Wall clock time and date at job start Sat Apr 11 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46977 * 2 1 4 4 C 1.46500 * 120.00334 * 265.07276 * 3 2 1 5 5 C 1.50705 * 109.46633 * 89.99858 * 4 3 2 6 6 H 1.07997 * 120.00263 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99622 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00105 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00295 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47432 * 89.99243 * 9 7 5 11 11 H 1.48506 * 109.47047 * 209.99764 * 9 7 5 12 12 H 1.48507 * 109.46759 * 329.99173 * 9 7 5 13 13 C 1.34777 * 120.00036 * 85.07941 * 3 2 1 14 14 O 1.21277 * 120.00529 * 185.31975 * 13 3 2 15 15 C 1.50703 * 120.00009 * 5.31416 * 13 3 2 16 16 H 1.09002 * 110.64241 * 327.80501 * 15 13 3 17 17 C 1.55159 * 110.72466 * 204.65818 * 15 13 3 18 18 C 1.54906 * 101.58161 * 206.13723 * 17 15 13 19 19 N 1.47428 * 104.83553 * 37.00665 * 18 17 15 20 20 C 1.34777 * 125.64737 * 155.89942 * 19 18 17 21 21 O 1.21504 * 119.99930 * 179.97438 * 20 19 18 22 22 O 1.34637 * 119.99931 * 359.97438 * 20 19 18 23 23 C 1.45201 * 116.99900 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.47103 * 59.99353 * 23 22 20 25 25 C 1.53000 * 109.47292 * 179.97438 * 23 22 20 26 26 C 1.53008 * 109.47125 * 299.99927 * 23 22 20 27 27 C 1.47317 * 108.73292 * 335.71643 * 19 18 17 28 28 H 1.08996 * 110.05935 * 241.86593 * 27 19 18 29 29 C 1.53007 * 109.84789 * 120.60814 * 27 19 18 30 30 H 1.08995 * 109.47319 * 65.07623 * 1 2 3 31 31 H 1.09000 * 109.46798 * 185.07658 * 1 2 3 32 32 H 1.08998 * 109.46957 * 305.07104 * 1 2 3 33 33 H 1.09001 * 109.47036 * 240.00132 * 2 1 3 34 34 H 1.09005 * 109.46889 * 120.00392 * 2 1 3 35 35 H 1.08995 * 109.47462 * 210.00044 * 4 3 2 36 36 H 1.08999 * 109.46784 * 330.00875 * 4 3 2 37 37 H 0.97000 * 120.00659 * 180.02562 * 8 7 5 38 38 H 1.09004 * 110.99912 * 324.21190 * 17 15 13 39 39 H 1.08995 * 110.99926 * 88.02344 * 17 15 13 40 40 H 1.09003 * 110.36784 * 155.85030 * 18 17 15 41 41 H 1.09000 * 110.36580 * 278.05669 * 18 17 15 42 42 H 1.09002 * 109.46739 * 60.00579 * 24 23 22 43 43 H 1.09005 * 109.46814 * 180.02562 * 24 23 22 44 44 H 1.08995 * 109.47403 * 300.00184 * 24 23 22 45 45 H 1.08996 * 109.46687 * 59.99931 * 25 23 22 46 46 H 1.09001 * 109.46832 * 180.02562 * 25 23 22 47 47 H 1.08992 * 109.46805 * 299.99640 * 25 23 22 48 48 H 1.09001 * 109.46910 * 59.99643 * 26 23 22 49 49 H 1.08997 * 109.47197 * 179.97438 * 26 23 22 50 50 H 1.09000 * 109.46594 * 299.99977 * 26 23 22 51 51 H 1.08988 * 109.47446 * 306.74019 * 29 27 19 52 52 H 1.09000 * 109.46763 * 66.73962 * 29 27 19 53 53 H 1.08996 * 109.46786 * 186.73097 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3652 2.0356 -1.2640 5 6 1.1494 2.7317 -1.8194 6 1 0.2123 2.6912 -1.2841 7 6 1.2339 3.4213 -3.0103 8 7 0.1731 4.0293 -3.4948 9 14 2.8550 3.4921 -3.9358 10 1 2.9370 2.3480 -4.8788 11 1 2.9365 4.7660 -4.6946 12 1 3.9802 3.4188 -2.9694 13 6 2.1485 2.0500 1.1629 14 8 2.4598 3.2221 1.1569 15 6 1.9072 1.3412 2.4708 16 1 1.1447 0.5709 2.3554 17 6 1.5037 2.3519 3.5767 18 6 1.9673 1.6135 4.8571 19 7 3.2212 0.9406 4.4717 20 6 4.2057 0.5714 5.3148 21 8 5.1994 0.0204 4.8844 22 8 4.0882 0.8133 6.6341 23 6 5.1868 0.3877 7.4827 24 6 6.4713 1.0962 7.0476 25 6 4.8756 0.7450 8.9375 26 6 5.3717 -1.1259 7.3571 27 6 3.2185 0.7344 3.0130 28 1 3.2558 -0.3310 2.7860 29 6 4.4193 1.4455 2.3856 30 1 -0.3634 0.4330 -0.9319 31 1 -0.3633 -1.0237 0.0909 32 1 -0.3633 0.5905 0.8411 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.1547 2.7666 -1.0900 36 1 2.7129 1.2878 -1.9767 37 1 0.2323 4.5141 -4.3328 38 1 2.0351 3.2959 3.4560 39 1 0.4255 2.5113 3.5856 40 1 2.1508 2.3265 5.6608 41 1 1.2206 0.8811 5.1640 42 1 6.3397 2.1745 7.1371 43 1 7.2962 0.7763 7.6844 44 1 6.6933 0.8420 6.0112 45 1 3.9605 0.2406 9.2476 46 1 5.7006 0.4260 9.5744 47 1 4.7443 1.8233 9.0266 48 1 5.5936 -1.3800 6.3206 49 1 6.1967 -1.4453 7.9937 50 1 4.4566 -1.6306 7.6670 51 1 4.4267 2.4898 2.6973 52 1 5.3396 0.9620 2.7133 53 1 4.3470 1.3908 1.2995 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492668496.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:34 Heat of formation + Delta-G solvation = -131.610272 kcal Electronic energy + Delta-G solvation = -32009.853652 eV Core-core repulsion = 27881.184344 eV Total energy + Delta-G solvation = -4128.669308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.14738 -41.24645 -39.26400 -37.50806 -36.96567 -35.14810 -34.77635 -32.92041 -32.33724 -31.71340 -29.69463 -28.33801 -28.26283 -27.44182 -25.31538 -24.47892 -24.15286 -22.80740 -21.84500 -20.36926 -19.49607 -19.05143 -18.98136 -18.02250 -17.57489 -17.39237 -17.08394 -16.68773 -16.24390 -16.00845 -15.60422 -15.21196 -15.00201 -14.77787 -14.66544 -14.48538 -14.36005 -14.18986 -13.81733 -13.71368 -13.57213 -13.43871 -13.28322 -13.08730 -13.03576 -12.99816 -12.87382 -12.82489 -12.69823 -12.48476 -12.42340 -12.39606 -12.21963 -12.04289 -11.94857 -11.87377 -11.74409 -11.60926 -11.36011 -11.04489 -10.78503 -10.62510 -9.84920 -9.39840 -8.30123 -6.32995 0.96975 1.31717 1.36296 1.46078 1.73011 1.75292 2.29352 2.32787 2.84349 3.03930 3.35126 3.43606 3.63983 3.78251 3.82803 3.95149 3.97595 4.09266 4.17430 4.23627 4.29065 4.43408 4.45886 4.50108 4.58596 4.63295 4.64239 4.68067 4.74007 4.79013 4.79210 4.85151 4.86972 4.90858 4.93079 4.98834 4.99181 5.05043 5.10286 5.14436 5.19198 5.24411 5.30972 5.37466 5.47381 5.48986 5.53112 5.70239 6.28507 6.40123 6.68390 6.72641 7.25289 7.26151 7.43878 8.86542 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.002659 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.893854 B =10527.703617 C =10840.910559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.599 5.599 4 C 0.224 3.776 5 C -0.522 4.522 6 H 0.035 0.965 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.941 3.059 10 H -0.253 1.253 11 H -0.286 1.286 12 H -0.257 1.257 13 C 0.520 3.480 14 O -0.582 6.582 15 C -0.115 4.115 16 H 0.137 0.863 17 C -0.116 4.116 18 C 0.112 3.888 19 N -0.602 5.602 20 C 0.666 3.334 21 O -0.587 6.587 22 O -0.364 6.364 23 C 0.124 3.876 24 C -0.181 4.181 25 C -0.134 4.134 26 C -0.178 4.178 27 C 0.179 3.821 28 H 0.104 0.896 29 C -0.158 4.158 30 H 0.032 0.968 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.017 0.983 36 H 0.046 0.954 37 H 0.266 0.734 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.090 0.910 50 H 0.064 0.936 51 H 0.042 0.958 52 H 0.067 0.933 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.033 -13.725 24.563 29.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.330 5.330 4 C 0.101 3.899 5 C -0.560 4.560 6 H 0.054 0.946 7 C -0.188 4.188 8 N -0.587 5.587 9 Si 0.765 3.235 10 H -0.178 1.178 11 H -0.211 1.211 12 H -0.181 1.181 13 C 0.308 3.692 14 O -0.462 6.462 15 C -0.136 4.136 16 H 0.155 0.845 17 C -0.155 4.155 18 C -0.010 4.010 19 N -0.343 5.343 20 C 0.422 3.578 21 O -0.477 6.477 22 O -0.279 6.279 23 C 0.088 3.912 24 C -0.238 4.238 25 C -0.191 4.191 26 C -0.235 4.235 27 C 0.077 3.923 28 H 0.122 0.878 29 C -0.216 4.216 30 H 0.051 0.949 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.121 0.879 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.109 0.891 50 H 0.083 0.917 51 H 0.062 0.938 52 H 0.086 0.914 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.546 -13.238 24.409 28.775 hybrid contribution 0.348 0.841 -1.273 1.565 sum 7.894 -12.397 23.136 27.410 Atomic orbital electron populations 1.22181 0.95751 1.02876 1.01445 1.21822 0.94908 0.80956 1.04375 1.48058 1.63899 1.14945 1.06081 1.19352 0.94845 0.93164 0.82525 1.21537 0.96516 1.32060 1.05916 0.94648 1.25790 1.00044 0.94519 0.98424 1.70043 1.31404 1.35759 1.21502 0.85808 0.80122 0.78467 0.79142 1.17759 1.21143 1.18131 1.20528 0.76402 0.86463 0.85770 1.90657 1.49698 1.18136 1.87742 1.22551 0.98909 1.00278 0.91893 0.84507 1.22767 1.03427 0.97513 0.91749 1.22499 0.84726 0.96682 0.97085 1.47355 1.19140 1.61601 1.06230 1.17558 0.81636 0.77676 0.80951 1.90880 1.30680 1.48100 1.78076 1.86316 1.48323 1.77172 1.16077 1.22440 0.83876 0.95111 0.89780 1.22486 0.97415 1.00458 1.03478 1.21873 1.04077 1.02995 0.90186 1.22457 1.03368 0.93687 1.03964 1.21273 0.93408 1.00288 0.77358 0.87813 1.22123 0.98976 1.00241 1.00233 0.94887 0.88681 0.93083 0.89483 0.87771 0.96524 0.93570 0.92510 0.91606 0.87350 0.89201 0.87897 0.92462 0.88974 0.92189 0.90887 0.87941 0.91496 0.91999 0.89134 0.91661 0.93837 0.91389 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 9.96 71.98 0.72 -3.77 16 2 C 0.10 2.75 5.79 86.38 0.50 3.25 16 3 N -0.60 -22.99 2.46 -826.14 -2.04 -25.03 16 4 C 0.22 10.64 4.23 85.63 0.36 11.00 16 5 C -0.52 -30.01 9.90 25.60 0.25 -29.76 16 6 H 0.04 2.27 7.89 -2.91 -0.02 2.24 16 7 C 0.01 0.57 5.47 84.65 0.46 1.04 16 8 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 9 Si 0.94 44.56 27.47 68.60 1.88 46.44 16 10 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.26 -11.78 6.54 99.48 0.65 -11.13 16 13 C 0.52 19.75 4.58 87.66 0.40 20.15 16 14 O -0.58 -28.07 14.87 -3.02 -0.04 -28.12 16 15 C -0.11 -2.96 2.30 -10.35 -0.02 -2.99 16 16 H 0.14 2.69 5.74 -2.39 -0.01 2.68 16 17 C -0.12 -2.75 6.40 31.99 0.20 -2.54 16 18 C 0.11 2.07 6.92 86.85 0.60 2.67 16 19 N -0.60 -14.39 3.09 -917.51 -2.83 -17.22 16 20 C 0.67 17.42 7.71 129.79 1.00 18.42 16 21 O -0.59 -17.67 10.87 19.83 0.22 -17.46 16 22 O -0.36 -8.15 9.42 -55.46 -0.52 -8.68 16 23 C 0.12 2.16 1.13 -10.79 -0.01 2.15 16 24 C -0.18 -3.35 8.37 71.98 0.60 -2.75 16 25 C -0.13 -1.45 8.85 71.98 0.64 -0.81 16 26 C -0.18 -2.92 8.37 71.98 0.60 -2.32 16 27 C 0.18 4.52 3.31 45.29 0.15 4.67 16 28 H 0.10 2.25 7.96 -2.39 -0.02 2.23 16 29 C -0.16 -4.92 8.05 71.98 0.58 -4.34 16 30 H 0.03 1.18 7.94 -2.39 -0.02 1.16 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.37 7.38 -2.39 -0.02 1.36 16 33 H 0.09 2.24 7.84 -2.39 -0.02 2.22 16 34 H 0.10 1.99 6.32 -2.38 -0.02 1.98 16 35 H 0.02 0.87 6.56 -2.39 -0.02 0.86 16 36 H 0.05 2.01 7.29 -2.39 -0.02 1.99 16 37 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.07 1.99 7.22 -2.38 -0.02 1.98 16 39 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.09 1.57 8.04 -2.39 -0.02 1.55 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.06 1.49 5.88 -2.39 -0.01 1.47 16 45 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 47 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 49 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.04 1.53 7.90 -2.39 -0.02 1.51 16 52 H 0.07 2.13 6.92 -2.39 -0.02 2.11 16 53 H 0.06 1.93 6.77 -2.39 -0.02 1.92 16 Total: -1.00 -79.28 407.50 4.83 -74.45 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.82 Total: 20.87 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 7.04 Total: 14.08 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -4.57 Total: -101.59 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -0.35 Total: -54.25 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -79.28 4.83 -74.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492668496.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.161 kcal (2) G-P(sol) polarization free energy of solvation -79.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds