Wall clock time and date at job start Sat Apr 11 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00030 * 2 1 4 4 O 1.20824 * 119.99844 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99908 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46820 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47085 * 180.02562 * 6 5 3 8 8 C 1.53117 * 109.52545 * 175.00188 * 7 6 5 9 9 C 1.53031 * 109.27851 * 177.56050 * 8 7 6 10 10 N 1.46847 * 109.52507 * 300.82354 * 9 8 7 11 11 C 1.46904 * 111.00038 * 185.84140 * 10 9 8 12 12 H 1.08995 * 109.47207 * 55.00336 * 11 10 9 13 13 C 1.52993 * 109.47028 * 294.99800 * 11 10 9 14 14 C 1.50706 * 109.46965 * 174.99961 * 11 10 9 15 15 O 1.21279 * 120.00160 * 16.81957 * 14 11 10 16 16 N 1.34780 * 119.99675 * 196.54625 * 14 11 10 17 17 C 1.46496 * 120.00164 * 355.46315 * 16 14 11 18 18 C 1.46495 * 119.99555 * 175.45829 * 16 14 11 19 19 C 1.50695 * 109.47046 * 90.00509 * 18 16 14 20 20 H 1.07997 * 120.00407 * 359.97438 * 19 18 16 21 21 C 1.37887 * 120.00274 * 179.97438 * 19 18 16 22 22 N 1.31514 * 119.99516 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00091 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47297 * 89.99893 * 23 21 19 25 25 H 1.48503 * 109.46814 * 209.99797 * 23 21 19 26 26 H 1.48498 * 109.47112 * 329.99543 * 23 21 19 27 27 C 1.46843 * 111.19918 * 61.74169 * 10 9 8 28 28 C 1.53041 * 109.52347 * 298.25821 * 27 10 9 29 29 H 1.09004 * 109.47039 * 60.00321 * 1 2 3 30 30 H 1.08998 * 109.47150 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47195 * 300.00015 * 1 2 3 32 32 H 1.09005 * 109.46853 * 60.00717 * 5 3 2 33 33 H 1.08999 * 109.47655 * 300.00671 * 5 3 2 34 34 H 1.09000 * 109.47089 * 60.00973 * 6 5 3 35 35 H 1.08999 * 109.47284 * 300.00511 * 6 5 3 36 36 H 1.09009 * 109.57200 * 54.84381 * 7 6 5 37 37 H 1.09003 * 109.50018 * 57.61966 * 8 7 6 38 38 H 1.08991 * 109.50402 * 297.50753 * 8 7 6 39 39 H 1.08996 * 109.46264 * 180.80835 * 9 8 7 40 40 H 1.08997 * 109.46626 * 60.83807 * 9 8 7 41 41 H 1.08996 * 109.47371 * 68.03604 * 13 11 10 42 42 H 1.09001 * 109.47630 * 188.03463 * 13 11 10 43 43 H 1.09003 * 109.47178 * 308.03365 * 13 11 10 44 44 H 1.09002 * 109.47260 * 95.64143 * 17 16 14 45 45 H 1.08990 * 109.47207 * 215.64277 * 17 16 14 46 46 H 1.09005 * 109.47238 * 335.64503 * 17 16 14 47 47 H 1.09007 * 109.46938 * 210.00016 * 18 16 14 48 48 H 1.09000 * 109.47436 * 329.99928 * 18 16 14 49 49 H 0.96995 * 119.99484 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.46049 * 58.27649 * 27 10 9 51 51 H 1.09003 * 109.46270 * 178.24250 * 27 10 9 52 52 H 1.09003 * 109.50245 * 299.23771 * 28 27 10 53 53 H 1.09003 * 109.50148 * 179.12125 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 6 5.5280 2.8222 -0.0002 8 6 5.9638 4.2846 -0.1267 9 6 7.4908 4.3639 -0.0650 10 7 7.9603 3.8029 1.2083 11 6 9.4095 3.9878 1.3626 12 1 9.6546 5.0442 1.2532 13 6 10.1437 3.1802 0.2905 14 6 9.8340 3.5125 2.7282 15 8 9.1004 2.7962 3.3761 16 7 11.0312 3.8789 3.2273 17 6 11.9611 4.6559 2.4042 18 6 11.4024 3.5001 4.5929 19 6 12.1025 2.1659 4.5713 20 1 12.2553 1.6512 3.6342 21 6 12.5481 1.6020 5.7480 22 7 12.3625 2.2289 6.8892 23 14 13.4167 -0.0516 5.7212 24 1 14.8776 0.1591 5.5590 25 1 13.1584 -0.7671 6.9966 26 1 12.9044 -0.8615 4.5868 27 6 7.5946 2.3861 1.3313 28 6 6.0706 2.2477 1.3113 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.9564 0.7806 -0.8893 33 1 3.9558 0.7808 0.8907 34 1 3.6101 3.2367 0.8894 35 1 3.6107 3.2356 -0.8906 36 1 5.9237 2.2503 -0.8397 37 1 5.5359 4.8638 0.6915 38 1 5.6167 4.6867 -1.0784 39 1 7.8037 5.4052 -0.1404 40 1 7.9178 3.7958 -0.8915 41 1 9.9480 3.6150 -0.6896 42 1 11.2151 3.2012 0.4898 43 1 9.7911 2.1489 0.3074 44 1 11.8461 5.7164 2.6286 45 1 12.9836 4.3474 2.6215 46 1 11.7455 4.4822 1.3499 47 1 12.0700 4.2540 5.0102 48 1 10.5047 3.4296 5.2071 49 1 12.6763 1.8324 7.7169 50 1 8.0210 1.8273 0.4983 51 1 7.9829 1.9909 2.2701 52 1 5.6444 2.7949 2.1522 53 1 5.7998 1.1945 1.3870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531479385.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:46 Heat of formation + Delta-G solvation = -116.889668 kcal Electronic energy + Delta-G solvation = -30648.351103 eV Core-core repulsion = 26520.320128 eV Total energy + Delta-G solvation = -4128.030975 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.77449 -40.08024 -38.35581 -36.89914 -35.53826 -34.81505 -32.80832 -32.15333 -30.66267 -29.69804 -28.06627 -27.55721 -26.15647 -25.49800 -24.00270 -23.16358 -22.48299 -21.37810 -20.51134 -19.50212 -18.41784 -17.85981 -16.94144 -16.82483 -16.50354 -16.37884 -15.91869 -15.11388 -14.93577 -14.61019 -14.49330 -14.46109 -14.07609 -13.97999 -13.86195 -13.55333 -13.20248 -12.93625 -12.78001 -12.63879 -12.47627 -12.22127 -12.13094 -12.03554 -11.93738 -11.71771 -11.51374 -11.39293 -11.26898 -11.14343 -11.10816 -10.84726 -10.83751 -10.71143 -10.66326 -10.54786 -10.26606 -10.23213 -10.00082 -9.61174 -8.58627 -8.42708 -7.96133 -7.60770 -6.03170 -4.07642 1.92831 2.42733 3.29879 3.36360 3.38916 3.43344 3.73870 4.28221 4.40695 4.45132 4.50966 4.64664 4.75629 4.81287 4.82989 4.97853 4.99308 5.08244 5.15108 5.22071 5.25087 5.27476 5.31334 5.37652 5.43464 5.49088 5.55406 5.61136 5.67800 5.71663 5.74508 5.84210 5.88030 5.94916 5.97446 6.03371 6.05284 6.11311 6.16993 6.24584 6.29199 6.50282 6.61670 7.04112 7.25626 7.36322 7.45501 7.48043 7.58387 7.93409 8.24866 8.45391 8.92265 9.14563 9.57220 11.04852 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.002281 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.269529 B =12274.849464 C =13679.190816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.509 6.509 5 C -0.116 4.116 6 C -0.101 4.101 7 C -0.089 4.089 8 C -0.108 4.108 9 C 0.054 3.946 10 N -0.514 5.514 11 C 0.064 3.936 12 H 0.097 0.903 13 C -0.186 4.186 14 C 0.515 3.485 15 O -0.524 6.524 16 N -0.601 5.601 17 C 0.074 3.926 18 C 0.247 3.753 19 C -0.523 4.523 20 H 0.056 0.944 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.025 3.975 28 C -0.110 4.110 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.045 0.955 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.031 0.969 48 H 0.043 0.957 49 H 0.263 0.737 50 H 0.024 0.976 51 H 0.131 0.869 52 H 0.072 0.928 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.349 1.328 -18.663 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.396 6.396 5 C -0.154 4.154 6 C -0.139 4.139 7 C -0.108 4.108 8 C -0.145 4.145 9 C -0.074 4.074 10 N -0.238 5.238 11 C -0.048 4.048 12 H 0.115 0.885 13 C -0.245 4.245 14 C 0.301 3.699 15 O -0.401 6.401 16 N -0.333 5.333 17 C -0.070 4.070 18 C 0.128 3.872 19 C -0.562 4.562 20 H 0.074 0.926 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.102 4.102 28 C -0.148 4.148 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.049 0.951 48 H 0.061 0.939 49 H 0.073 0.927 50 H 0.042 0.958 51 H 0.148 0.852 52 H 0.091 0.909 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.162 1.491 -17.709 24.022 hybrid contribution 0.809 -1.228 -0.698 1.627 sum -15.353 0.264 -18.407 23.971 Atomic orbital electron populations 1.23256 0.76437 1.03670 1.02528 1.86527 1.23435 1.33787 1.84161 1.24019 0.92505 0.81175 0.71989 1.90670 1.67375 1.36363 1.45235 1.21546 0.86749 1.00891 1.06173 1.21480 0.95542 0.93173 1.03680 1.21267 0.93749 0.96978 0.98801 1.21574 0.94988 0.96123 1.01851 1.22097 0.95416 0.99552 0.90349 1.61889 1.11085 1.18312 1.32561 1.21646 0.88457 1.00708 0.93955 0.88518 1.22493 1.01953 1.01520 0.98532 1.20059 0.81716 0.80987 0.87177 1.90453 1.52567 1.36559 1.60520 1.48111 1.15015 1.53131 1.17055 1.21828 0.95203 0.95048 0.94884 1.19270 0.96589 0.95275 0.76107 1.21409 1.36970 1.04512 0.93313 0.92557 1.24942 0.96195 0.97734 0.95316 1.69932 1.46707 1.38773 0.97958 0.86510 0.79559 0.83882 0.77535 1.20710 1.21099 1.19945 1.22847 0.95257 0.87573 1.04520 1.21688 0.95763 1.00303 0.97018 0.91986 0.88124 0.91857 0.87712 0.87120 0.90740 0.91234 0.91449 0.90901 0.91799 0.91089 0.94975 0.92029 0.90805 0.91501 0.93695 0.90952 0.91755 0.95062 0.93891 0.92747 0.95806 0.85222 0.90944 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.39 10.57 -39.26 -0.41 -3.81 16 3 C 0.46 4.68 7.96 36.01 0.29 4.97 16 4 O -0.51 -6.56 15.73 -18.75 -0.29 -6.86 16 5 C -0.12 -0.93 5.57 -27.88 -0.16 -1.09 16 6 C -0.10 -0.91 3.98 -26.73 -0.11 -1.01 16 7 C -0.09 -0.85 2.25 -90.50 -0.20 -1.06 16 8 C -0.11 -1.06 5.38 -26.65 -0.14 -1.21 16 9 C 0.05 0.60 5.03 -3.84 -0.02 0.58 16 10 N -0.51 -7.44 4.55 -228.09 -1.04 -8.48 16 11 C 0.06 0.97 1.93 -68.86 -0.13 0.83 16 12 H 0.10 1.29 7.46 -51.93 -0.39 0.90 16 13 C -0.19 -2.40 8.07 37.15 0.30 -2.10 16 14 C 0.51 10.48 6.83 -10.98 -0.07 10.41 16 15 O -0.52 -12.70 12.98 5.56 0.07 -12.63 16 16 N -0.60 -12.57 2.86 -182.96 -0.52 -13.09 16 17 C 0.07 1.16 9.87 59.84 0.59 1.75 16 18 C 0.25 6.42 5.15 -5.20 -0.03 6.40 16 19 C -0.52 -14.71 9.39 -34.44 -0.32 -15.04 16 20 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 23 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.02 0.37 4.54 -3.83 -0.02 0.35 16 28 C -0.11 -1.32 5.08 -26.65 -0.14 -1.45 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.11 0.83 6.64 -51.93 -0.34 0.48 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.03 0.34 6.92 -51.93 -0.36 -0.02 16 41 H 0.06 0.64 7.07 -51.93 -0.37 0.27 16 42 H 0.07 0.95 5.88 -51.93 -0.31 0.65 16 43 H 0.07 0.94 6.11 -51.93 -0.32 0.62 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 46 H 0.06 0.81 4.34 -51.93 -0.23 0.59 16 47 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 48 H 0.04 1.26 7.49 -51.93 -0.39 0.87 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.02 0.33 6.44 -51.93 -0.33 0.00 16 51 H 0.13 2.48 4.76 -52.35 -0.25 2.23 16 52 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 53 H 0.06 0.68 6.71 -51.93 -0.35 0.33 16 LS Contribution 407.51 15.07 6.14 6.14 Total: -1.00 -34.12 407.51 -8.61 -42.73 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -9.08 Total: -0.20 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 0.81 Total: 5.25 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.82 Total: -47.39 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.64 Total: -23.29 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.12 -8.61 -42.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531479385.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.159 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds