Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47177 * 2 1 4 4 C 1.46497 * 120.00122 * 264.75910 * 3 2 1 5 5 C 1.50698 * 109.46899 * 276.49757 * 4 3 2 6 6 H 1.08002 * 120.00273 * 359.97438 * 5 4 3 7 7 C 1.37888 * 120.00121 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99656 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00077 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47232 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47122 * 119.99773 * 9 7 5 12 12 H 1.48500 * 109.46966 * 239.99833 * 9 7 5 13 13 C 1.34778 * 119.99872 * 84.75264 * 3 2 1 14 14 O 1.21276 * 120.00082 * 4.82302 * 13 3 2 15 15 C 1.50705 * 119.99742 * 184.82455 * 13 3 2 16 16 H 1.08991 * 109.47123 * 305.57028 * 15 13 3 17 17 C 1.52997 * 109.47050 * 65.57482 * 15 13 3 18 18 C 1.52999 * 109.47018 * 185.57357 * 15 13 3 19 19 C 1.53495 * 114.20739 * 59.99605 * 18 15 13 20 20 N 1.47070 * 87.98456 * 139.65370 * 19 18 15 21 21 C 1.34775 * 136.05482 * 152.83773 * 20 19 18 22 22 O 1.21511 * 120.00097 * 0.02562 * 21 20 19 23 23 O 1.34635 * 120.00033 * 180.02562 * 21 20 19 24 24 C 1.45201 * 117.00189 * 180.02562 * 23 21 20 25 25 C 1.53001 * 109.47466 * 59.99767 * 24 23 21 26 26 C 1.53006 * 109.47063 * 180.02562 * 24 23 21 27 27 C 1.53000 * 109.46643 * 299.99537 * 24 23 21 28 28 C 1.47065 * 87.88642 * 333.10465 * 20 19 18 29 29 H 1.08995 * 109.47037 * 299.99653 * 1 2 3 30 30 H 1.08997 * 109.47323 * 60.00518 * 1 2 3 31 31 H 1.09008 * 109.46369 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47302 * 240.00409 * 2 1 3 33 33 H 1.08998 * 109.47539 * 120.00232 * 2 1 3 34 34 H 1.09002 * 109.47145 * 36.49466 * 4 3 2 35 35 H 1.09004 * 109.47363 * 156.49524 * 4 3 2 36 36 H 0.97001 * 119.99593 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.47243 * 189.97722 * 17 15 13 38 38 H 1.08998 * 109.47152 * 309.97792 * 17 15 13 39 39 H 1.08997 * 109.47166 * 69.97849 * 17 15 13 40 40 H 1.09000 * 113.41224 * 286.80420 * 18 15 13 41 41 H 1.09008 * 113.46659 * 24.87815 * 19 18 15 42 42 H 1.08997 * 113.52630 * 254.44952 * 19 18 15 43 43 H 1.08999 * 109.46685 * 59.99946 * 25 24 23 44 44 H 1.08994 * 109.46805 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.46697 * 300.00298 * 25 24 23 46 46 H 1.08994 * 109.47001 * 59.99435 * 26 24 23 47 47 H 1.09000 * 109.46862 * 179.97438 * 26 24 23 48 48 H 1.08995 * 109.46947 * 299.99460 * 26 24 23 49 49 H 1.08998 * 109.47320 * 60.00451 * 27 24 23 50 50 H 1.09002 * 109.47263 * 180.02562 * 27 24 23 51 51 H 1.09003 * 109.47583 * 300.00005 * 27 24 23 52 52 H 1.09003 * 113.46590 * 141.67435 * 28 20 19 53 53 H 1.08993 * 113.46740 * 272.11542 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3718 2.0332 -1.2634 5 6 3.7788 1.6544 -1.6476 6 1 4.3526 0.9944 -1.0139 7 6 4.3342 2.1513 -2.8078 8 7 3.6357 2.9554 -3.5792 9 14 6.0780 1.6812 -3.2845 10 1 6.6439 0.7711 -2.2565 11 1 6.0632 0.9938 -4.6007 12 1 6.9136 2.9055 -3.3748 13 6 2.1423 2.0521 1.1623 14 8 1.9338 1.4861 2.2144 15 6 2.5401 3.5057 1.1546 16 1 3.4688 3.6252 0.5968 17 6 1.4369 4.3328 0.4915 18 6 2.7434 3.9865 2.5928 19 6 3.8319 3.2259 3.3627 20 7 4.2517 4.5129 3.9374 21 6 4.8572 4.9179 5.0714 22 8 5.1884 4.1016 5.9083 23 8 5.0953 6.2270 5.2768 24 6 5.7515 6.5906 6.5200 25 6 7.1186 5.9077 6.5939 26 6 5.9354 8.1086 6.5746 27 6 4.8911 6.1388 7.7018 28 6 3.7138 5.1641 2.7335 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6827 1.7107 -2.0439 35 1 2.3061 3.1148 -1.1450 36 1 4.0262 3.3047 -4.3956 37 1 1.7946 5.3489 0.3253 38 1 1.1685 3.8813 -0.4636 39 1 0.5615 4.3575 1.1404 40 1 1.8111 4.1115 3.1435 41 1 4.5843 2.7729 2.7169 42 1 3.4360 2.5290 4.1014 43 1 7.7314 6.2296 5.7519 44 1 7.6109 6.1803 7.5273 45 1 6.9871 4.8264 6.5551 46 1 4.9613 8.5947 6.5222 47 1 6.4276 8.3815 7.5081 48 1 6.5481 8.4308 5.7327 49 1 4.7596 5.0575 7.6631 50 1 5.3834 6.4121 8.6351 51 1 3.9171 6.6254 7.6492 52 1 3.2167 6.1123 2.9382 53 1 4.4343 5.2326 1.9185 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495487219.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = -98.417220 kcal Electronic energy + Delta-G solvation = -31307.407245 eV Core-core repulsion = 27180.177295 eV Total energy + Delta-G solvation = -4127.229950 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.11668 -41.23929 -39.96251 -37.69532 -36.83304 -35.20073 -34.77122 -34.43572 -31.74401 -29.93080 -28.86315 -28.38733 -28.30478 -27.13709 -25.74869 -24.79112 -24.39256 -22.70436 -21.54220 -20.30764 -19.71216 -18.79439 -18.55304 -17.92794 -17.61250 -17.55315 -17.00264 -16.44614 -16.17190 -16.10660 -15.69713 -15.36354 -15.15876 -14.96865 -14.66695 -14.36035 -14.12516 -13.95932 -13.64132 -13.52675 -13.51193 -13.34460 -13.19215 -13.11846 -12.94591 -12.91922 -12.88076 -12.85695 -12.64558 -12.58947 -12.47405 -12.40566 -12.19747 -12.07562 -11.90138 -11.71890 -11.64911 -11.43459 -11.42038 -11.11492 -10.61778 -10.33075 -9.90363 -9.37130 -8.16534 -6.29132 0.91023 1.40420 1.45614 1.54139 1.69432 1.86561 2.34355 2.47646 2.77638 3.13745 3.25174 3.73732 3.76219 3.80368 3.82097 3.93311 3.99744 4.16554 4.21329 4.36290 4.42838 4.46702 4.48084 4.56295 4.59452 4.59635 4.60078 4.61920 4.70771 4.74495 4.80985 4.86598 4.87609 4.89426 4.95931 5.01518 5.08625 5.11332 5.14417 5.22564 5.26045 5.27614 5.32023 5.35513 5.44926 5.48822 5.72733 5.93817 6.13306 6.61120 6.67350 6.89438 7.18639 7.36901 7.49155 8.88314 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.002893 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.012380 B = 9675.123641 C =10924.540105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.109 3.891 3 N -0.599 5.599 4 C 0.237 3.763 5 C -0.546 4.546 6 H 0.046 0.954 7 C 0.028 3.972 8 N -0.914 5.914 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.514 3.486 14 O -0.590 6.590 15 C -0.090 4.090 16 H 0.100 0.900 17 C -0.141 4.141 18 C -0.082 4.082 19 C 0.139 3.861 20 N -0.641 5.641 21 C 0.673 3.327 22 O -0.598 6.598 23 O -0.364 6.364 24 C 0.120 3.880 25 C -0.180 4.180 26 C -0.133 4.133 27 C -0.179 4.179 28 C 0.117 3.883 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.014 0.986 35 H 0.064 0.936 36 H 0.267 0.733 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.105 0.895 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.094 0.906 51 H 0.063 0.937 52 H 0.106 0.894 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 10.433 13.653 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 N -0.329 5.329 4 C 0.117 3.883 5 C -0.585 4.585 6 H 0.065 0.935 7 C -0.173 4.173 8 N -0.553 5.553 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.202 1.202 13 C 0.304 3.696 14 O -0.472 6.472 15 C -0.112 4.112 16 H 0.118 0.882 17 C -0.198 4.198 18 C -0.102 4.102 19 C 0.018 3.982 20 N -0.383 5.383 21 C 0.430 3.570 22 O -0.490 6.490 23 O -0.278 6.278 24 C 0.084 3.916 25 C -0.237 4.237 26 C -0.190 4.190 27 C -0.236 4.236 28 C -0.004 4.004 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.124 0.876 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.113 0.887 51 H 0.082 0.918 52 H 0.124 0.876 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.372 10.123 14.513 17.698 hybrid contribution 1.142 -0.883 -0.655 1.585 sum 0.770 9.240 13.858 16.673 Atomic orbital electron populations 1.21988 0.94746 1.02784 1.01330 1.21332 0.95059 0.83184 1.01820 1.48249 1.62836 1.13834 1.07980 1.19471 0.93926 0.94985 0.79932 1.21723 1.00061 1.29524 1.07163 0.93526 1.25497 1.00898 0.94844 0.96055 1.69984 1.38271 1.32883 1.14168 0.85676 0.80848 0.78192 0.77950 1.20145 1.20638 1.20214 1.20873 0.76262 0.89678 0.82817 1.90584 1.53932 1.71045 1.31642 1.21139 1.02492 0.91205 0.96332 0.88153 1.21890 0.96983 1.00486 1.00484 1.22579 0.97884 0.95559 0.94168 1.22968 0.94727 0.85975 0.94564 1.48399 1.60275 1.13032 1.16619 1.17470 0.76465 0.81729 0.81290 1.90874 1.57610 1.55081 1.45466 1.86323 1.74298 1.23264 1.43935 1.22507 0.91780 0.97344 0.79931 1.22476 0.95631 1.01841 1.03788 1.21872 1.03666 0.89023 1.04401 1.22470 1.00265 1.02672 0.98190 1.23221 0.94147 0.98043 0.85033 0.93545 0.92755 0.89956 0.90893 0.92010 0.96770 0.91798 0.92346 0.89301 0.92111 0.91328 0.86733 0.90398 0.91410 0.92100 0.88623 0.92582 0.91023 0.87636 0.91287 0.92540 0.88697 0.91807 0.87553 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 10.20 71.98 0.73 -3.74 16 2 C 0.11 3.91 6.13 86.38 0.53 4.44 16 3 N -0.60 -23.66 2.47 -826.16 -2.04 -25.70 16 4 C 0.24 10.48 4.42 85.63 0.38 10.85 16 5 C -0.55 -27.14 9.37 25.60 0.24 -26.90 16 6 H 0.05 2.41 7.81 -2.91 -0.02 2.39 16 7 C 0.03 1.40 5.46 84.66 0.46 1.86 16 8 N -0.91 -47.59 13.29 21.45 0.28 -47.30 16 9 Si 0.95 40.69 29.54 68.60 2.03 42.71 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 13 C 0.51 19.33 6.71 87.66 0.59 19.91 16 14 O -0.59 -24.21 14.74 -3.02 -0.04 -24.26 16 15 C -0.09 -2.74 1.71 -11.54 -0.02 -2.76 16 16 H 0.10 3.32 7.48 -2.39 -0.02 3.30 16 17 C -0.14 -3.70 8.67 71.98 0.62 -3.07 16 18 C -0.08 -2.21 2.98 -10.55 -0.03 -2.24 16 19 C 0.14 4.41 6.89 83.18 0.57 4.98 16 20 N -0.64 -19.30 3.69 -989.34 -3.65 -22.96 16 21 C 0.67 21.89 8.26 129.79 1.07 22.96 16 22 O -0.60 -22.40 12.66 19.81 0.25 -22.15 16 23 O -0.36 -9.95 9.91 -55.45 -0.55 -10.50 16 24 C 0.12 2.56 1.13 -10.79 -0.01 2.55 16 25 C -0.18 -3.86 8.37 71.98 0.60 -3.25 16 26 C -0.13 -1.80 8.85 71.98 0.64 -1.16 16 27 C -0.18 -3.70 8.37 71.98 0.60 -3.10 16 28 C 0.12 2.74 8.21 83.10 0.68 3.42 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.07 2.65 8.03 -2.39 -0.02 2.63 16 33 H 0.06 2.27 7.52 -2.39 -0.02 2.25 16 34 H 0.01 0.68 8.12 -2.39 -0.02 0.66 16 35 H 0.06 2.75 4.12 -2.39 -0.01 2.74 16 36 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 37 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.06 1.87 5.42 -2.39 -0.01 1.86 16 39 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 40 H 0.11 2.94 8.12 -2.39 -0.02 2.93 16 41 H 0.08 2.58 8.10 -2.38 -0.02 2.56 16 42 H 0.07 2.39 8.05 -2.39 -0.02 2.37 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.06 1.59 5.88 -2.39 -0.01 1.57 16 46 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 50 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 53 H 0.10 2.20 7.94 -2.39 -0.02 2.18 16 Total: -1.00 -63.69 419.95 4.81 -58.88 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.87 Total: 26.53 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 7.66 Total: 24.75 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -5.41 Total: -95.96 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -0.34 Total: -56.91 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -63.69 4.81 -58.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495487219.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.536 kcal (2) G-P(sol) polarization free energy of solvation -63.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds