Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46573 * 2 1 4 4 C 1.46501 * 119.99976 * 269.99206 * 3 2 1 5 5 C 1.50698 * 109.47457 * 270.00558 * 4 3 2 6 6 H 1.07998 * 119.99934 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99936 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00483 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00080 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46995 * 60.00093 * 9 7 5 11 11 H 1.48491 * 109.47093 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46988 * 300.00340 * 9 7 5 13 13 C 1.34779 * 119.99959 * 90.00209 * 3 2 1 14 14 O 1.21287 * 119.99738 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00045 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47094 * 179.97438 * 15 13 3 17 17 C 1.46897 * 111.00294 * 180.02562 * 16 15 13 18 18 H 1.09009 * 109.46828 * 35.00203 * 17 16 15 19 19 C 1.50706 * 109.47479 * 275.00802 * 17 16 15 20 20 O 1.20826 * 119.99287 * 359.97438 * 19 17 16 21 21 O 1.34228 * 120.00394 * 179.97438 * 19 17 16 22 22 C 1.45198 * 116.99985 * 179.97438 * 21 19 17 23 23 C 1.52995 * 109.47427 * 155.00414 * 17 16 15 24 24 C 1.53004 * 109.46810 * 299.99938 * 23 17 16 25 25 C 1.53007 * 109.46859 * 179.97438 * 24 23 17 26 26 C 1.53000 * 109.46734 * 60.00572 * 25 24 23 27 27 C 1.53001 * 109.47167 * 299.99678 * 26 25 24 28 28 C 1.53000 * 109.47019 * 180.02562 * 23 17 16 29 29 H 1.09000 * 109.46923 * 60.00663 * 1 2 3 30 30 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47334 * 300.00304 * 1 2 3 32 32 H 1.08997 * 109.47334 * 239.99696 * 2 1 3 33 33 H 1.08996 * 109.46490 * 119.99508 * 2 1 3 34 34 H 1.09005 * 109.46782 * 30.00965 * 4 3 2 35 35 H 1.08997 * 109.46696 * 150.00285 * 4 3 2 36 36 H 0.96999 * 120.00659 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47052 * 60.00398 * 15 13 3 38 38 H 1.09000 * 109.47559 * 300.00301 * 15 13 3 39 39 H 1.00899 * 110.99827 * 56.05089 * 16 15 13 40 40 H 1.09002 * 109.47379 * 299.99940 * 22 21 19 41 41 H 1.09001 * 109.46782 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.47085 * 60.00143 * 22 21 19 43 43 H 1.08999 * 109.47289 * 60.00096 * 23 17 16 44 44 H 1.08999 * 109.47324 * 300.00137 * 24 23 17 45 45 H 1.09002 * 109.46962 * 60.00337 * 24 23 17 46 46 H 1.09000 * 109.47061 * 300.00595 * 25 24 23 47 47 H 1.08999 * 109.47046 * 180.02562 * 25 24 23 48 48 H 1.09004 * 109.46903 * 179.97438 * 26 25 24 49 49 H 1.08999 * 109.47310 * 59.99630 * 26 25 24 50 50 H 1.08999 * 109.46966 * 300.00162 * 27 26 25 51 51 H 1.08998 * 109.47383 * 180.02562 * 27 26 25 52 52 H 1.09004 * 109.47443 * 299.99552 * 28 23 17 53 53 H 1.09000 * 109.47327 * 60.00301 * 28 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 3.3492 3.1257 -3.6181 9 14 5.9136 2.0968 -3.4167 10 1 6.1419 0.6401 -3.5934 11 1 6.1611 2.7967 -4.7028 12 1 6.8407 2.6212 -2.3820 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3101 2.2062 3.5888 17 6 2.0769 1.5459 4.8802 18 1 2.3279 0.4883 4.7981 19 6 0.6264 1.6896 5.2632 20 8 -0.1347 2.2817 4.5352 21 8 0.1802 1.1598 6.4129 22 6 -1.2283 1.3374 6.7176 23 6 2.9541 2.1966 5.9515 24 6 4.4267 2.0506 5.5627 25 6 5.3040 2.7019 6.6338 26 6 5.0612 2.0146 7.9790 27 6 3.5886 2.1606 8.3678 28 6 2.7116 1.5085 7.2963 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6752 3.5162 -4.4440 37 1 2.6212 0.4188 2.5302 38 1 0.9432 1.0125 2.5299 39 1 1.7856 3.0655 3.5218 40 1 -1.4557 2.4017 6.7779 41 1 -1.4562 0.8629 7.6722 42 1 -1.8304 0.8811 5.9318 43 1 2.7031 3.2542 6.0336 44 1 4.6777 0.9931 5.4806 45 1 4.5998 2.5406 4.6045 46 1 5.0528 3.7594 6.7155 47 1 6.3530 2.5983 6.3566 48 1 5.6865 2.4783 8.7420 49 1 5.3123 0.9571 7.8973 50 1 3.3375 3.2181 8.4495 51 1 3.4157 1.6713 9.3264 52 1 1.6625 1.6121 7.5736 53 1 2.9630 0.4511 7.2140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543546934.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -159.400106 kcal Electronic energy + Delta-G solvation = -31414.707235 eV Core-core repulsion = 27284.832869 eV Total energy + Delta-G solvation = -4129.874366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.98919 -40.68345 -39.42237 -37.92560 -37.00312 -36.26671 -34.89853 -32.75874 -31.62448 -31.47695 -29.71769 -29.04461 -27.84742 -25.92558 -24.62613 -23.90014 -23.31610 -22.95528 -21.51805 -20.67251 -19.94043 -18.93652 -18.61124 -18.27041 -17.75285 -17.54500 -17.25251 -16.51574 -16.23158 -15.91512 -15.66466 -15.48613 -14.96732 -14.81904 -14.71597 -14.66899 -14.44885 -14.36282 -14.15924 -13.69759 -13.48832 -13.38476 -13.21630 -13.08292 -13.03687 -13.00231 -12.84651 -12.80543 -12.64363 -12.51230 -12.16469 -11.99514 -11.93356 -11.88721 -11.76359 -11.72688 -11.59810 -11.27824 -10.93026 -10.75912 -10.63567 -10.57542 -9.73911 -9.42559 -8.21268 -6.36395 1.03408 1.37001 1.42192 1.49161 1.67034 1.83976 2.20936 2.41578 2.97227 3.08227 3.56304 3.66188 3.80679 3.87882 4.02737 4.07247 4.11400 4.22302 4.31529 4.32227 4.35294 4.39943 4.44999 4.48919 4.52343 4.61053 4.68990 4.71387 4.74246 4.76696 4.88478 4.95215 4.97853 5.02859 5.08578 5.20702 5.26818 5.32526 5.33512 5.34479 5.36783 5.39078 5.56399 5.57576 5.63367 5.66501 5.69893 5.87316 5.98737 6.07352 6.62837 6.71048 6.80399 7.29280 7.49760 8.85833 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.003014 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.737487 B = 9287.045445 C =11047.390026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.604 5.604 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.969 3.031 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.497 3.503 14 O -0.585 6.585 15 C 0.053 3.947 16 N -0.648 5.648 17 C 0.103 3.897 18 H 0.142 0.858 19 C 0.437 3.563 20 O -0.543 6.543 21 O -0.342 6.342 22 C 0.022 3.978 23 C -0.061 4.061 24 C -0.101 4.101 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.118 4.118 29 H 0.037 0.963 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.020 0.980 35 H -0.008 1.008 36 H 0.267 0.733 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.349 0.651 40 H 0.055 0.945 41 H 0.135 0.865 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.052 0.948 51 H 0.075 0.925 52 H 0.082 0.918 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.560 -11.306 27.166 29.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.336 5.336 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.793 3.207 10 H -0.182 1.182 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.285 3.715 14 O -0.465 6.465 15 C -0.079 4.079 16 N -0.280 5.280 17 C -0.009 4.009 18 H 0.160 0.840 19 C 0.279 3.721 20 O -0.433 6.433 21 O -0.257 6.257 22 C -0.071 4.071 23 C -0.080 4.080 24 C -0.139 4.139 25 C -0.158 4.158 26 C -0.154 4.154 27 C -0.152 4.152 28 C -0.156 4.156 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.038 0.962 35 H 0.010 0.990 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.169 0.831 40 H 0.074 0.926 41 H 0.153 0.847 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.071 0.929 51 H 0.094 0.906 52 H 0.100 0.900 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.969 -10.596 26.762 29.055 hybrid contribution -0.656 0.784 -1.150 1.538 sum -4.625 -9.812 25.612 27.814 Atomic orbital electron populations 1.22154 0.95087 1.03438 1.01233 1.21749 0.94882 0.81405 1.04181 1.48261 1.64016 1.15160 1.06144 1.18669 0.95394 0.91315 0.80346 1.21686 0.97772 1.32065 1.06477 0.92614 1.25894 1.02530 0.94441 0.96428 1.70054 1.37928 1.34260 1.14829 0.85445 0.78853 0.79109 0.77270 1.18222 1.20462 1.20293 1.21083 0.77375 0.86660 0.86355 1.90645 1.47430 1.20532 1.87855 1.21939 1.01850 0.96591 0.87479 1.60578 1.60739 1.07071 0.99578 1.21903 0.85518 1.03134 0.90368 0.84011 1.25561 0.93248 0.74479 0.78812 1.90705 1.58869 1.40948 1.52736 1.86638 1.29633 1.71024 1.38413 1.23542 0.77560 1.02618 1.03392 1.21005 0.94812 0.99257 0.92956 1.21399 0.92582 1.01515 0.98392 1.21546 0.99387 0.99452 0.95446 1.21544 0.96576 1.01081 0.96215 1.21507 0.94649 1.00556 0.98509 1.21819 1.01102 1.00226 0.92443 0.94341 0.88395 0.93093 0.90565 0.87963 0.96173 0.98955 0.92449 0.85289 0.90919 0.83078 0.92641 0.84723 0.92390 0.92372 0.91019 0.92806 0.93043 0.92025 0.91739 0.91267 0.92885 0.90617 0.90000 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 10.24 71.98 0.74 -3.52 16 2 C 0.10 3.11 5.93 86.38 0.51 3.62 16 3 N -0.60 -26.42 2.46 -826.14 -2.03 -28.45 16 4 C 0.26 14.77 5.16 85.63 0.44 15.21 16 5 C -0.54 -31.94 9.39 25.60 0.24 -31.70 16 6 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -57.78 13.29 21.44 0.28 -57.49 16 9 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.50 21.56 7.71 87.66 0.68 22.24 16 14 O -0.58 -31.73 15.78 -3.05 -0.05 -31.78 16 15 C 0.05 1.57 4.41 85.56 0.38 1.94 16 16 N -0.65 -18.74 4.96 -499.47 -2.48 -21.22 16 17 C 0.10 2.10 2.11 44.17 0.09 2.19 16 18 H 0.14 2.15 7.80 -2.38 -0.02 2.13 16 19 C 0.44 9.70 7.02 71.24 0.50 10.20 16 20 O -0.54 -16.20 15.06 21.96 0.33 -15.87 16 21 O -0.34 -5.73 7.48 -51.40 -0.38 -6.12 16 22 C 0.02 0.28 10.56 113.37 1.20 1.48 16 23 C -0.06 -1.12 1.95 -10.79 -0.02 -1.14 16 24 C -0.10 -1.98 5.05 30.60 0.15 -1.83 16 25 C -0.12 -2.08 5.92 30.60 0.18 -1.90 16 26 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 27 C -0.11 -1.43 5.93 30.61 0.18 -1.24 16 28 C -0.12 -1.59 4.69 30.61 0.14 -1.45 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.34 7.22 -2.39 -0.02 1.32 16 32 H 0.08 2.48 8.07 -2.39 -0.02 2.46 16 33 H 0.10 2.36 6.44 -2.39 -0.02 2.35 16 34 H 0.02 1.15 8.07 -2.38 -0.02 1.13 16 35 H -0.01 -0.50 7.42 -2.39 -0.02 -0.52 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.13 2.98 7.31 -2.39 -0.02 2.96 16 38 H 0.07 1.96 6.67 -2.39 -0.02 1.95 16 39 H 0.35 12.01 7.45 -89.69 -0.67 11.34 16 40 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 41 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.81 8.13 -2.38 -0.02 0.79 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 1.41 7.60 -2.39 -0.02 1.39 16 46 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 49 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 52 H 0.08 1.13 5.33 -2.38 -0.01 1.12 16 53 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -79.44 416.80 3.98 -75.47 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.22 Total: 24.17 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.06 Total: 13.56 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -4.22 Total: -107.16 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -0.10 Total: -53.77 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -79.44 3.98 -75.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543546934.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.932 kcal (2) G-P(sol) polarization free energy of solvation -79.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds