Wall clock time and date at job start Sat Apr 11 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46688 * 2 1 4 4 C 1.46506 * 119.99990 * 268.18218 * 3 2 1 5 5 C 1.50694 * 109.47060 * 266.87950 * 4 3 2 6 6 H 1.08003 * 120.00331 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99999 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99857 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00227 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47234 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47388 * 119.99636 * 9 7 5 12 12 H 1.48510 * 109.47016 * 239.99787 * 9 7 5 13 13 C 1.34778 * 119.99758 * 88.18770 * 3 2 1 14 14 O 1.21278 * 120.00281 * 4.55555 * 13 3 2 15 15 C 1.50710 * 119.99732 * 184.55497 * 13 3 2 16 16 H 1.09000 * 109.46971 * 32.37029 * 15 13 3 17 17 N 1.46498 * 109.47166 * 152.37341 * 15 13 3 18 18 C 1.34770 * 120.00187 * 204.99912 * 17 15 13 19 19 O 1.21511 * 119.99834 * 0.02562 * 18 17 15 20 20 O 1.34638 * 120.00004 * 180.02562 * 18 17 15 21 21 C 1.45199 * 116.99772 * 180.02562 * 20 18 17 22 22 C 1.52995 * 109.47529 * 59.99816 * 21 20 18 23 23 C 1.52997 * 109.46899 * 180.02562 * 21 20 18 24 24 C 1.53003 * 109.47039 * 299.99838 * 21 20 18 25 25 C 1.52998 * 109.47066 * 272.37685 * 15 13 3 26 26 C 1.53779 * 113.61738 * 181.07392 * 25 15 13 27 27 C 1.53775 * 87.08605 * 139.97544 * 26 25 15 28 28 C 1.53782 * 87.17300 * 334.52689 * 27 26 25 29 29 H 1.09002 * 109.47349 * 64.84721 * 1 2 3 30 30 H 1.09001 * 109.46875 * 184.84819 * 1 2 3 31 31 H 1.09007 * 109.47573 * 304.84692 * 1 2 3 32 32 H 1.08993 * 109.46924 * 240.00327 * 2 1 3 33 33 H 1.08997 * 109.47136 * 120.00157 * 2 1 3 34 34 H 1.08997 * 109.46881 * 26.88279 * 4 3 2 35 35 H 1.09002 * 109.46614 * 146.88085 * 4 3 2 36 36 H 0.97002 * 119.99871 * 179.97438 * 8 7 5 37 37 H 0.97004 * 119.99286 * 24.99822 * 17 15 13 38 38 H 1.08997 * 109.47332 * 59.99668 * 22 21 20 39 39 H 1.08999 * 109.47396 * 180.02562 * 22 21 20 40 40 H 1.09009 * 109.47171 * 300.00178 * 22 21 20 41 41 H 1.08997 * 109.47571 * 60.00087 * 23 21 20 42 42 H 1.09002 * 109.47248 * 179.97438 * 23 21 20 43 43 H 1.09001 * 109.47096 * 299.99544 * 23 21 20 44 44 H 1.08999 * 109.47514 * 60.00113 * 24 21 20 45 45 H 1.08993 * 109.47199 * 180.02562 * 24 21 20 46 46 H 1.09004 * 109.47059 * 300.00127 * 24 21 20 47 47 H 1.09000 * 112.85515 * 49.87331 * 25 15 13 48 48 H 1.09009 * 113.61114 * 25.42710 * 26 25 15 49 49 H 1.09000 * 113.61662 * 254.53082 * 26 25 15 50 50 H 1.09005 * 113.61175 * 89.11566 * 27 26 25 51 51 H 1.08995 * 113.61788 * 219.93888 * 27 26 25 52 52 H 1.08999 * 113.61590 * 140.01969 * 28 27 26 53 53 H 1.08999 * 113.61384 * 270.92327 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3003 2.0585 -1.2681 5 6 3.7551 1.8817 -1.6193 6 1 4.4046 1.3206 -0.9637 7 6 4.2570 2.4362 -2.7775 8 7 3.4660 3.1191 -3.5762 9 14 6.0601 2.2165 -3.2132 10 1 6.7299 1.4135 -2.1588 11 1 6.1724 1.5144 -4.5169 12 1 6.7117 3.5475 -3.3100 13 6 2.2080 2.0289 1.1667 14 8 2.0542 1.4431 2.2174 15 6 2.6113 3.4810 1.1654 16 1 2.1714 3.9795 0.3017 17 7 2.1348 4.1212 2.3939 18 6 1.9146 5.4506 2.4194 19 8 2.1109 6.1180 1.4232 20 8 1.4772 6.0390 3.5486 21 6 1.2611 7.4741 3.5030 22 6 0.2121 7.7984 2.4375 23 6 0.7692 7.9593 4.8680 24 6 2.5750 8.1769 3.1556 25 6 4.1359 3.5868 1.0934 26 6 4.6547 5.0343 1.1130 27 6 5.7826 4.5346 2.0311 28 6 4.8324 3.4023 2.4552 29 1 -0.3634 0.4368 -0.9302 30 1 -0.3633 -1.0240 0.0869 31 1 -0.3634 0.5872 0.8434 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6815 1.6279 -2.0554 35 1 2.0766 3.1208 -1.1702 36 1 3.8192 3.5095 -4.3909 37 1 1.9778 3.5882 3.1891 38 1 -0.7239 7.2977 2.6849 39 1 0.0503 8.8757 2.4030 40 1 0.5630 7.4526 1.4651 41 1 1.5168 7.7285 5.6268 42 1 0.6074 9.0367 4.8340 43 1 -0.1668 7.4587 5.1160 44 1 2.9260 7.8312 2.1832 45 1 2.4129 9.2541 3.1218 46 1 3.3224 7.9459 3.9147 47 1 4.5652 2.9799 0.2962 48 1 3.9751 5.7351 1.5981 49 1 5.0050 5.3858 0.1426 50 1 6.6632 4.1864 1.4911 51 1 6.0267 5.2250 2.8384 52 1 5.3261 2.4370 2.5674 53 1 4.2014 3.6576 3.3064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496040842.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:11 Heat of formation + Delta-G solvation = -110.968236 kcal Electronic energy + Delta-G solvation = -32995.552540 eV Core-core repulsion = 28867.778337 eV Total energy + Delta-G solvation = -4127.774202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.30863 -41.08585 -39.47770 -37.89633 -37.04239 -35.63235 -34.80124 -34.59639 -32.33959 -29.75970 -28.88949 -28.32435 -28.24718 -26.49914 -25.27032 -24.98941 -24.21776 -22.71705 -21.23201 -20.17166 -20.14360 -19.33180 -18.49555 -17.83530 -17.68965 -17.58778 -17.19689 -16.48199 -16.39109 -16.10395 -15.90321 -15.59528 -15.29547 -14.79197 -14.60915 -14.43388 -14.31554 -14.22476 -13.65925 -13.53087 -13.37710 -13.27849 -13.21061 -13.12616 -12.99813 -12.85750 -12.75422 -12.71038 -12.67631 -12.60126 -12.43594 -12.28181 -12.12624 -11.78854 -11.74818 -11.66778 -11.41825 -11.30128 -11.12503 -11.01200 -10.71165 -10.51016 -10.09751 -9.52315 -8.19273 -6.31497 1.01420 1.39734 1.43706 1.52291 1.60292 1.76528 2.26042 2.43149 3.11478 3.17336 3.45481 3.72300 3.79514 3.81987 3.84668 3.91173 3.99088 4.04386 4.22221 4.35536 4.38289 4.46301 4.53499 4.60260 4.66086 4.75401 4.80705 4.80988 4.82147 4.86747 4.90195 4.92082 4.93377 4.94379 5.03169 5.03974 5.09604 5.17518 5.19357 5.22213 5.31035 5.34163 5.39072 5.43143 5.54663 5.64236 5.71759 5.80728 6.04624 6.38875 6.47172 6.79153 7.16520 7.34671 7.39252 8.87100 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.004291 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.285598 B = 6523.936127 C = 7539.673837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.108 3.892 3 N -0.592 5.592 4 C 0.249 3.751 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.028 3.972 8 N -0.917 5.917 9 Si 0.946 3.054 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.518 3.482 14 O -0.577 6.577 15 C 0.172 3.828 16 H 0.092 0.908 17 N -0.686 5.686 18 C 0.653 3.347 19 O -0.576 6.576 20 O -0.366 6.366 21 C 0.124 3.876 22 C -0.182 4.182 23 C -0.134 4.134 24 C -0.181 4.181 25 C -0.123 4.123 26 C -0.139 4.139 27 C -0.129 4.129 28 C -0.123 4.123 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.026 0.974 35 H 0.022 0.978 36 H 0.266 0.734 37 H 0.414 0.586 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.046 0.954 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.062 0.938 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 6.575 14.084 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 N -0.321 5.321 4 C 0.128 3.872 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.173 4.173 8 N -0.556 5.556 9 Si 0.772 3.228 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.306 3.694 14 O -0.459 6.459 15 C 0.064 3.936 16 H 0.110 0.890 17 N -0.347 5.347 18 C 0.407 3.593 19 O -0.466 6.466 20 O -0.281 6.281 21 C 0.088 3.912 22 C -0.239 4.239 23 C -0.191 4.191 24 C -0.238 4.238 25 C -0.143 4.143 26 C -0.176 4.176 27 C -0.167 4.167 28 C -0.161 4.161 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.252 0.748 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.083 0.917 47 H 0.124 0.876 48 H 0.114 0.886 49 H 0.065 0.935 50 H 0.098 0.902 51 H 0.098 0.902 52 H 0.081 0.919 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.400 6.745 13.976 15.887 hybrid contribution 0.751 -0.342 -0.824 1.166 sum -2.650 6.403 13.152 14.866 Atomic orbital electron populations 1.22033 0.94741 1.03105 1.01259 1.21484 0.95052 0.81991 1.02875 1.48208 1.62559 1.14538 1.06843 1.19179 0.95849 0.92234 0.79948 1.21547 0.94947 1.34124 1.06603 0.92303 1.25546 1.01315 0.94485 0.95957 1.70020 1.36981 1.35243 1.13353 0.85678 0.80836 0.77958 0.78352 1.18982 1.20498 1.20756 1.20353 0.76516 0.88865 0.83689 1.90566 1.54716 1.69086 1.31498 1.20388 0.96482 0.90005 0.86682 0.89032 1.44380 1.69691 1.05086 1.15538 1.17956 0.76336 0.82862 0.82143 1.90914 1.56981 1.63288 1.35439 1.86319 1.79286 1.27068 1.35417 1.22453 0.96251 0.73775 0.98700 1.22490 0.98159 1.03784 0.99458 1.21877 1.02119 1.02641 0.92421 1.22490 0.96286 1.02075 1.02939 1.23127 0.91369 0.99676 1.00104 1.23187 0.98622 0.95968 0.99845 1.22737 0.96616 0.97968 0.99342 1.22878 0.98064 0.98967 0.96167 0.92933 0.89196 0.93884 0.89985 0.90784 0.95555 0.96012 0.92473 0.74806 0.92133 0.88841 0.92290 0.91048 0.87749 0.91300 0.92051 0.88965 0.91747 0.87641 0.88579 0.93496 0.90160 0.90200 0.91889 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 10.23 71.98 0.74 -3.80 16 2 C 0.11 3.78 6.13 86.38 0.53 4.31 16 3 N -0.59 -24.35 2.46 -826.15 -2.04 -26.39 16 4 C 0.25 11.75 4.97 85.63 0.43 12.17 16 5 C -0.53 -26.81 7.28 25.60 0.19 -26.63 16 6 H 0.06 2.98 7.39 -2.91 -0.02 2.96 16 7 C 0.03 1.44 5.46 84.65 0.46 1.90 16 8 N -0.92 -50.47 13.29 21.45 0.28 -50.18 16 9 Si 0.95 41.49 29.54 68.60 2.03 43.51 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.52 21.07 6.82 87.66 0.60 21.66 16 14 O -0.58 -23.93 15.64 -3.02 -0.05 -23.98 16 15 C 0.17 6.68 1.91 44.25 0.08 6.77 16 16 H 0.09 4.10 5.51 -2.39 -0.01 4.08 16 17 N -0.69 -23.18 3.61 -573.73 -2.07 -25.25 16 18 C 0.65 21.76 6.79 129.79 0.88 22.65 16 19 O -0.58 -21.65 9.10 19.81 0.18 -21.47 16 20 O -0.37 -10.34 9.94 -55.47 -0.55 -10.89 16 21 C 0.12 2.78 1.13 -10.80 -0.01 2.77 16 22 C -0.18 -4.17 8.37 71.98 0.60 -3.57 16 23 C -0.13 -1.98 8.85 71.98 0.64 -1.34 16 24 C -0.18 -3.98 8.37 71.98 0.60 -3.38 16 25 C -0.12 -4.69 3.49 -10.17 -0.04 -4.73 16 26 C -0.14 -5.00 7.19 31.12 0.22 -4.78 16 27 C -0.13 -3.86 8.07 31.12 0.25 -3.61 16 28 C -0.12 -3.96 7.48 31.22 0.23 -3.73 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.08 2.80 8.06 -2.39 -0.02 2.78 16 33 H 0.07 2.56 7.42 -2.39 -0.02 2.54 16 34 H 0.03 1.31 8.05 -2.39 -0.02 1.29 16 35 H 0.02 1.12 5.89 -2.39 -0.01 1.11 16 36 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 37 H 0.41 13.16 7.75 -92.71 -0.72 12.44 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 1.77 5.88 -2.38 -0.01 1.76 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 1.76 5.88 -2.39 -0.01 1.75 16 45 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.11 4.62 5.42 -2.39 -0.01 4.61 16 48 H 0.10 3.50 4.12 -2.38 -0.01 3.49 16 49 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 50 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 51 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 52 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 53 H 0.08 2.57 6.80 -2.39 -0.02 2.56 16 Total: -1.00 -59.54 407.89 4.38 -55.16 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: 0.19 Total: 42.82 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 6.41 Total: 16.67 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -3.82 Total: -101.83 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -0.42 Total: -56.34 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -59.54 4.38 -55.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496040842.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.806 kcal (2) G-P(sol) polarization free energy of solvation -59.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds