Wall clock time and date at job start Sat Apr 11 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46688 * 2 1 4 4 C 1.46506 * 119.99990 * 268.18218 * 3 2 1 5 5 C 1.50694 * 109.47060 * 266.87950 * 4 3 2 6 6 H 1.08003 * 120.00331 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99999 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99857 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00227 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47234 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47388 * 119.99636 * 9 7 5 12 12 H 1.48510 * 109.47016 * 239.99787 * 9 7 5 13 13 C 1.34778 * 119.99758 * 88.18770 * 3 2 1 14 14 O 1.21278 * 120.00281 * 4.55555 * 13 3 2 15 15 C 1.50710 * 119.99732 * 184.55497 * 13 3 2 16 16 H 1.09000 * 109.46971 * 32.37029 * 15 13 3 17 17 N 1.46498 * 109.47166 * 152.37341 * 15 13 3 18 18 C 1.34770 * 120.00187 * 204.99912 * 17 15 13 19 19 O 1.21511 * 119.99834 * 0.02562 * 18 17 15 20 20 O 1.34638 * 120.00004 * 180.02562 * 18 17 15 21 21 C 1.45199 * 116.99772 * 180.02562 * 20 18 17 22 22 C 1.52995 * 109.47529 * 59.99816 * 21 20 18 23 23 C 1.52997 * 109.46899 * 180.02562 * 21 20 18 24 24 C 1.53003 * 109.47039 * 299.99838 * 21 20 18 25 25 C 1.52998 * 109.47066 * 272.37685 * 15 13 3 26 26 C 1.53779 * 113.61738 * 181.07392 * 25 15 13 27 27 C 1.53775 * 87.08605 * 139.97544 * 26 25 15 28 28 C 1.53782 * 87.17300 * 334.52689 * 27 26 25 29 29 H 1.09002 * 109.47349 * 64.84721 * 1 2 3 30 30 H 1.09001 * 109.46875 * 184.84819 * 1 2 3 31 31 H 1.09007 * 109.47573 * 304.84692 * 1 2 3 32 32 H 1.08993 * 109.46924 * 240.00327 * 2 1 3 33 33 H 1.08997 * 109.47136 * 120.00157 * 2 1 3 34 34 H 1.08997 * 109.46881 * 26.88279 * 4 3 2 35 35 H 1.09002 * 109.46614 * 146.88085 * 4 3 2 36 36 H 0.97002 * 119.99871 * 179.97438 * 8 7 5 37 37 H 0.97004 * 119.99286 * 24.99822 * 17 15 13 38 38 H 1.08997 * 109.47332 * 59.99668 * 22 21 20 39 39 H 1.08999 * 109.47396 * 180.02562 * 22 21 20 40 40 H 1.09009 * 109.47171 * 300.00178 * 22 21 20 41 41 H 1.08997 * 109.47571 * 60.00087 * 23 21 20 42 42 H 1.09002 * 109.47248 * 179.97438 * 23 21 20 43 43 H 1.09001 * 109.47096 * 299.99544 * 23 21 20 44 44 H 1.08999 * 109.47514 * 60.00113 * 24 21 20 45 45 H 1.08993 * 109.47199 * 180.02562 * 24 21 20 46 46 H 1.09004 * 109.47059 * 300.00127 * 24 21 20 47 47 H 1.09000 * 112.85515 * 49.87331 * 25 15 13 48 48 H 1.09009 * 113.61114 * 25.42710 * 26 25 15 49 49 H 1.09000 * 113.61662 * 254.53082 * 26 25 15 50 50 H 1.09005 * 113.61175 * 89.11566 * 27 26 25 51 51 H 1.08995 * 113.61788 * 219.93888 * 27 26 25 52 52 H 1.08999 * 113.61590 * 140.01969 * 28 27 26 53 53 H 1.08999 * 113.61384 * 270.92327 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3003 2.0585 -1.2681 5 6 3.7551 1.8817 -1.6193 6 1 4.4046 1.3206 -0.9637 7 6 4.2570 2.4362 -2.7775 8 7 3.4660 3.1191 -3.5762 9 14 6.0601 2.2165 -3.2132 10 1 6.7299 1.4135 -2.1588 11 1 6.1724 1.5144 -4.5169 12 1 6.7117 3.5475 -3.3100 13 6 2.2080 2.0289 1.1667 14 8 2.0542 1.4431 2.2174 15 6 2.6113 3.4810 1.1654 16 1 2.1714 3.9795 0.3017 17 7 2.1348 4.1212 2.3939 18 6 1.9146 5.4506 2.4194 19 8 2.1109 6.1180 1.4232 20 8 1.4772 6.0390 3.5486 21 6 1.2611 7.4741 3.5030 22 6 0.2121 7.7984 2.4375 23 6 0.7692 7.9593 4.8680 24 6 2.5750 8.1769 3.1556 25 6 4.1359 3.5868 1.0934 26 6 4.6547 5.0343 1.1130 27 6 5.7826 4.5346 2.0311 28 6 4.8324 3.4023 2.4552 29 1 -0.3634 0.4368 -0.9302 30 1 -0.3633 -1.0240 0.0869 31 1 -0.3634 0.5872 0.8434 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6815 1.6279 -2.0554 35 1 2.0766 3.1208 -1.1702 36 1 3.8192 3.5095 -4.3909 37 1 1.9778 3.5882 3.1891 38 1 -0.7239 7.2977 2.6849 39 1 0.0503 8.8757 2.4030 40 1 0.5630 7.4526 1.4651 41 1 1.5168 7.7285 5.6268 42 1 0.6074 9.0367 4.8340 43 1 -0.1668 7.4587 5.1160 44 1 2.9260 7.8312 2.1832 45 1 2.4129 9.2541 3.1218 46 1 3.3224 7.9459 3.9147 47 1 4.5652 2.9799 0.2962 48 1 3.9751 5.7351 1.5981 49 1 5.0050 5.3858 0.1426 50 1 6.6632 4.1864 1.4911 51 1 6.0267 5.2250 2.8384 52 1 5.3261 2.4370 2.5674 53 1 4.2014 3.6576 3.3064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496040842.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:13 Heat of formation + Delta-G solvation = -97.008131 kcal Electronic energy + Delta-G solvation = -32994.947184 eV Core-core repulsion = 28867.778337 eV Total energy + Delta-G solvation = -4127.168847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.95919 -39.65649 -38.03692 -36.65310 -35.37803 -34.31366 -33.55023 -32.80749 -30.83025 -28.26113 -27.46311 -27.38235 -27.06697 -25.09115 -23.85625 -23.09295 -22.91584 -21.40629 -19.98624 -18.72930 -18.70185 -17.92109 -16.65970 -16.49594 -16.21602 -16.02814 -15.86157 -15.17030 -14.81852 -14.53525 -14.42581 -14.33879 -14.17442 -13.50935 -13.35192 -13.04791 -12.78123 -12.56488 -12.42486 -12.31537 -12.14018 -12.05054 -11.95759 -11.86798 -11.71651 -11.63611 -11.48769 -11.35196 -11.27413 -11.15515 -10.97481 -10.84277 -10.53365 -10.38139 -10.30812 -10.12760 -9.93678 -9.81061 -9.74617 -9.64778 -9.08740 -8.65474 -8.56585 -7.81965 -6.21279 -4.28333 2.28251 3.04869 3.20449 3.23607 3.30200 3.33805 3.81218 4.30345 4.40860 4.69033 4.72833 4.87718 5.02360 5.10595 5.16496 5.25527 5.29347 5.39081 5.47581 5.48459 5.57843 5.62561 5.63338 5.70953 5.74843 5.82833 5.84576 5.89334 5.91911 5.99022 6.14761 6.20654 6.20917 6.27492 6.30538 6.34362 6.35936 6.43983 6.56005 6.58062 6.63320 6.69082 6.73335 6.84921 7.13816 7.17452 7.44291 7.71389 7.73076 8.00096 8.20115 8.63070 8.71933 8.86848 9.38551 10.85483 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.004291 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.285598 B = 6523.936127 C = 7539.673837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.588 5.588 4 C 0.232 3.768 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.891 3.109 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.519 3.481 14 O -0.571 6.571 15 C 0.160 3.840 16 H 0.120 0.880 17 N -0.691 5.691 18 C 0.651 3.349 19 O -0.557 6.557 20 O -0.367 6.367 21 C 0.137 3.863 22 C -0.184 4.184 23 C -0.140 4.140 24 C -0.184 4.184 25 C -0.115 4.115 26 C -0.139 4.139 27 C -0.144 4.144 28 C -0.133 4.133 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.265 0.735 37 H 0.410 0.590 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.133 0.867 48 H 0.097 0.903 49 H 0.065 0.935 50 H 0.075 0.925 51 H 0.056 0.944 52 H 0.061 0.939 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 6.205 12.132 14.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.318 5.318 4 C 0.112 3.888 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.718 3.282 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.207 1.207 13 C 0.306 3.694 14 O -0.452 6.452 15 C 0.054 3.946 16 H 0.137 0.863 17 N -0.351 5.351 18 C 0.404 3.596 19 O -0.447 6.447 20 O -0.282 6.282 21 C 0.100 3.900 22 C -0.242 4.242 23 C -0.197 4.197 24 C -0.242 4.242 25 C -0.134 4.134 26 C -0.176 4.176 27 C -0.181 4.181 28 C -0.170 4.170 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.246 0.754 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.150 0.850 48 H 0.115 0.885 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.075 0.925 52 H 0.080 0.920 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.732 6.387 11.994 14.091 hybrid contribution 0.931 -0.263 -0.238 0.996 sum -2.801 6.124 11.756 13.548 Atomic orbital electron populations 1.22119 0.96762 1.01329 1.01951 1.21273 0.93376 0.83513 1.02701 1.48205 1.62361 1.13513 1.07696 1.19569 0.96849 0.93148 0.79204 1.21425 0.94321 1.34943 1.06992 0.91814 1.24901 0.97966 0.94625 0.95883 1.69926 1.35387 1.34054 1.12826 0.86545 0.84914 0.78176 0.78555 1.19553 1.20857 1.20668 1.20217 0.76832 0.88493 0.83908 1.90581 1.54317 1.68752 1.31526 1.20710 0.96383 0.90850 0.86650 0.86287 1.44547 1.69515 1.04782 1.16207 1.17927 0.76655 0.83142 0.81840 1.90904 1.56367 1.62900 1.34492 1.86295 1.79830 1.25329 1.36756 1.22005 0.96021 0.75251 0.96719 1.22527 0.98246 1.02174 1.01208 1.21849 1.02044 1.01163 0.94649 1.22536 0.96343 1.00657 1.04618 1.23199 0.91567 0.99310 0.99344 1.23222 0.97527 0.96668 1.00149 1.22788 0.97443 0.98388 0.99498 1.22927 0.98177 0.98446 0.97486 0.92545 0.92308 0.92885 0.90224 0.90978 0.94298 0.94172 0.92476 0.75382 0.92315 0.91379 0.88985 0.91592 0.90341 0.91586 0.88964 0.91388 0.92298 0.84986 0.88511 0.91616 0.90661 0.92475 0.92027 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.23 37.16 0.38 -2.11 16 2 C 0.11 2.02 6.13 -4.04 -0.02 2.00 16 3 N -0.59 -11.88 2.46 -175.06 -0.43 -12.31 16 4 C 0.23 5.29 4.97 -5.19 -0.03 5.27 16 5 C -0.54 -13.24 7.28 -34.44 -0.25 -13.49 16 6 H 0.06 1.60 7.39 -52.48 -0.39 1.21 16 7 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 8 N -0.88 -23.77 13.29 55.43 0.74 -23.04 16 9 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 13 C 0.52 10.40 6.82 -10.98 -0.07 10.32 16 14 O -0.57 -11.94 15.64 5.56 0.09 -11.85 16 15 C 0.16 3.03 1.91 -69.08 -0.13 2.90 16 16 H 0.12 2.51 5.51 -51.93 -0.29 2.22 16 17 N -0.69 -11.56 3.61 -59.86 -0.22 -11.78 16 18 C 0.65 10.75 6.79 54.05 0.37 11.12 16 19 O -0.56 -10.13 9.10 -19.28 -0.18 -10.30 16 20 O -0.37 -5.33 9.94 -40.32 -0.40 -5.73 16 21 C 0.14 1.64 1.13 -90.62 -0.10 1.53 16 22 C -0.18 -2.20 8.37 37.16 0.31 -1.89 16 23 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 24 C -0.18 -2.16 8.37 37.16 0.31 -1.85 16 25 C -0.11 -2.15 3.49 -89.66 -0.31 -2.46 16 26 C -0.14 -2.46 7.19 -25.92 -0.19 -2.65 16 27 C -0.14 -2.24 8.07 -25.92 -0.21 -2.45 16 28 C -0.13 -2.20 7.48 -25.77 -0.19 -2.39 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.37 8.06 -51.93 -0.42 0.96 16 33 H 0.07 1.28 7.42 -51.93 -0.39 0.89 16 34 H 0.04 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.04 0.98 5.89 -51.93 -0.31 0.67 16 36 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.41 6.58 7.75 -40.82 -0.32 6.26 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.35 5.88 -51.92 -0.31 1.05 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.13 2.81 5.42 -51.93 -0.28 2.53 16 48 H 0.10 1.73 4.12 -51.92 -0.21 1.52 16 49 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 50 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 53 H 0.08 1.22 6.80 -51.93 -0.35 0.87 16 LS Contribution 407.89 15.07 6.15 6.15 Total: -1.00 -27.28 407.89 -8.22 -35.50 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -9.03 Total: 13.70 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 0.09 Total: 4.63 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.09 Total: -47.13 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.49 Total: -27.89 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -27.28 -8.22 -35.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496040842.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.508 kcal (2) G-P(sol) polarization free energy of solvation -27.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds