Wall clock time and date at job start Sat Apr 11 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46999 * 2 1 4 4 C 1.46501 * 120.00034 * 266.35123 * 3 2 1 5 5 C 1.50704 * 109.47114 * 270.00259 * 4 3 2 6 6 H 1.08000 * 119.99920 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00151 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99940 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00079 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47199 * 59.99685 * 9 7 5 11 11 H 1.48492 * 109.47367 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46886 * 299.99787 * 9 7 5 13 13 C 1.34770 * 120.00152 * 86.34813 * 3 2 1 14 14 O 1.21283 * 119.99840 * 4.66061 * 13 3 2 15 15 C 1.50700 * 120.00375 * 184.64923 * 13 3 2 16 16 H 1.09006 * 110.63818 * 32.93225 * 15 13 3 17 17 C 1.55151 * 110.87485 * 269.68361 * 15 13 3 18 18 C 1.55140 * 101.48266 * 205.89407 * 17 15 13 19 19 N 1.47420 * 104.71976 * 37.29716 * 18 17 15 20 20 C 1.34783 * 125.64906 * 155.81972 * 19 18 17 21 21 O 1.21501 * 120.00084 * 179.68936 * 20 19 18 22 22 O 1.34640 * 119.99516 * 359.68853 * 20 19 18 23 23 C 1.45198 * 116.99731 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47523 * 59.99518 * 23 22 20 25 25 C 1.53008 * 109.47036 * 299.99423 * 23 22 20 26 26 C 1.53002 * 109.47248 * 179.97438 * 23 22 20 27 27 C 1.47025 * 108.70654 * 335.55003 * 19 18 17 28 28 H 1.08995 * 109.88107 * 120.70970 * 27 19 18 29 29 C 1.53001 * 109.88161 * 241.72159 * 27 19 18 30 30 H 1.09002 * 109.46837 * 55.81889 * 1 2 3 31 31 H 1.09002 * 109.47009 * 175.81311 * 1 2 3 32 32 H 1.08999 * 109.47312 * 295.81916 * 1 2 3 33 33 H 1.09004 * 109.47266 * 240.00052 * 2 1 3 34 34 H 1.08998 * 109.47188 * 120.00017 * 2 1 3 35 35 H 1.08997 * 109.47162 * 29.99936 * 4 3 2 36 36 H 1.08996 * 109.47434 * 149.99725 * 4 3 2 37 37 H 0.96994 * 119.99573 * 179.97438 * 8 7 5 38 38 H 1.09001 * 111.00718 * 324.12962 * 17 15 13 39 39 H 1.08994 * 111.00719 * 87.94984 * 17 15 13 40 40 H 1.09002 * 110.49607 * 278.45263 * 18 17 15 41 41 H 1.09003 * 110.33798 * 156.05645 * 18 17 15 42 42 H 1.09000 * 109.46880 * 300.00344 * 24 23 22 43 43 H 1.08994 * 109.47138 * 180.02562 * 24 23 22 44 44 H 1.08995 * 109.46890 * 60.00076 * 24 23 22 45 45 H 1.08994 * 109.47290 * 180.02562 * 25 23 22 46 46 H 1.09000 * 109.46933 * 300.00723 * 25 23 22 47 47 H 1.08999 * 109.46411 * 60.00013 * 25 23 22 48 48 H 1.09005 * 109.46714 * 299.99639 * 26 23 22 49 49 H 1.08994 * 109.47303 * 59.99433 * 26 23 22 50 50 H 1.09003 * 109.47362 * 179.97438 * 26 23 22 51 51 H 1.08996 * 109.47678 * 58.54228 * 29 27 19 52 52 H 1.08998 * 109.47004 * 178.54621 * 29 27 19 53 53 H 1.09003 * 109.47130 * 298.54089 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3386 2.0450 -1.2662 5 6 3.7853 1.7999 -1.6099 6 1 4.4043 1.2092 -0.9509 7 6 4.3189 2.3306 -2.7652 8 7 3.5652 3.0503 -3.5674 9 14 6.1122 2.0274 -3.1909 10 1 6.3495 0.5674 -3.3238 11 1 6.4369 2.7000 -4.4743 12 1 6.9759 2.5731 -2.1131 13 6 2.1728 2.0414 1.1648 14 8 1.9891 1.4663 2.2167 15 6 2.5742 3.4939 1.1602 16 1 2.1605 4.0042 0.2903 17 6 4.1183 3.6409 1.2000 18 6 4.2787 5.0387 1.8538 19 7 3.2043 5.1066 2.8609 20 6 3.2064 5.8862 3.9604 21 8 2.2600 5.8650 4.7220 22 8 4.2574 6.6885 4.2146 23 6 4.1915 7.4999 5.4170 24 6 4.0636 6.5898 6.6402 25 6 2.9761 8.4262 5.3412 26 6 5.4657 8.3384 5.5368 27 6 2.1272 4.1880 2.4641 28 1 1.9683 3.4439 3.2445 29 6 0.8362 4.9730 2.2232 30 1 -0.3633 0.5774 -0.8502 31 1 -0.3633 -1.0249 -0.0750 32 1 -0.3634 0.4476 0.9251 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.7044 1.6444 -2.0570 36 1 2.1647 3.1166 -1.1689 37 1 3.9407 3.4240 -4.3799 38 1 4.5691 2.8634 1.8167 39 1 4.5377 3.6310 0.1940 40 1 4.1515 5.8250 1.1097 41 1 5.2540 5.1229 2.3332 42 1 3.1560 5.9921 6.5550 43 1 4.0137 7.1989 7.5426 44 1 4.9294 5.9299 6.6942 45 1 2.9269 9.0356 6.2435 46 1 3.0672 9.0746 4.4697 47 1 2.0686 7.8285 5.2560 48 1 6.3313 7.6781 5.5910 49 1 5.5573 8.9867 4.6655 50 1 5.4161 8.9479 6.4392 51 1 1.0044 5.7201 1.4476 52 1 0.0493 4.2893 1.9046 53 1 0.5349 5.4689 3.1460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492668498.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:40 Heat of formation + Delta-G solvation = -135.795273 kcal Electronic energy + Delta-G solvation = -32102.373235 eV Core-core repulsion = 27973.522452 eV Total energy + Delta-G solvation = -4128.850784 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.07005 -41.16022 -39.33731 -37.49296 -36.91339 -35.13429 -34.67583 -33.12443 -32.40825 -31.58656 -28.92404 -28.34287 -28.26995 -27.45794 -25.11000 -24.91197 -24.19224 -22.85649 -21.72708 -20.27727 -19.85311 -18.94475 -18.34414 -18.31444 -17.50596 -17.31967 -17.14198 -16.41974 -16.20650 -15.86498 -15.66567 -15.27721 -15.06973 -14.68931 -14.52740 -14.42528 -14.28450 -14.17076 -13.96425 -13.55525 -13.47949 -13.30756 -13.16429 -13.08417 -13.03638 -12.90519 -12.84387 -12.83391 -12.64414 -12.63364 -12.56310 -12.39917 -12.23207 -12.10783 -11.90102 -11.86283 -11.73021 -11.59548 -11.36205 -11.04286 -10.74139 -10.46512 -9.81172 -9.46189 -8.14278 -6.26996 1.01045 1.47116 1.49759 1.55355 1.68339 1.74428 2.28149 2.48371 2.85197 3.16791 3.42778 3.54219 3.69582 3.78078 3.82392 3.97092 4.05860 4.15816 4.19196 4.29855 4.32917 4.42243 4.49478 4.53662 4.56423 4.63505 4.64240 4.68758 4.74463 4.78369 4.84668 4.85742 4.89904 4.95598 4.99415 5.04619 5.09109 5.11625 5.14505 5.19175 5.24881 5.26888 5.30714 5.35061 5.37372 5.47234 5.71513 5.88339 6.11865 6.42616 6.58501 6.85801 7.25329 7.29851 7.45475 8.91027 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012209 B = 0.003419 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.757889 B = 8186.964990 C = 9708.951650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.108 3.892 3 N -0.594 5.594 4 C 0.250 3.750 5 C -0.537 4.537 6 H 0.053 0.947 7 C 0.030 3.970 8 N -0.917 5.917 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.265 1.265 13 C 0.526 3.474 14 O -0.593 6.593 15 C -0.106 4.106 16 H 0.114 0.886 17 C -0.107 4.107 18 C 0.111 3.889 19 N -0.601 5.601 20 C 0.666 3.334 21 O -0.588 6.588 22 O -0.365 6.365 23 C 0.122 3.878 24 C -0.180 4.180 25 C -0.178 4.178 26 C -0.134 4.134 27 C 0.170 3.830 28 H 0.070 0.930 29 C -0.153 4.153 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.037 0.963 37 H 0.267 0.733 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.105 0.895 51 H 0.067 0.933 52 H 0.070 0.930 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 8.981 12.087 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 N -0.323 5.323 4 C 0.129 3.871 5 C -0.576 4.576 6 H 0.071 0.929 7 C -0.171 4.171 8 N -0.556 5.556 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.190 1.190 13 C 0.315 3.685 14 O -0.476 6.476 15 C -0.128 4.128 16 H 0.132 0.868 17 C -0.145 4.145 18 C -0.011 4.011 19 N -0.341 5.341 20 C 0.422 3.578 21 O -0.479 6.479 22 O -0.280 6.280 23 C 0.086 3.914 24 C -0.237 4.237 25 C -0.235 4.235 26 C -0.191 4.191 27 C 0.067 3.933 28 H 0.088 0.912 29 C -0.211 4.211 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.112 0.888 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.123 0.877 51 H 0.086 0.914 52 H 0.089 0.911 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.015 8.876 12.777 15.590 hybrid contribution 0.690 -0.453 -0.649 1.050 sum 1.706 8.423 12.128 14.864 Atomic orbital electron populations 1.22022 0.94744 1.03074 1.01293 1.21414 0.95095 0.82620 1.02309 1.48253 1.62551 1.14148 1.07396 1.19191 0.95135 0.93111 0.79641 1.21542 0.96153 1.33092 1.06787 0.92867 1.25492 1.01165 0.94610 0.95803 1.69989 1.37513 1.34739 1.13328 0.85792 0.81116 0.78203 0.77706 1.20419 1.21172 1.19012 1.20279 0.76156 0.89037 0.83076 1.90585 1.54717 1.70215 1.32077 1.22242 0.99166 0.92829 0.98531 0.86798 1.22699 0.92336 0.96402 1.03078 1.22510 0.90969 0.97270 0.90362 1.47312 1.22144 1.42205 1.22468 1.17531 0.81398 0.78351 0.80547 1.90858 1.37348 1.70852 1.48819 1.86326 1.41842 1.52989 1.46815 1.22472 0.98609 0.89522 0.80818 1.22473 1.02791 1.00600 0.97819 1.22461 0.97906 0.99481 1.03680 1.21874 0.93885 0.99098 1.04211 1.21261 0.86662 0.90087 0.95262 0.91173 1.22077 0.95951 1.00548 1.02514 0.92689 0.89525 0.93772 0.90170 0.91707 0.96095 0.94541 0.92409 0.91524 0.87804 0.89396 0.88664 0.92293 0.88742 0.92283 0.88838 0.91984 0.92119 0.91380 0.91180 0.87694 0.91372 0.91103 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 10.22 71.98 0.74 -3.83 16 2 C 0.11 3.84 6.13 86.38 0.53 4.36 16 3 N -0.59 -23.81 2.46 -826.15 -2.03 -25.85 16 4 C 0.25 11.02 5.03 85.63 0.43 11.45 16 5 C -0.54 -25.59 8.39 25.60 0.21 -25.37 16 6 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 7 C 0.03 1.47 5.46 84.65 0.46 1.93 16 8 N -0.92 -47.17 13.29 21.45 0.28 -46.88 16 9 Si 0.95 39.10 29.54 68.60 2.03 41.13 16 10 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 13 C 0.53 21.14 6.84 87.66 0.60 21.74 16 14 O -0.59 -26.42 15.21 -3.04 -0.05 -26.47 16 15 C -0.11 -3.72 2.11 -10.35 -0.02 -3.75 16 16 H 0.11 3.99 5.87 -2.38 -0.01 3.97 16 17 C -0.11 -3.51 6.49 32.06 0.21 -3.30 16 18 C 0.11 3.10 6.93 86.94 0.60 3.71 16 19 N -0.60 -19.10 3.06 -917.76 -2.81 -21.91 16 20 C 0.67 21.54 7.72 129.79 1.00 22.54 16 21 O -0.59 -20.99 10.90 19.84 0.22 -20.77 16 22 O -0.36 -10.11 9.42 -55.49 -0.52 -10.63 16 23 C 0.12 2.61 1.13 -10.79 -0.01 2.60 16 24 C -0.18 -3.85 8.37 71.98 0.60 -3.25 16 25 C -0.18 -3.66 8.37 71.98 0.60 -3.06 16 26 C -0.13 -1.91 8.85 71.98 0.64 -1.28 16 27 C 0.17 5.78 3.00 45.34 0.14 5.91 16 28 H 0.07 2.79 6.77 -2.39 -0.02 2.77 16 29 C -0.15 -4.67 9.11 71.98 0.66 -4.01 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 2.78 8.04 -2.38 -0.02 2.76 16 34 H 0.06 2.35 7.47 -2.39 -0.02 2.34 16 35 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 36 H 0.04 1.65 5.80 -2.39 -0.01 1.63 16 37 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 38 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 39 H 0.10 3.66 7.16 -2.39 -0.02 3.64 16 40 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.10 2.38 8.04 -2.39 -0.02 2.36 16 42 H 0.06 1.65 5.88 -2.39 -0.01 1.63 16 43 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 1.62 5.88 -2.39 -0.01 1.61 16 48 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 49 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 50 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 52 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 53 H 0.06 2.03 6.87 -2.39 -0.02 2.01 16 Total: -1.00 -59.82 415.22 5.37 -54.45 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.87 Total: 30.55 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 7.38 Total: 26.39 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -4.56 Total: -94.64 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: -0.35 Total: -57.88 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -59.82 5.37 -54.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492668498.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.345 kcal (2) G-P(sol) polarization free energy of solvation -59.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds