Wall clock time and date at job start Sat Apr 11 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00030 * 2 1 4 4 O 1.20824 * 119.99844 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99908 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46820 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47085 * 180.02562 * 6 5 3 8 8 C 1.53117 * 109.52545 * 175.00188 * 7 6 5 9 9 C 1.53031 * 109.27851 * 177.56050 * 8 7 6 10 10 N 1.46847 * 109.52507 * 300.82354 * 9 8 7 11 11 C 1.46904 * 111.00038 * 185.84140 * 10 9 8 12 12 H 1.08995 * 109.47207 * 55.00336 * 11 10 9 13 13 C 1.52993 * 109.47028 * 294.99800 * 11 10 9 14 14 C 1.50706 * 109.46965 * 174.99961 * 11 10 9 15 15 O 1.21279 * 120.00160 * 16.81957 * 14 11 10 16 16 N 1.34780 * 119.99675 * 196.54625 * 14 11 10 17 17 C 1.46496 * 120.00164 * 355.46315 * 16 14 11 18 18 C 1.46495 * 119.99555 * 175.45829 * 16 14 11 19 19 C 1.50695 * 109.47046 * 90.00509 * 18 16 14 20 20 H 1.07997 * 120.00407 * 359.97438 * 19 18 16 21 21 C 1.37887 * 120.00274 * 179.97438 * 19 18 16 22 22 N 1.31514 * 119.99516 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00091 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47297 * 89.99893 * 23 21 19 25 25 H 1.48503 * 109.46814 * 209.99797 * 23 21 19 26 26 H 1.48498 * 109.47112 * 329.99543 * 23 21 19 27 27 C 1.46843 * 111.19918 * 61.74169 * 10 9 8 28 28 C 1.53041 * 109.52347 * 298.25821 * 27 10 9 29 29 H 1.09004 * 109.47039 * 60.00321 * 1 2 3 30 30 H 1.08998 * 109.47150 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47195 * 300.00015 * 1 2 3 32 32 H 1.09005 * 109.46853 * 60.00717 * 5 3 2 33 33 H 1.08999 * 109.47655 * 300.00671 * 5 3 2 34 34 H 1.09000 * 109.47089 * 60.00973 * 6 5 3 35 35 H 1.08999 * 109.47284 * 300.00511 * 6 5 3 36 36 H 1.09009 * 109.57200 * 54.84381 * 7 6 5 37 37 H 1.09003 * 109.50018 * 57.61966 * 8 7 6 38 38 H 1.08991 * 109.50402 * 297.50753 * 8 7 6 39 39 H 1.08996 * 109.46264 * 180.80835 * 9 8 7 40 40 H 1.08997 * 109.46626 * 60.83807 * 9 8 7 41 41 H 1.08996 * 109.47371 * 68.03604 * 13 11 10 42 42 H 1.09001 * 109.47630 * 188.03463 * 13 11 10 43 43 H 1.09003 * 109.47178 * 308.03365 * 13 11 10 44 44 H 1.09002 * 109.47260 * 95.64143 * 17 16 14 45 45 H 1.08990 * 109.47207 * 215.64277 * 17 16 14 46 46 H 1.09005 * 109.47238 * 335.64503 * 17 16 14 47 47 H 1.09007 * 109.46938 * 210.00016 * 18 16 14 48 48 H 1.09000 * 109.47436 * 329.99928 * 18 16 14 49 49 H 0.96995 * 119.99484 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.46049 * 58.27649 * 27 10 9 51 51 H 1.09003 * 109.46270 * 178.24250 * 27 10 9 52 52 H 1.09003 * 109.50245 * 299.23771 * 28 27 10 53 53 H 1.09003 * 109.50148 * 179.12125 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 6 5.5280 2.8222 -0.0002 8 6 5.9638 4.2846 -0.1267 9 6 7.4908 4.3639 -0.0650 10 7 7.9603 3.8029 1.2083 11 6 9.4095 3.9878 1.3626 12 1 9.6546 5.0442 1.2532 13 6 10.1437 3.1802 0.2905 14 6 9.8340 3.5125 2.7282 15 8 9.1004 2.7962 3.3761 16 7 11.0312 3.8789 3.2273 17 6 11.9611 4.6559 2.4042 18 6 11.4024 3.5001 4.5929 19 6 12.1025 2.1659 4.5713 20 1 12.2553 1.6512 3.6342 21 6 12.5481 1.6020 5.7480 22 7 12.3625 2.2289 6.8892 23 14 13.4167 -0.0516 5.7212 24 1 14.8776 0.1591 5.5590 25 1 13.1584 -0.7671 6.9966 26 1 12.9044 -0.8615 4.5868 27 6 7.5946 2.3861 1.3313 28 6 6.0706 2.2477 1.3113 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.9564 0.7806 -0.8893 33 1 3.9558 0.7808 0.8907 34 1 3.6101 3.2367 0.8894 35 1 3.6107 3.2356 -0.8906 36 1 5.9237 2.2503 -0.8397 37 1 5.5359 4.8638 0.6915 38 1 5.6167 4.6867 -1.0784 39 1 7.8037 5.4052 -0.1404 40 1 7.9178 3.7958 -0.8915 41 1 9.9480 3.6150 -0.6896 42 1 11.2151 3.2012 0.4898 43 1 9.7911 2.1489 0.3074 44 1 11.8461 5.7164 2.6286 45 1 12.9836 4.3474 2.6215 46 1 11.7455 4.4822 1.3499 47 1 12.0700 4.2540 5.0102 48 1 10.5047 3.4296 5.2071 49 1 12.6763 1.8324 7.7169 50 1 8.0210 1.8273 0.4983 51 1 7.9829 1.9909 2.2701 52 1 5.6444 2.7949 2.1522 53 1 5.7998 1.1945 1.3870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531479385.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:44 Heat of formation + Delta-G solvation = -139.200165 kcal Electronic energy + Delta-G solvation = -30649.318558 eV Core-core repulsion = 26520.320128 eV Total energy + Delta-G solvation = -4128.998431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.58106 -41.33546 -39.56669 -37.70101 -36.70073 -36.38301 -34.75859 -33.22639 -31.62892 -30.78773 -29.46499 -28.60953 -27.51964 -26.50489 -25.56767 -24.14546 -23.86785 -22.41457 -21.28804 -20.45865 -19.90489 -18.66514 -18.62240 -17.88199 -17.63916 -17.48742 -17.29717 -16.60766 -16.12323 -15.91566 -15.84847 -15.53195 -15.28455 -14.84180 -14.76869 -14.56981 -14.38010 -14.07707 -14.00763 -13.74321 -13.61804 -13.46556 -13.26434 -13.18449 -13.10340 -12.95758 -12.79529 -12.68527 -12.56202 -12.51663 -12.33587 -12.11714 -12.05224 -11.82146 -11.77517 -11.68299 -11.56438 -11.48236 -11.20039 -11.06520 -10.63282 -10.03320 -9.37859 -9.05980 -8.20844 -6.35516 1.16030 1.36152 1.39243 1.49442 1.78781 1.87863 2.27224 2.43410 3.08167 3.11049 3.68325 3.70198 3.78566 3.88798 3.95532 4.11112 4.17092 4.25228 4.27524 4.31537 4.36222 4.36850 4.44151 4.51242 4.60365 4.65244 4.66484 4.70761 4.72953 4.73351 4.80376 4.85450 4.95332 4.97431 5.03782 5.05143 5.11865 5.21162 5.23837 5.26236 5.27362 5.32352 5.39190 5.44762 5.60993 5.61717 5.89724 6.08075 6.14303 6.35366 6.70780 6.72394 6.85718 7.30848 7.57539 8.85929 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.002281 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.269529 B =12274.849464 C =13679.190816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.460 3.540 4 O -0.543 6.543 5 C -0.114 4.114 6 C -0.093 4.093 7 C -0.078 4.078 8 C -0.107 4.107 9 C 0.054 3.946 10 N -0.535 5.535 11 C 0.077 3.923 12 H 0.122 0.878 13 C -0.178 4.178 14 C 0.501 3.499 15 O -0.574 6.574 16 N -0.610 5.610 17 C 0.070 3.930 18 C 0.262 3.738 19 C -0.537 4.537 20 H 0.052 0.948 21 C 0.005 3.995 22 N -0.929 5.929 23 Si 0.968 3.032 24 H -0.263 1.263 25 H -0.282 1.282 26 H -0.273 1.273 27 C 0.030 3.970 28 C -0.106 4.106 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.058 0.942 32 H 0.131 0.869 33 H 0.115 0.885 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.100 0.900 47 H 0.021 0.979 48 H -0.005 1.005 49 H 0.266 0.734 50 H 0.034 0.966 51 H 0.082 0.918 52 H 0.047 0.953 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 0.968 -22.116 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.305 3.695 4 O -0.433 6.433 5 C -0.151 4.151 6 C -0.131 4.131 7 C -0.096 4.096 8 C -0.145 4.145 9 C -0.073 4.073 10 N -0.260 5.260 11 C -0.035 4.035 12 H 0.140 0.860 13 C -0.237 4.237 14 C 0.290 3.710 15 O -0.455 6.455 16 N -0.342 5.342 17 C -0.072 4.072 18 C 0.140 3.860 19 C -0.575 4.575 20 H 0.071 0.929 21 C -0.194 4.194 22 N -0.569 5.569 23 Si 0.792 3.208 24 H -0.188 1.188 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.098 4.098 28 C -0.144 4.144 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.133 0.867 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.118 0.882 47 H 0.039 0.961 48 H 0.013 0.987 49 H 0.075 0.925 50 H 0.052 0.948 51 H 0.100 0.900 52 H 0.066 0.934 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.745 1.151 -21.206 26.437 hybrid contribution 0.608 -1.098 0.415 1.322 sum -15.136 0.053 -20.791 25.717 Atomic orbital electron populations 1.23511 0.75131 1.05562 1.02382 1.86521 1.24841 1.33329 1.83764 1.24422 0.93259 0.80897 0.70936 1.90655 1.68239 1.37392 1.46984 1.21605 0.85387 1.00482 1.07589 1.21362 0.94993 0.93789 1.02962 1.21176 0.93859 0.97015 0.97592 1.21602 0.94310 0.96041 1.02541 1.22216 0.95972 1.00282 0.88805 1.61849 1.10748 1.18109 1.35253 1.21582 0.89328 1.02033 0.90559 0.86029 1.22450 1.01406 1.00513 0.99338 1.21217 0.80780 0.79982 0.89054 1.90467 1.53923 1.38639 1.62430 1.48146 1.16544 1.53792 1.15719 1.22105 0.93622 0.95486 0.95975 1.18705 0.93829 0.94608 0.78846 1.21662 1.37134 1.05405 0.93316 0.92943 1.25880 0.96923 1.01697 0.94874 1.70058 1.47639 1.40586 0.98635 0.85414 0.79047 0.78857 0.77478 1.18827 1.20732 1.19744 1.22599 0.96805 0.88079 1.02279 1.21643 0.93921 1.00967 0.97847 0.91837 0.85267 0.92364 0.85117 0.86662 0.92743 0.90703 0.89552 0.92590 0.89243 0.89654 0.93302 0.88310 0.90783 0.93033 0.91416 0.91681 0.88159 0.96065 0.98704 0.92481 0.94780 0.90044 0.93390 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.37 -6.48 10.57 -51.43 -0.54 -7.02 16 3 C 0.46 8.97 7.96 71.24 0.57 9.53 16 4 O -0.54 -13.89 15.73 21.97 0.35 -13.54 16 5 C -0.11 -1.62 5.57 29.85 0.17 -1.46 16 6 C -0.09 -1.54 3.98 30.60 0.12 -1.42 16 7 C -0.08 -1.32 2.25 -10.71 -0.02 -1.34 16 8 C -0.11 -1.84 5.38 30.64 0.16 -1.68 16 9 C 0.05 1.02 5.03 86.32 0.43 1.45 16 10 N -0.53 -14.86 4.55 -875.53 -3.99 -18.84 16 11 C 0.08 2.18 1.93 44.17 0.09 2.26 16 12 H 0.12 2.84 7.46 -2.39 -0.02 2.82 16 13 C -0.18 -4.06 8.07 71.98 0.58 -3.48 16 14 C 0.50 20.91 6.83 87.66 0.60 21.50 16 15 O -0.57 -29.64 12.98 -3.03 -0.04 -29.68 16 16 N -0.61 -26.05 2.86 -851.15 -2.43 -28.48 16 17 C 0.07 2.08 9.87 127.77 1.26 3.34 16 18 C 0.26 14.33 5.15 85.63 0.44 14.77 16 19 C -0.54 -31.14 9.39 25.60 0.24 -30.90 16 20 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 21 C 0.00 0.29 5.46 84.66 0.46 0.75 16 22 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 23 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 27 C 0.03 0.88 4.54 86.33 0.39 1.27 16 28 C -0.11 -2.52 5.08 30.65 0.16 -2.36 16 29 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 32 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.12 1.57 6.64 -2.39 -0.02 1.56 16 34 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 35 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 36 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 40 H 0.05 0.79 6.92 -2.39 -0.02 0.77 16 41 H 0.10 1.55 7.07 -2.39 -0.02 1.54 16 42 H 0.07 1.68 5.88 -2.39 -0.01 1.67 16 43 H 0.05 1.35 6.11 -2.39 -0.01 1.33 16 44 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 2.03 8.11 -2.39 -0.02 2.01 16 46 H 0.10 2.23 4.34 -2.38 -0.01 2.22 16 47 H 0.02 1.18 8.07 -2.38 -0.02 1.16 16 48 H -0.01 -0.33 7.49 -2.39 -0.02 -0.35 16 49 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 50 H 0.03 0.92 6.44 -2.39 -0.02 0.90 16 51 H 0.08 3.30 4.76 -9.07 -0.04 3.26 16 52 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 53 H 0.07 1.57 6.71 -2.39 -0.02 1.55 16 Total: -1.00 -79.80 407.51 3.36 -76.45 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.86 Total: 16.67 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 6.84 Total: 13.78 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -6.13 Total: -103.88 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -0.24 Total: -50.24 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -79.80 3.36 -76.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531479385.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.754 kcal (2) G-P(sol) polarization free energy of solvation -79.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds