Wall clock time and date at job start Sat Apr 11 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46977 * 2 1 4 4 C 1.46500 * 120.00334 * 265.07276 * 3 2 1 5 5 C 1.50705 * 109.46633 * 89.99858 * 4 3 2 6 6 H 1.07997 * 120.00263 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99622 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00105 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00295 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47432 * 89.99243 * 9 7 5 11 11 H 1.48506 * 109.47047 * 209.99764 * 9 7 5 12 12 H 1.48507 * 109.46759 * 329.99173 * 9 7 5 13 13 C 1.34777 * 120.00036 * 85.07941 * 3 2 1 14 14 O 1.21277 * 120.00529 * 185.31975 * 13 3 2 15 15 C 1.50703 * 120.00009 * 5.31416 * 13 3 2 16 16 H 1.09002 * 110.64241 * 327.80501 * 15 13 3 17 17 C 1.55159 * 110.72466 * 204.65818 * 15 13 3 18 18 C 1.54906 * 101.58161 * 206.13723 * 17 15 13 19 19 N 1.47428 * 104.83553 * 37.00665 * 18 17 15 20 20 C 1.34777 * 125.64737 * 155.89942 * 19 18 17 21 21 O 1.21504 * 119.99930 * 179.97438 * 20 19 18 22 22 O 1.34637 * 119.99931 * 359.97438 * 20 19 18 23 23 C 1.45201 * 116.99900 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.47103 * 59.99353 * 23 22 20 25 25 C 1.53000 * 109.47292 * 179.97438 * 23 22 20 26 26 C 1.53008 * 109.47125 * 299.99927 * 23 22 20 27 27 C 1.47317 * 108.73292 * 335.71643 * 19 18 17 28 28 H 1.08996 * 110.05935 * 241.86593 * 27 19 18 29 29 C 1.53007 * 109.84789 * 120.60814 * 27 19 18 30 30 H 1.08995 * 109.47319 * 65.07623 * 1 2 3 31 31 H 1.09000 * 109.46798 * 185.07658 * 1 2 3 32 32 H 1.08998 * 109.46957 * 305.07104 * 1 2 3 33 33 H 1.09001 * 109.47036 * 240.00132 * 2 1 3 34 34 H 1.09005 * 109.46889 * 120.00392 * 2 1 3 35 35 H 1.08995 * 109.47462 * 210.00044 * 4 3 2 36 36 H 1.08999 * 109.46784 * 330.00875 * 4 3 2 37 37 H 0.97000 * 120.00659 * 180.02562 * 8 7 5 38 38 H 1.09004 * 110.99912 * 324.21190 * 17 15 13 39 39 H 1.08995 * 110.99926 * 88.02344 * 17 15 13 40 40 H 1.09003 * 110.36784 * 155.85030 * 18 17 15 41 41 H 1.09000 * 110.36580 * 278.05669 * 18 17 15 42 42 H 1.09002 * 109.46739 * 60.00579 * 24 23 22 43 43 H 1.09005 * 109.46814 * 180.02562 * 24 23 22 44 44 H 1.08995 * 109.47403 * 300.00184 * 24 23 22 45 45 H 1.08996 * 109.46687 * 59.99931 * 25 23 22 46 46 H 1.09001 * 109.46832 * 180.02562 * 25 23 22 47 47 H 1.08992 * 109.46805 * 299.99640 * 25 23 22 48 48 H 1.09001 * 109.46910 * 59.99643 * 26 23 22 49 49 H 1.08997 * 109.47197 * 179.97438 * 26 23 22 50 50 H 1.09000 * 109.46594 * 299.99977 * 26 23 22 51 51 H 1.08988 * 109.47446 * 306.74019 * 29 27 19 52 52 H 1.09000 * 109.46763 * 66.73962 * 29 27 19 53 53 H 1.08996 * 109.46786 * 186.73097 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3652 2.0356 -1.2640 5 6 1.1494 2.7317 -1.8194 6 1 0.2123 2.6912 -1.2841 7 6 1.2339 3.4213 -3.0103 8 7 0.1731 4.0293 -3.4948 9 14 2.8550 3.4921 -3.9358 10 1 2.9370 2.3480 -4.8788 11 1 2.9365 4.7660 -4.6946 12 1 3.9802 3.4188 -2.9694 13 6 2.1485 2.0500 1.1629 14 8 2.4598 3.2221 1.1569 15 6 1.9072 1.3412 2.4708 16 1 1.1447 0.5709 2.3554 17 6 1.5037 2.3519 3.5767 18 6 1.9673 1.6135 4.8571 19 7 3.2212 0.9406 4.4717 20 6 4.2057 0.5714 5.3148 21 8 5.1994 0.0204 4.8844 22 8 4.0882 0.8133 6.6341 23 6 5.1868 0.3877 7.4827 24 6 6.4713 1.0962 7.0476 25 6 4.8756 0.7450 8.9375 26 6 5.3717 -1.1259 7.3571 27 6 3.2185 0.7344 3.0130 28 1 3.2558 -0.3310 2.7860 29 6 4.4193 1.4455 2.3856 30 1 -0.3634 0.4330 -0.9319 31 1 -0.3633 -1.0237 0.0909 32 1 -0.3633 0.5905 0.8411 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.1547 2.7666 -1.0900 36 1 2.7129 1.2878 -1.9767 37 1 0.2323 4.5141 -4.3328 38 1 2.0351 3.2959 3.4560 39 1 0.4255 2.5113 3.5856 40 1 2.1508 2.3265 5.6608 41 1 1.2206 0.8811 5.1640 42 1 6.3397 2.1745 7.1371 43 1 7.2962 0.7763 7.6844 44 1 6.6933 0.8420 6.0112 45 1 3.9605 0.2406 9.2476 46 1 5.7006 0.4260 9.5744 47 1 4.7443 1.8233 9.0266 48 1 5.5936 -1.3800 6.3206 49 1 6.1967 -1.4453 7.9937 50 1 4.4566 -1.6306 7.6670 51 1 4.4267 2.4898 2.6973 52 1 5.3396 0.9620 2.7133 53 1 4.3470 1.3908 1.2995 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492668496.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:35 Heat of formation + Delta-G solvation = -110.178420 kcal Electronic energy + Delta-G solvation = -32008.924298 eV Core-core repulsion = 27881.184344 eV Total energy + Delta-G solvation = -4127.739953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.09987 -40.03312 -38.09271 -36.47506 -35.41554 -34.29825 -32.74419 -31.70998 -31.24828 -30.24087 -27.96355 -27.66880 -27.60334 -26.16113 -24.16046 -23.09981 -22.64482 -21.74788 -20.63305 -19.44805 -18.16726 -17.93560 -16.92749 -16.74988 -16.68426 -16.30084 -15.56149 -15.44160 -15.24056 -14.64879 -14.28787 -14.04697 -13.98378 -13.64647 -13.40124 -13.19027 -13.02512 -12.75668 -12.66437 -12.62003 -12.45509 -12.32499 -12.14528 -12.11675 -12.03179 -11.96446 -11.67279 -11.57691 -11.51143 -11.43665 -11.41854 -10.97578 -10.84272 -10.73135 -10.68359 -10.53470 -10.40107 -10.11338 -10.07405 -9.50216 -9.07216 -8.83397 -8.58759 -7.75596 -6.08212 -4.06326 1.91677 2.76008 3.18032 3.26651 3.35138 3.39088 3.65527 3.80631 4.39855 4.41802 4.46794 4.51062 4.54731 4.65541 4.81925 5.03585 5.15887 5.18248 5.19879 5.25744 5.27796 5.29109 5.34973 5.38381 5.42526 5.51202 5.55902 5.58943 5.61671 5.66503 5.67378 5.73440 5.76351 5.93560 6.04009 6.05576 6.08408 6.10721 6.17956 6.24352 6.26048 6.32770 6.46383 6.64128 6.76192 6.94633 7.32346 7.39421 7.61222 8.20760 8.24930 8.46892 8.90386 8.97178 9.52324 11.05043 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.002659 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.893854 B =10527.703617 C =10840.910559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 N -0.593 5.593 4 C 0.216 3.784 5 C -0.523 4.523 6 H 0.077 0.923 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.526 3.474 14 O -0.530 6.530 15 C -0.126 4.126 16 H 0.105 0.895 17 C -0.117 4.117 18 C 0.105 3.895 19 N -0.599 5.599 20 C 0.670 3.330 21 O -0.566 6.566 22 O -0.363 6.363 23 C 0.136 3.864 24 C -0.184 4.184 25 C -0.140 4.140 26 C -0.183 4.183 27 C 0.174 3.826 28 H 0.083 0.917 29 C -0.168 4.168 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.069 0.931 50 H 0.058 0.942 51 H 0.066 0.934 52 H 0.070 0.930 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.387 -11.132 22.336 25.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.014 4.014 3 N -0.324 5.324 4 C 0.096 3.904 5 C -0.562 4.562 6 H 0.095 0.905 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.312 3.688 14 O -0.406 6.406 15 C -0.148 4.148 16 H 0.123 0.877 17 C -0.155 4.155 18 C -0.018 4.018 19 N -0.340 5.340 20 C 0.425 3.575 21 O -0.455 6.455 22 O -0.277 6.277 23 C 0.099 3.901 24 C -0.241 4.241 25 C -0.197 4.197 26 C -0.240 4.240 27 C 0.072 3.928 28 H 0.101 0.899 29 C -0.226 4.226 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.088 0.912 50 H 0.077 0.923 51 H 0.085 0.915 52 H 0.089 0.911 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.917 -10.598 22.147 25.508 hybrid contribution 0.579 0.011 -0.655 0.875 sum 7.497 -10.587 21.493 25.104 Atomic orbital electron populations 1.22245 0.95933 1.00828 1.03866 1.21449 0.94817 0.83323 1.01820 1.47959 1.63891 1.13213 1.07347 1.19695 0.97522 0.93069 0.80154 1.21320 0.96520 1.32015 1.06296 0.90540 1.24859 0.96208 0.94831 0.97174 1.69889 1.28855 1.34252 1.20668 0.86902 0.84940 0.77865 0.80347 1.20177 1.21026 1.18883 1.19655 0.77954 0.86882 0.84347 1.90683 1.47555 1.15551 1.86817 1.22588 0.97846 0.99643 0.94771 0.87705 1.22769 1.02622 0.98932 0.91155 1.22386 0.85148 0.96090 0.98180 1.47334 1.18470 1.61559 1.06655 1.17423 0.81888 0.77821 0.80355 1.90882 1.29886 1.47166 1.77573 1.86304 1.47304 1.77249 1.16888 1.22057 0.84531 0.94785 0.88733 1.22521 0.96244 1.00546 1.04794 1.21850 1.02823 1.02857 0.92175 1.22513 1.02255 0.93979 1.05243 1.21337 0.94946 0.99687 0.76820 0.89890 1.22261 0.97752 1.01447 1.01121 0.90458 0.92681 0.93037 0.90367 0.91991 0.94288 0.95693 0.92627 0.88532 0.89171 0.89968 0.91044 0.92164 0.91252 0.89280 0.91515 0.90210 0.91471 0.89313 0.91247 0.92256 0.91464 0.91081 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.96 37.16 0.37 -2.10 16 2 C 0.11 1.62 5.79 -4.04 -0.02 1.60 16 3 N -0.59 -11.45 2.46 -175.06 -0.43 -11.88 16 4 C 0.22 5.09 4.23 -5.19 -0.02 5.06 16 5 C -0.52 -14.53 9.90 -34.44 -0.34 -14.87 16 6 H 0.08 2.32 7.89 -52.49 -0.41 1.91 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 9 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.53 9.94 4.58 -10.98 -0.05 9.89 16 14 O -0.53 -12.23 14.87 5.56 0.08 -12.15 16 15 C -0.13 -1.75 2.30 -89.93 -0.21 -1.95 16 16 H 0.10 1.24 5.74 -51.93 -0.30 0.94 16 17 C -0.12 -1.45 6.40 -24.58 -0.16 -1.61 16 18 C 0.10 1.11 6.92 -2.53 -0.02 1.09 16 19 N -0.60 -7.72 3.09 -168.53 -0.52 -8.24 16 20 C 0.67 9.19 7.71 54.06 0.42 9.60 16 21 O -0.57 -8.67 10.87 -19.27 -0.21 -8.88 16 22 O -0.36 -4.37 9.42 -40.32 -0.38 -4.75 16 23 C 0.14 1.32 1.13 -90.61 -0.10 1.21 16 24 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 25 C -0.14 -0.96 8.85 37.16 0.33 -0.63 16 26 C -0.18 -1.69 8.37 37.16 0.31 -1.38 16 27 C 0.17 2.35 3.31 -66.79 -0.22 2.13 16 28 H 0.08 1.04 7.96 -51.93 -0.41 0.63 16 29 C -0.17 -2.60 8.05 37.16 0.30 -2.30 16 30 H 0.08 1.38 7.94 -51.93 -0.41 0.97 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.74 7.38 -51.93 -0.38 0.36 16 33 H 0.08 1.11 7.84 -51.93 -0.41 0.70 16 34 H 0.06 0.73 6.32 -51.93 -0.33 0.40 16 35 H 0.04 1.00 6.56 -51.93 -0.34 0.66 16 36 H 0.03 0.56 7.29 -51.93 -0.38 0.18 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.10 1.43 7.22 -51.93 -0.37 1.05 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.07 1.14 7.90 -51.94 -0.41 0.73 16 52 H 0.07 1.10 6.92 -51.93 -0.36 0.74 16 53 H 0.07 1.20 6.77 -51.93 -0.35 0.84 16 LS Contribution 407.50 15.07 6.14 6.14 Total: -1.00 -33.70 407.50 -7.71 -41.41 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -9.29 Total: 2.07 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 0.80 Total: 6.20 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.18 Total: -46.68 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.51 Total: -25.78 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.70 -7.71 -41.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492668496.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.772 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds