Wall clock time and date at job start Sat Apr 11 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47492 * 2 1 4 4 N 1.46492 * 109.47181 * 120.00852 * 2 1 3 5 5 C 1.34780 * 119.99941 * 274.99977 * 4 2 1 6 6 O 1.21516 * 119.99792 * 359.97438 * 5 4 2 7 7 O 1.34636 * 120.00201 * 180.02562 * 5 4 2 8 8 C 1.45197 * 116.99969 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47196 * 59.99831 * 8 7 5 10 10 C 1.53005 * 109.47222 * 179.97438 * 8 7 5 11 11 C 1.53007 * 109.47124 * 299.99600 * 8 7 5 12 12 C 1.50702 * 109.46667 * 240.00516 * 2 1 3 13 13 O 1.21284 * 119.99796 * 262.92049 * 12 2 1 14 14 N 1.34776 * 120.00405 * 82.92614 * 12 2 1 15 15 C 1.46924 * 120.63217 * 174.83528 * 14 12 2 16 16 C 1.53194 * 108.77443 * 233.58369 * 15 14 12 17 17 C 1.53037 * 109.31490 * 305.36765 * 16 15 14 18 18 C 1.52994 * 109.46270 * 181.38576 * 17 16 15 19 19 C 1.50696 * 109.47369 * 64.93040 * 18 17 16 20 20 H 1.07999 * 119.99709 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00557 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00711 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99753 * 0.02562 * 21 19 18 24 24 H 1.48509 * 109.46986 * 89.99579 * 23 21 19 25 25 H 1.48498 * 109.47363 * 210.00039 * 23 21 19 26 26 H 1.48498 * 109.47166 * 329.99947 * 23 21 19 27 27 C 1.53047 * 109.54068 * 61.36270 * 17 16 15 28 28 C 1.46925 * 120.62761 * 354.81345 * 14 12 2 29 29 H 1.09000 * 109.46802 * 301.20216 * 1 2 3 30 30 H 1.08997 * 109.47187 * 61.20173 * 1 2 3 31 31 H 1.09002 * 109.47373 * 181.20491 * 1 2 3 32 32 H 0.97007 * 120.00694 * 94.99645 * 4 2 1 33 33 H 1.08995 * 109.47132 * 59.99931 * 9 8 7 34 34 H 1.08999 * 109.46729 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.46600 * 299.99829 * 9 8 7 36 36 H 1.09002 * 109.46775 * 60.00328 * 10 8 7 37 37 H 1.08999 * 109.46935 * 179.97438 * 10 8 7 38 38 H 1.08995 * 109.47169 * 300.00107 * 10 8 7 39 39 H 1.08995 * 109.46591 * 60.00325 * 11 8 7 40 40 H 1.09004 * 109.46823 * 179.97438 * 11 8 7 41 41 H 1.08994 * 109.47139 * 299.99654 * 11 8 7 42 42 H 1.08996 * 109.59019 * 353.37453 * 15 14 12 43 43 H 1.09000 * 109.58589 * 113.80227 * 15 14 12 44 44 H 1.09000 * 109.49711 * 65.31566 * 16 15 14 45 45 H 1.08994 * 109.49973 * 185.41407 * 16 15 14 46 46 H 1.09003 * 109.46304 * 301.34551 * 17 16 15 47 47 H 1.09002 * 109.47494 * 184.93211 * 18 17 16 48 48 H 1.09001 * 109.47137 * 304.93237 * 18 17 16 49 49 H 0.96993 * 120.00554 * 180.02562 * 22 21 19 50 50 H 1.08996 * 109.50156 * 178.68238 * 27 17 16 51 51 H 1.09005 * 109.51876 * 58.60087 * 27 17 16 52 52 H 1.09002 * 109.58696 * 246.20464 * 28 14 12 53 53 H 1.09007 * 109.58861 * 6.48097 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1470 -0.0185 2.3571 6 8 1.8585 1.1606 2.4117 7 8 2.5963 -0.6532 3.4562 8 6 2.7102 0.1334 4.6713 9 6 1.3358 0.6887 5.0502 10 6 3.2322 -0.7518 5.8049 11 6 3.6823 1.2921 4.4395 12 6 2.0322 -0.7103 -1.2306 13 8 2.3563 -1.8773 -1.1673 14 7 2.1213 -0.0488 -2.4014 15 6 2.7137 -0.6926 -3.5818 16 6 3.8243 0.2091 -4.1299 17 6 3.2581 1.6062 -4.3936 18 6 4.3560 2.5001 -4.9736 19 6 4.7705 1.9748 -6.3238 20 1 4.2978 1.0919 -6.7281 21 6 5.7532 2.6212 -7.0431 22 7 6.1147 2.1631 -8.2218 23 14 6.5714 4.1479 -6.3436 24 1 7.7613 3.7515 -5.5484 25 1 6.9929 5.0373 -7.4556 26 1 5.6103 4.8686 -5.4706 27 6 2.7501 2.2087 -3.0817 28 6 1.6274 1.3297 -2.5218 29 1 -0.3633 0.5324 0.8790 30 1 -0.3633 0.4950 -0.9005 31 1 -0.3634 -1.0274 0.0216 32 1 2.2490 -1.6320 1.1524 33 1 0.6434 -0.1367 5.2153 34 1 1.4213 1.2788 5.9626 35 1 0.9636 1.3192 4.2427 36 1 4.2114 -1.1477 5.5352 37 1 3.3182 -0.1611 6.7169 38 1 2.5395 -1.5770 5.9699 39 1 3.3099 1.9226 3.6322 40 1 3.7674 1.8829 5.3516 41 1 4.6614 0.8965 4.1697 42 1 3.1330 -1.6583 -3.2996 43 1 1.9477 -0.8332 -4.3444 44 1 4.6319 0.2756 -3.4008 45 1 4.2072 -0.2099 -5.0604 46 1 2.4343 1.5361 -5.1039 47 1 3.9784 3.5171 -5.0797 48 1 5.2161 2.4999 -4.3040 49 1 6.8062 2.6176 -8.7276 50 1 2.3684 3.2129 -3.2662 51 1 3.5676 2.2568 -2.3623 52 1 0.7727 1.3539 -3.1979 53 1 1.3274 1.6974 -1.5404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496571598.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:25 Heat of formation + Delta-G solvation = -153.385188 kcal Electronic energy + Delta-G solvation = -30985.944631 eV Core-core repulsion = 26856.331091 eV Total energy + Delta-G solvation = -4129.613540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.08140 -41.33069 -39.11140 -38.29494 -36.14374 -35.78005 -35.02729 -34.10604 -32.42162 -31.37543 -30.21955 -28.33371 -28.27742 -26.73044 -25.59823 -24.31213 -23.51428 -22.62964 -21.29020 -21.14842 -20.15388 -19.46849 -18.82769 -18.02185 -17.67866 -17.27105 -17.12264 -16.49555 -16.36119 -15.99733 -15.53999 -15.38116 -15.33575 -15.03154 -14.81824 -14.59145 -14.44712 -14.42010 -14.14254 -13.86941 -13.44663 -13.33052 -13.30487 -13.16356 -13.07431 -12.90405 -12.86771 -12.84720 -12.74780 -12.43980 -12.39627 -12.31065 -12.15061 -11.99295 -11.71999 -11.41771 -11.38422 -11.18908 -11.13276 -11.05609 -10.78545 -10.71307 -10.38755 -9.70218 -8.25449 -6.27196 0.92217 1.35990 1.37215 1.42927 1.48409 1.69267 1.93788 2.37553 3.07198 3.10263 3.22244 3.76157 3.81398 3.82179 3.93672 3.96709 3.97844 4.00923 4.05810 4.18363 4.39896 4.48595 4.52455 4.58911 4.64796 4.65439 4.70236 4.77805 4.79323 4.79386 4.84766 4.87753 4.90186 4.93304 5.03003 5.08837 5.13514 5.18956 5.19637 5.23420 5.30561 5.31170 5.36117 5.43523 5.53601 5.57275 5.71557 5.75428 6.28046 6.29026 6.34485 6.80994 6.92634 7.25133 7.36661 8.90932 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015598 B = 0.002363 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.725290 B =11844.607072 C =12742.411545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.119 0.881 4 N -0.696 5.696 5 C 0.654 3.346 6 O -0.582 6.582 7 O -0.370 6.370 8 C 0.124 3.876 9 C -0.178 4.178 10 C -0.137 4.137 11 C -0.182 4.182 12 C 0.513 3.487 13 O -0.573 6.573 14 N -0.597 5.597 15 C 0.120 3.880 16 C -0.113 4.113 17 C -0.070 4.070 18 C -0.008 4.008 19 C -0.516 4.516 20 H 0.039 0.961 21 C 0.000 4.000 22 N -0.953 5.953 23 Si 0.944 3.056 24 H -0.274 1.274 25 H -0.288 1.288 26 H -0.243 1.243 27 C -0.128 4.128 28 C 0.102 3.898 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.415 0.585 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.022 0.978 48 H 0.008 0.992 49 H 0.263 0.737 50 H 0.092 0.908 51 H 0.057 0.943 52 H 0.096 0.904 53 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.029 -2.499 28.540 31.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.137 0.863 4 N -0.357 5.357 5 C 0.408 3.592 6 O -0.472 6.472 7 O -0.285 6.285 8 C 0.088 3.912 9 C -0.235 4.235 10 C -0.194 4.194 11 C -0.239 4.239 12 C 0.300 3.700 13 O -0.453 6.453 14 N -0.329 5.329 15 C -0.002 4.002 16 C -0.152 4.152 17 C -0.088 4.088 18 C -0.045 4.045 19 C -0.554 4.554 20 H 0.057 0.943 21 C -0.196 4.196 22 N -0.595 5.595 23 Si 0.768 3.232 24 H -0.200 1.200 25 H -0.214 1.214 26 H -0.167 1.167 27 C -0.166 4.166 28 C -0.020 4.020 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.252 0.748 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.040 0.960 48 H 0.027 0.973 49 H 0.072 0.928 50 H 0.110 0.890 51 H 0.076 0.924 52 H 0.114 0.886 53 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.873 -2.485 28.539 31.406 hybrid contribution 1.163 0.043 -0.760 1.390 sum -11.710 -2.442 27.779 30.245 Atomic orbital electron populations 1.22153 0.90401 1.03848 1.04879 1.20817 0.97281 0.97127 0.80747 0.86335 1.44485 1.69666 1.15071 1.06498 1.18012 0.76447 0.83465 0.81301 1.90895 1.55993 1.15141 1.85180 1.86330 1.79007 1.44399 1.18767 1.22465 0.97011 0.91398 0.80362 1.22465 0.95269 1.02154 1.03637 1.21899 1.01880 1.00009 0.95632 1.22494 0.98595 0.98371 1.04416 1.20754 0.77566 0.86691 0.84942 1.90676 1.51596 1.17601 1.85383 1.48151 1.59269 1.15680 1.09807 1.21593 0.95881 0.96199 0.86558 1.21769 0.97097 0.96099 1.00196 1.20931 0.97579 0.94144 0.96158 1.19593 0.94986 0.95974 0.93984 1.21492 1.19508 1.11833 1.02582 0.94292 1.25981 0.97657 1.00887 0.95047 1.70066 1.32366 1.42712 1.14350 0.85749 0.79372 0.79737 0.78306 1.19987 1.21380 1.16677 1.22005 0.98423 0.99896 0.96322 1.22162 0.96964 0.78983 1.03843 0.90355 0.88527 0.91527 0.74766 0.91841 0.89056 0.91497 0.91610 0.87797 0.91091 0.91653 0.88932 0.92484 0.90363 0.90144 0.93456 0.92225 0.91790 0.95964 0.97318 0.92806 0.88971 0.92373 0.88551 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.23 71.98 0.66 -1.66 16 2 C 0.15 2.94 2.11 44.25 0.09 3.04 16 3 H 0.12 2.33 6.06 -2.39 -0.01 2.32 16 4 N -0.70 -15.13 5.05 -573.73 -2.90 -18.03 16 5 C 0.65 15.19 8.02 129.79 1.04 16.23 16 6 O -0.58 -14.88 11.54 19.79 0.23 -14.65 16 7 O -0.37 -7.90 9.94 -55.45 -0.55 -8.46 16 8 C 0.12 2.01 1.13 -10.79 -0.01 2.00 16 9 C -0.18 -2.63 8.37 71.98 0.60 -2.03 16 10 C -0.14 -1.45 8.85 71.98 0.64 -0.81 16 11 C -0.18 -3.03 8.37 71.98 0.60 -2.43 16 12 C 0.51 12.85 6.92 87.66 0.61 13.46 16 13 O -0.57 -17.98 15.40 -3.04 -0.05 -18.03 16 14 N -0.60 -14.48 2.97 -818.90 -2.43 -16.91 16 15 C 0.12 3.42 6.42 86.36 0.55 3.98 16 16 C -0.11 -3.94 5.19 30.67 0.16 -3.78 16 17 C -0.07 -2.39 2.10 -10.77 -0.02 -2.41 16 18 C -0.01 -0.35 3.52 29.84 0.10 -0.25 16 19 C -0.52 -28.57 8.94 25.60 0.23 -28.34 16 20 H 0.04 2.36 7.30 -2.91 -0.02 2.34 16 21 C 0.00 0.02 5.47 84.65 0.46 0.48 16 22 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 23 Si 0.94 44.04 27.47 68.60 1.88 45.92 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 27 C -0.13 -3.22 5.36 30.67 0.16 -3.05 16 28 C 0.10 1.93 5.71 86.36 0.49 2.43 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.09 7.10 -2.39 -0.02 1.07 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.41 9.11 7.87 -92.70 -0.73 8.38 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.31 5.88 -2.39 -0.01 1.30 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 1.43 5.88 -2.39 -0.01 1.41 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 2.40 7.04 -2.39 -0.02 2.38 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 2.42 6.91 -2.39 -0.02 2.41 16 46 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 48 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 49 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 50 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.06 1.53 8.14 -2.38 -0.02 1.52 16 52 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.11 1.53 5.02 -2.38 -0.01 1.52 16 Total: -1.00 -71.57 407.07 2.97 -68.59 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.11 Total: 23.94 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 6.38 Total: -3.16 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -5.03 Total: -94.17 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.37 Total: -41.13 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -71.57 2.97 -68.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496571598.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.792 kcal (2) G-P(sol) polarization free energy of solvation -71.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds