * 59.99382 * 24 23 22 46 46 H 1.09002 * 109.47245 * 299.99344 * 25 24 23 47 47 H 1.09006 * 109.46866 * 180.02562 * 25 24 23 48 48 H 1.08999 * 109.46982 * 179.97438 * 26 25 24 49 49 H 1.09002 * 109.47222 * 60.00133 * 26 25 24 50 50 H 1.09002 * 109.47141 * 300.00186 * 27 26 25 51 51 H 1.08999 * 109.47490 * 180.02562 * 27 26 25 52 52 H 1.08997 * 109.47502 * 299.99879 * 28 23 22 53 53 H 1.09002 * 109.47222 * 60.00246 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5642 -1.2508 6 6 4.1794 -0.7904 -1.3101 7 1 3.8471 -1.3490 -2.1726 8 6 4.8125 -1.4447 -0.2604 9 7 5.5272 -0.7608 0.6046 10 14 4.6474 -3.2965 -0.0788 11 1 5.1842 -3.9627 -1.2926 12 1 5.4111 -3.7470 1.1124 13 1 3.2153 -3.6518 0.0885 14 6 4.1833 1.3250 -2.3440 15 8 4.1013 2.5326 -2.2668 16 6 4.5163 0.6751 -3.6623 17 1 3.9407 -0.2442 -3.7699 18 6 6.0106 0.3493 -3.7073 19 7 4.1831 1.5909 -4.7562 20 6 3.9082 1.1040 -5.9825 21 8 3.9372 -0.0922 -6.1806 22 6 3.5648 2.0460 -7.1076 23 6 3.2993 1.2425 -8.3823 24 6 4.5865 0.5409 -8.8204 25 6 4.3210 -0.2620 -10.0954 26 6 3.8520 0.6820 -11.2043 27 6 2.5649 1.3836 -10.7663 28 6 2.8300 2.1862 -9.4914 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1768 0.0903 36 1 5.9688 -1.2175 1.3376 37 1 6.2529 -0.3555 -2.9118 38 1 6.2570 -0.0933 -4.6724 39 1 6.5863 1.2646 -3.5696 40 1 4.1602 2.5476 -4.5978 41 1 2.6739 2.6162 -6.8449 42 1 4.3971 2.7294 -7.2761 43 1 2.5275 0.4977 -8.1883 44 1 5.3582 1.2858 -9.0145 45 1 4.9208 -0.1313 -8.0302 46 1 3.5491 -1.0069 -9.9017 47 1 5.2380 -0.7622 -10.4073 48 1 3.6634 0.1100 -12.1128 49 1 4.6239 1.4268 -11.3981 50 1 1.7930 0.6388 -10.5725 51 1 2.2305 2.0559 -11.5564 52 1 1.9130 2.6860 -9.1794 53 1 3.6018 2.9310 -9.6855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457184826.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:30 Heat of formation + Delta-G solvation = -160.954199 kcal Electronic energy + Delta-G solvation = -31311.367730 eV Core-core repulsion = 27181.425973 eV Total energy + Delta-G solvation = -4129.941756 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.37515 -40.44499 -39.02849 -38.54748 -36.70897 -35.79884 -33.69417 -33.55429 -32.03285 -31.52668 -30.48843 -27.96997 -27.30460 -26.72837 -25.30873 -23.58347 -23.36443 -22.34452 -21.13582 -20.99618 -20.55002 -19.18699 -18.30250 -17.41723 -17.20097 -17.05085 -16.76040 -16.39373 -16.18749 -16.02161 -15.95405 -15.71854 -15.39385 -14.99318 -14.87935 -14.85288 -14.53970 -14.25403 -13.73716 -13.64959 -13.34843 -13.24612 -13.17903 -12.98009 -12.90588 -12.84939 -12.75087 -12.67628 -12.56010 -12.44522 -12.31210 -12.09678 -11.92779 -11.81034 -11.79725 -11.28655 -11.21456 -11.02241 -10.87214 -10.57906 -10.54090 -10.38641 -10.00264 -9.42881 -8.28300 -6.05075 1.43233 1.48969 1.56272 1.70658 1.90140 2.14001 2.40306 2.92996 3.01106 3.14618 3.74182 3.79495 3.88097 4.03028 4.11325 4.22217 4.27980 4.29256 4.35481 4.38217 4.42027 4.50454 4.53239 4.56950 4.59489 4.60890 4.65281 4.71960 4.73264 4.78876 4.81273 4.86578 4.89234 4.91422 4.92625 5.09818 5.22730 5.24727 5.30741 5.31014 5.34951 5.37903 5.44604 5.47831 5.53115 5.63604 5.67045 6.00720 6.38622 6.39364 6.65336 7.13527 7.32421 7.52643 7.92934 8.75676 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013606 B = 0.002821 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.396582 B = 9922.151167 C =10556.570823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.063 3.937 4 C 0.116 3.884 5 N -0.430 5.430 6 C -0.338 4.338 7 H 0.081 0.919 8 C 0.020 3.980 9 N -0.888 5.888 10 Si 0.968 3.032 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.273 1.273 14 C 0.463 3.537 15 O -0.624 6.624 16 C 0.151 3.849 17 H 0.083 0.917 18 C -0.131 4.131 19 N -0.710 5.710 20 C 0.507 3.493 21 O -0.576 6.576 22 C -0.128 4.128 23 C -0.067 4.067 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.116 4.116 27 C -0.119 4.119 28 C -0.109 4.109 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.271 0.729 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.411 0.589 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.047 0.953 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.053 0.947 51 H 0.076 0.924 52 H 0.071 0.929 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 5.450 -15.186 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.014 4.014 4 C -0.007 4.007 5 N -0.146 5.146 6 C -0.465 4.465 7 H 0.098 0.902 8 C -0.184 4.184 9 N -0.525 5.525 10 Si 0.793 3.207 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.198 1.198 14 C 0.252 3.748 15 O -0.512 6.512 16 C 0.043 3.957 17 H 0.101 0.899 18 C -0.190 4.190 19 N -0.363 5.363 20 C 0.296 3.704 21 O -0.456 6.456 22 C -0.168 4.168 23 C -0.086 4.086 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.153 4.153 27 C -0.156 4.156 28 C -0.147 4.147 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.248 0.752 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.072 0.928 51 H 0.094 0.906 52 H 0.090 0.910 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.544 4.975 -15.055 16.797 hybrid contribution -0.129 -0.486 0.887 1.020 sum -5.673 4.489 -14.167 15.907 Atomic orbital electron populations 1.22878 0.80666 1.03249 1.00297 1.88082 1.20434 1.27860 1.95315 1.22842 0.94292 0.84635 0.99634 1.21369 0.91433 0.98007 0.89921 1.43365 1.55878 1.07089 1.08293 1.19275 1.37999 0.82009 1.07257 0.90183 1.25918 0.93090 1.03230 0.96121 1.69989 1.28269 1.38343 1.15931 0.85374 0.78425 0.78931 0.77979 1.19249 1.20554 1.19812 1.20798 0.79921 0.86589 0.87505 1.90463 1.59055 1.14949 1.86739 1.20262 0.97897 0.92926 0.84603 0.89917 1.21753 0.93200 1.01688 1.02325 1.45975 1.70370 1.11131 1.08868 1.21471 0.75325 0.89860 0.83785 1.90647 1.53604 1.18059 1.83249 1.21812 1.05227 0.97847 0.91891 1.20869 0.97847 0.96928 0.92971 1.21662 0.97186 0.99389 0.97477 1.21494 1.00691 0.98036 0.95302 1.21532 0.97802 0.98542 0.97464 1.21522 0.97397 0.99271 0.97450 1.21567 1.01773 0.97413 0.93936 0.92747 0.94302 0.89069 0.91192 0.94957 0.89276 0.91721 0.91914 0.91577 0.91682 0.92717 0.75224 0.87029 0.86668 0.92747 0.91740 0.93089 0.93372 0.92205 0.91568 0.91407 0.92813 0.90561 0.91010 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.50 10.37 -148.98 -1.55 -18.05 16 3 C 0.06 2.55 6.26 71.98 0.45 3.00 16 4 C 0.12 5.50 5.35 86.38 0.46 5.96 16 5 N -0.43 -21.46 2.45 -635.55 -1.56 -23.02 16 6 C -0.34 -17.33 7.34 84.04 0.62 -16.72 16 7 H 0.08 4.15 6.64 -2.91 -0.02 4.14 16 8 C 0.02 1.03 4.96 84.93 0.42 1.45 16 9 N -0.89 -46.91 11.65 21.66 0.25 -46.66 16 10 Si 0.97 41.31 29.59 68.60 2.03 43.34 16 11 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 14 C 0.46 22.08 6.85 87.66 0.60 22.68 16 15 O -0.62 -30.69 15.57 -3.06 -0.05 -30.74 16 16 C 0.15 6.38 2.27 44.25 0.10 6.48 16 17 H 0.08 3.85 6.16 -2.38 -0.01 3.83 16 18 C -0.13 -5.25 9.38 71.98 0.68 -4.57 16 19 N -0.71 -24.64 5.05 -446.08 -2.25 -26.90 16 20 C 0.51 16.23 7.51 87.66 0.66 16.89 16 21 O -0.58 -22.60 13.63 -3.03 -0.04 -22.64 16 22 C -0.13 -2.75 5.17 29.85 0.15 -2.59 16 23 C -0.07 -1.44 1.84 -10.79 -0.02 -1.46 16 24 C -0.12 -2.77 4.95 30.59 0.15 -2.62 16 25 C -0.12 -2.38 5.92 30.59 0.18 -2.20 16 26 C -0.12 -1.79 5.92 30.59 0.18 -1.60 16 27 C -0.12 -1.74 5.92 30.58 0.18 -1.56 16 28 C -0.11 -1.67 5.20 30.58 0.16 -1.51 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 4.55 5.79 -2.38 -0.01 4.54 16 35 H 0.06 3.07 7.48 -2.38 -0.02 3.05 16 36 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 37 H 0.07 2.92 7.23 -2.39 -0.02 2.90 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.41 13.17 7.75 -92.71 -0.72 12.45 16 41 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.05 1.42 7.95 -2.39 -0.02 1.40 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.05 1.54 5.95 -2.39 -0.01 1.53 16 46 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -64.12 415.31 3.22 -60.90 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: 0.17 Total: 40.14 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 6.22 Total: 23.63 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -3.56 Total: -96.58 kcal Atomic # 8 Polarization: -69.80 SS G_CDS: -1.63 Total: -71.43 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -64.12 3.22 -60.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184826.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.058 kcal (2) G-P(sol) polarization free energy of solvation -64.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds