Wall clock time and date at job start Sat Apr 11 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46999 * 2 1 4 4 C 1.46501 * 120.00034 * 266.35123 * 3 2 1 5 5 C 1.50704 * 109.47114 * 270.00259 * 4 3 2 6 6 H 1.08000 * 119.99920 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00151 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99940 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00079 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47199 * 59.99685 * 9 7 5 11 11 H 1.48492 * 109.47367 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46886 * 299.99787 * 9 7 5 13 13 C 1.34770 * 120.00152 * 86.34813 * 3 2 1 14 14 O 1.21283 * 119.99840 * 4.66061 * 13 3 2 15 15 C 1.50700 * 120.00375 * 184.64923 * 13 3 2 16 16 H 1.09006 * 110.63818 * 32.93225 * 15 13 3 17 17 C 1.55151 * 110.87485 * 269.68361 * 15 13 3 18 18 C 1.55140 * 101.48266 * 205.89407 * 17 15 13 19 19 N 1.47420 * 104.71976 * 37.29716 * 18 17 15 20 20 C 1.34783 * 125.64906 * 155.81972 * 19 18 17 21 21 O 1.21501 * 120.00084 * 179.68936 * 20 19 18 22 22 O 1.34640 * 119.99516 * 359.68853 * 20 19 18 23 23 C 1.45198 * 116.99731 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47523 * 59.99518 * 23 22 20 25 25 C 1.53008 * 109.47036 * 299.99423 * 23 22 20 26 26 C 1.53002 * 109.47248 * 179.97438 * 23 22 20 27 27 C 1.47025 * 108.70654 * 335.55003 * 19 18 17 28 28 H 1.08995 * 109.88107 * 120.70970 * 27 19 18 29 29 C 1.53001 * 109.88161 * 241.72159 * 27 19 18 30 30 H 1.09002 * 109.46837 * 55.81889 * 1 2 3 31 31 H 1.09002 * 109.47009 * 175.81311 * 1 2 3 32 32 H 1.08999 * 109.47312 * 295.81916 * 1 2 3 33 33 H 1.09004 * 109.47266 * 240.00052 * 2 1 3 34 34 H 1.08998 * 109.47188 * 120.00017 * 2 1 3 35 35 H 1.08997 * 109.47162 * 29.99936 * 4 3 2 36 36 H 1.08996 * 109.47434 * 149.99725 * 4 3 2 37 37 H 0.96994 * 119.99573 * 179.97438 * 8 7 5 38 38 H 1.09001 * 111.00718 * 324.12962 * 17 15 13 39 39 H 1.08994 * 111.00719 * 87.94984 * 17 15 13 40 40 H 1.09002 * 110.49607 * 278.45263 * 18 17 15 41 41 H 1.09003 * 110.33798 * 156.05645 * 18 17 15 42 42 H 1.09000 * 109.46880 * 300.00344 * 24 23 22 43 43 H 1.08994 * 109.47138 * 180.02562 * 24 23 22 44 44 H 1.08995 * 109.46890 * 60.00076 * 24 23 22 45 45 H 1.08994 * 109.47290 * 180.02562 * 25 23 22 46 46 H 1.09000 * 109.46933 * 300.00723 * 25 23 22 47 47 H 1.08999 * 109.46411 * 60.00013 * 25 23 22 48 48 H 1.09005 * 109.46714 * 299.99639 * 26 23 22 49 49 H 1.08994 * 109.47303 * 59.99433 * 26 23 22 50 50 H 1.09003 * 109.47362 * 179.97438 * 26 23 22 51 51 H 1.08996 * 109.47678 * 58.54228 * 29 27 19 52 52 H 1.08998 * 109.47004 * 178.54621 * 29 27 19 53 53 H 1.09003 * 109.47130 * 298.54089 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3386 2.0450 -1.2662 5 6 3.7853 1.7999 -1.6099 6 1 4.4043 1.2092 -0.9509 7 6 4.3189 2.3306 -2.7652 8 7 3.5652 3.0503 -3.5674 9 14 6.1122 2.0274 -3.1909 10 1 6.3495 0.5674 -3.3238 11 1 6.4369 2.7000 -4.4743 12 1 6.9759 2.5731 -2.1131 13 6 2.1728 2.0414 1.1648 14 8 1.9891 1.4663 2.2167 15 6 2.5742 3.4939 1.1602 16 1 2.1605 4.0042 0.2903 17 6 4.1183 3.6409 1.2000 18 6 4.2787 5.0387 1.8538 19 7 3.2043 5.1066 2.8609 20 6 3.2064 5.8862 3.9604 21 8 2.2600 5.8650 4.7220 22 8 4.2574 6.6885 4.2146 23 6 4.1915 7.4999 5.4170 24 6 4.0636 6.5898 6.6402 25 6 2.9761 8.4262 5.3412 26 6 5.4657 8.3384 5.5368 27 6 2.1272 4.1880 2.4641 28 1 1.9683 3.4439 3.2445 29 6 0.8362 4.9730 2.2232 30 1 -0.3633 0.5774 -0.8502 31 1 -0.3633 -1.0249 -0.0750 32 1 -0.3634 0.4476 0.9251 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.7044 1.6444 -2.0570 36 1 2.1647 3.1166 -1.1689 37 1 3.9407 3.4240 -4.3799 38 1 4.5691 2.8634 1.8167 39 1 4.5377 3.6310 0.1940 40 1 4.1515 5.8250 1.1097 41 1 5.2540 5.1229 2.3332 42 1 3.1560 5.9921 6.5550 43 1 4.0137 7.1989 7.5426 44 1 4.9294 5.9299 6.6942 45 1 2.9269 9.0356 6.2435 46 1 3.0672 9.0746 4.4697 47 1 2.0686 7.8285 5.2560 48 1 6.3313 7.6781 5.5910 49 1 5.5573 8.9867 4.6655 50 1 5.4161 8.9479 6.4392 51 1 1.0044 5.7201 1.4476 52 1 0.0493 4.2893 1.9046 53 1 0.5349 5.4689 3.1460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492668498.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:41 Heat of formation + Delta-G solvation = -122.130620 kcal Electronic energy + Delta-G solvation = -32101.780691 eV Core-core repulsion = 27973.522452 eV Total energy + Delta-G solvation = -4128.258240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.82621 -39.73838 -38.00864 -36.26431 -35.24554 -34.11582 -32.87740 -31.73098 -31.11059 -30.14837 -27.52632 -27.46494 -27.13194 -26.11900 -23.82836 -23.14145 -22.79882 -21.59076 -20.49571 -19.12703 -18.32262 -17.54970 -16.96858 -16.51986 -16.32316 -16.07717 -15.57910 -15.07246 -14.76785 -14.52490 -14.25991 -14.12926 -13.75323 -13.60678 -13.19697 -13.11453 -12.91678 -12.66444 -12.55338 -12.46552 -12.32442 -12.10039 -11.99264 -11.97504 -11.92100 -11.65924 -11.54980 -11.49136 -11.42849 -11.30981 -11.15934 -11.01487 -10.88463 -10.58257 -10.50228 -10.41227 -10.31462 -10.11666 -9.87365 -9.80584 -9.09256 -8.60107 -8.52553 -7.78432 -6.24731 -4.32079 2.17649 2.99366 3.18950 3.23969 3.25463 3.30662 3.81665 3.99361 4.27592 4.62024 4.65956 4.76689 4.80147 4.91173 5.08369 5.16264 5.32933 5.36696 5.41208 5.48657 5.50496 5.55064 5.55973 5.64146 5.65950 5.68976 5.75804 5.79852 5.81634 5.85539 5.86506 5.88539 5.98042 6.20084 6.23550 6.24049 6.28154 6.35215 6.39316 6.43127 6.48724 6.58821 6.59966 6.61698 6.75661 7.12412 7.48017 7.67585 7.70180 7.99026 8.27264 8.48682 8.72334 8.94016 9.35518 10.81696 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012209 B = 0.003419 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.757889 B = 8186.964990 C = 9708.951650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.591 5.591 4 C 0.235 3.765 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.529 3.471 14 O -0.571 6.571 15 C -0.111 4.111 16 H 0.113 0.887 17 C -0.113 4.113 18 C 0.103 3.897 19 N -0.596 5.596 20 C 0.668 3.332 21 O -0.570 6.570 22 O -0.362 6.362 23 C 0.136 3.864 24 C -0.183 4.183 25 C -0.183 4.183 26 C -0.140 4.140 27 C 0.163 3.837 28 H 0.097 0.903 29 C -0.162 4.162 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.040 0.960 37 H 0.266 0.734 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.057 0.943 52 H 0.066 0.934 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.246 7.831 11.650 14.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.321 5.321 4 C 0.116 3.884 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.316 3.684 14 O -0.452 6.452 15 C -0.132 4.132 16 H 0.131 0.869 17 C -0.151 4.151 18 C -0.019 4.019 19 N -0.337 5.337 20 C 0.424 3.576 21 O -0.460 6.460 22 O -0.277 6.277 23 C 0.099 3.901 24 C -0.240 4.240 25 C -0.240 4.240 26 C -0.197 4.197 27 C 0.061 3.939 28 H 0.115 0.885 29 C -0.220 4.220 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.107 0.893 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.076 0.924 52 H 0.085 0.915 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.113 7.728 12.331 14.553 hybrid contribution 1.054 -0.065 -0.576 1.203 sum 0.941 7.663 11.755 14.064 Atomic orbital electron populations 1.22120 0.96848 1.01324 1.01942 1.21242 0.93338 0.83738 1.02516 1.48213 1.62549 1.13338 1.08008 1.19493 0.96297 0.93320 0.79338 1.21430 0.95455 1.33624 1.07007 0.92055 1.24918 0.98069 0.94782 0.95864 1.69907 1.36116 1.33798 1.12927 0.86626 0.84781 0.78650 0.77862 1.20183 1.21182 1.19927 1.19932 0.76720 0.88182 0.83557 1.90598 1.53702 1.69447 1.31459 1.22296 0.98413 0.94331 0.98204 0.86923 1.22803 0.93344 0.95238 1.03716 1.22486 0.90625 0.98381 0.90410 1.47295 1.22056 1.42291 1.22043 1.17425 0.81138 0.78223 0.80845 1.90857 1.36528 1.70309 1.48326 1.86312 1.42851 1.53166 1.45413 1.22017 0.96744 0.89497 0.81875 1.22515 1.04445 1.00508 0.96578 1.22510 0.99477 0.99748 1.02237 1.21847 0.95733 0.99364 1.02753 1.21464 0.85570 0.90215 0.96608 0.88493 1.22164 0.96688 1.00557 1.02589 0.92546 0.92381 0.92816 0.90346 0.91209 0.94642 0.94207 0.92409 0.90602 0.86750 0.90813 0.90246 0.89256 0.91391 0.92242 0.91395 0.92257 0.89281 0.91515 0.91510 0.90334 0.92422 0.91477 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.22 37.16 0.38 -2.13 16 2 C 0.12 2.04 6.13 -4.04 -0.02 2.02 16 3 N -0.59 -11.77 2.46 -175.06 -0.43 -12.20 16 4 C 0.24 5.17 5.03 -5.19 -0.03 5.14 16 5 C -0.54 -12.83 8.39 -34.44 -0.29 -13.11 16 6 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -23.03 13.29 55.43 0.74 -22.30 16 9 Si 0.89 19.38 29.54 -169.99 -5.02 14.36 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.53 10.49 6.84 -10.99 -0.08 10.42 16 14 O -0.57 -12.49 15.21 5.55 0.08 -12.40 16 15 C -0.11 -1.93 2.11 -89.94 -0.19 -2.12 16 16 H 0.11 1.98 5.87 -51.93 -0.30 1.67 16 17 C -0.11 -1.86 6.49 -24.46 -0.16 -2.02 16 18 C 0.10 1.51 6.93 -2.41 -0.02 1.49 16 19 N -0.60 -9.57 3.06 -168.61 -0.52 -10.09 16 20 C 0.67 10.88 7.72 54.06 0.42 11.30 16 21 O -0.57 -10.03 10.90 -19.27 -0.21 -10.24 16 22 O -0.36 -5.22 9.42 -40.32 -0.38 -5.60 16 23 C 0.14 1.57 1.13 -90.61 -0.10 1.46 16 24 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 25 C -0.18 -2.01 8.37 37.16 0.31 -1.70 16 26 C -0.14 -1.20 8.85 37.16 0.33 -0.87 16 27 C 0.16 2.75 3.00 -66.95 -0.20 2.55 16 28 H 0.10 1.86 6.77 -51.93 -0.35 1.51 16 29 C -0.16 -2.47 9.11 37.16 0.34 -2.13 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 34 H 0.07 1.26 7.47 -51.93 -0.39 0.88 16 35 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 0.89 5.80 -51.93 -0.30 0.59 16 37 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 39 H 0.11 2.03 7.16 -51.93 -0.37 1.66 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 42 H 0.09 1.25 5.88 -51.93 -0.31 0.94 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.20 5.88 -51.93 -0.31 0.90 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 53 H 0.07 1.12 6.87 -51.93 -0.36 0.76 16 LS Contribution 415.22 15.07 6.26 6.26 Total: -1.00 -27.97 415.22 -7.97 -35.94 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -9.40 Total: 6.21 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 0.91 Total: 10.06 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.21 Total: -44.59 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.51 Total: -28.24 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -27.97 -7.97 -35.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492668498.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.187 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds