Wall clock time and date at job start Sat Apr 11 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47256 * 2 1 4 4 O 1.42894 * 109.47263 * 239.99247 * 2 1 3 5 5 C 1.42900 * 113.99939 * 90.00280 * 4 2 1 6 6 C 1.53008 * 109.47157 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.48135 * 304.98149 * 6 5 4 8 8 C 1.53091 * 109.47823 * 184.93996 * 6 5 4 9 9 C 1.53178 * 109.16033 * 182.41003 * 8 6 5 10 10 C 1.53176 * 109.03609 * 56.98548 * 9 8 6 11 11 C 1.53093 * 109.15983 * 303.01604 * 10 9 8 12 12 O 1.42897 * 109.41489 * 57.61190 * 11 10 9 13 13 C 1.50705 * 109.46820 * 119.99653 * 2 1 3 14 14 O 1.21277 * 120.00198 * 114.99987 * 13 2 1 15 15 N 1.34783 * 119.99966 * 294.72054 * 13 2 1 16 16 C 1.46495 * 120.00195 * 180.27620 * 15 13 2 17 17 C 1.53049 * 109.45996 * 275.07102 * 16 15 13 18 18 C 1.53193 * 109.30869 * 178.61411 * 17 16 15 19 19 N 1.46919 * 108.77683 * 54.63925 * 18 17 16 20 20 C 1.36939 * 120.63219 * 126.41427 * 19 18 17 21 21 H 1.08002 * 119.99651 * 207.65552 * 20 19 18 22 22 C 1.38811 * 120.00199 * 27.65110 * 20 19 18 23 23 N 1.31621 * 119.99793 * 17.38128 * 22 20 19 24 24 Si 1.86793 * 120.00069 * 197.37992 * 22 20 19 25 25 H 1.48506 * 109.47085 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47188 * 120.00153 * 24 22 20 27 27 H 1.48500 * 109.47095 * 240.00051 * 24 22 20 28 28 C 1.46928 * 118.73717 * 306.38329 * 19 18 17 29 29 C 1.53037 * 109.46282 * 155.00374 * 16 15 13 30 30 H 1.09005 * 109.47200 * 60.00346 * 1 2 3 31 31 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47616 * 300.00882 * 1 2 3 33 33 H 1.08999 * 109.47236 * 299.99902 * 5 4 2 34 34 H 1.09002 * 109.46917 * 60.00321 * 5 4 2 35 35 H 1.08992 * 109.52870 * 302.31637 * 8 6 5 36 36 H 1.09003 * 109.51909 * 62.50645 * 8 6 5 37 37 H 1.09003 * 109.54241 * 297.11780 * 9 8 6 38 38 H 1.09004 * 109.54109 * 176.85052 * 9 8 6 39 39 H 1.09003 * 109.52192 * 183.11354 * 10 9 8 40 40 H 1.08993 * 109.52768 * 62.92298 * 10 9 8 41 41 H 1.08998 * 109.48472 * 297.62863 * 11 10 9 42 42 H 1.09000 * 109.47684 * 177.59128 * 11 10 9 43 43 H 0.97005 * 119.99686 * 0.27914 * 15 13 2 44 44 H 1.08999 * 109.45787 * 35.02547 * 16 15 13 45 45 H 1.08997 * 109.49758 * 298.56800 * 17 16 15 46 46 H 1.08997 * 109.49463 * 58.66236 * 17 16 15 47 47 H 1.09000 * 109.58299 * 294.84298 * 18 17 16 48 48 H 1.09003 * 109.57780 * 174.42429 * 18 17 16 49 49 H 0.96995 * 119.99831 * 180.02562 * 23 22 20 50 50 H 1.08996 * 109.58984 * 293.82563 * 28 19 18 51 51 H 1.09000 * 109.58805 * 173.39825 * 28 19 18 52 52 H 1.09003 * 109.49643 * 301.33665 * 29 16 15 53 53 H 1.09006 * 109.49663 * 61.43308 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6738 -1.1666 5 6 2.2001 0.1827 -2.2940 6 6 2.7092 -0.6410 -3.4787 7 1 3.6083 -1.1827 -3.1852 8 6 3.0339 0.2927 -4.6477 9 6 3.4852 -0.5438 -5.8489 10 6 2.3853 -1.5511 -6.1978 11 6 2.0856 -2.4136 -4.9689 12 8 1.7017 -1.5717 -3.8799 13 6 2.0322 -0.7104 1.2306 14 8 2.6528 -1.7466 1.1217 15 7 1.7966 -0.1911 2.4518 16 6 2.2900 -0.8784 3.6477 17 6 1.2847 -1.9524 4.0699 18 6 1.8202 -2.6921 5.2999 19 7 2.1272 -1.7081 6.3469 20 6 1.5984 -1.8382 7.6033 21 1 1.4364 -0.9625 8.2143 22 6 1.2706 -3.0956 8.0917 23 7 1.7656 -4.1730 7.5203 24 14 0.1271 -3.2584 9.5597 25 1 -0.2895 -1.9076 10.0149 26 1 -1.0731 -4.0402 9.1679 27 1 0.8344 -3.9568 10.6629 28 6 3.0130 -0.5823 6.0203 29 6 2.4642 0.1338 4.7822 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.2538 0.6544 -2.5589 34 1 2.9320 0.9511 -2.0450 35 1 2.1452 0.8642 -4.9152 36 1 3.8332 0.9748 -4.3578 37 1 4.4020 -1.0773 -5.5978 38 1 3.6645 0.1105 -6.7021 39 1 2.7208 -2.1877 -7.0165 40 1 1.4835 -1.0169 -6.4965 41 1 2.9767 -2.9784 -4.6951 42 1 1.2738 -3.1038 -5.1985 43 1 1.3002 0.6378 2.5389 44 1 3.2497 -1.3461 3.4277 45 1 0.3317 -1.4829 4.3139 46 1 1.1435 -2.6598 3.2528 47 1 2.7259 -3.2366 5.0331 48 1 1.0657 -3.3896 5.6638 49 1 1.5362 -5.0516 7.8613 50 1 4.0160 -0.9547 5.8124 51 1 3.0456 0.1124 6.8597 52 1 3.1625 0.9112 4.4722 53 1 1.5001 0.5837 5.0196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609329615.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:28 Heat of formation + Delta-G solvation = -144.734023 kcal Electronic energy + Delta-G solvation = -30343.102852 eV Core-core repulsion = 26213.864455 eV Total energy + Delta-G solvation = -4129.238397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.22174 -40.43289 -39.25372 -38.26945 -36.01631 -34.56320 -34.16569 -33.40526 -32.20865 -31.63600 -30.82094 -27.99284 -27.08318 -25.47693 -24.86727 -23.92471 -23.44681 -23.11234 -21.44868 -21.20896 -20.85169 -18.92116 -18.22884 -18.05642 -17.53034 -16.97843 -16.90965 -16.67221 -16.26993 -15.86983 -15.58234 -15.50383 -15.36617 -15.32851 -15.01217 -14.77433 -14.54751 -14.31092 -14.07243 -13.69427 -13.60507 -13.51354 -13.30896 -13.19450 -13.04324 -12.77347 -12.66285 -12.57580 -12.47514 -12.18130 -12.12439 -12.02376 -11.97759 -11.84809 -11.60238 -11.54278 -11.37656 -11.28139 -10.95047 -10.59677 -10.46826 -10.38663 -10.01974 -8.72705 -7.87617 -5.33781 1.46873 1.48598 1.59480 1.60002 1.85405 2.51536 2.77547 2.85707 3.28341 3.61318 3.70231 3.81562 3.88907 3.90839 3.92574 3.96165 4.02813 4.05145 4.09798 4.17433 4.29970 4.32961 4.40482 4.47124 4.48567 4.64215 4.65383 4.66207 4.72528 4.79704 4.80714 4.85908 4.87506 4.92545 5.04270 5.04934 5.07764 5.10676 5.13010 5.15787 5.21445 5.31519 5.36567 5.45585 5.53650 5.63922 5.68690 6.09897 6.30937 6.38017 6.63361 7.12555 7.30015 7.83844 8.36705 9.19683 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.001864 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.941602 B =15018.105637 C =15367.550535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.077 3.923 3 H 0.125 0.875 4 O -0.387 6.387 5 C 0.062 3.938 6 C 0.086 3.914 7 H 0.048 0.952 8 C -0.141 4.141 9 C -0.124 4.124 10 C -0.152 4.152 11 C 0.051 3.949 12 O -0.398 6.398 13 C 0.505 3.495 14 O -0.579 6.579 15 N -0.704 5.704 16 C 0.162 3.838 17 C -0.130 4.130 18 C 0.182 3.818 19 N -0.609 5.609 20 C -0.258 4.258 21 H 0.076 0.924 22 C -0.058 4.058 23 N -0.940 5.940 24 Si 0.970 3.030 25 H -0.260 1.260 26 H -0.293 1.293 27 H -0.294 1.294 28 C 0.140 3.860 29 C -0.120 4.120 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.098 0.902 43 H 0.417 0.583 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.039 0.961 47 H -0.014 1.014 48 H 0.055 0.945 49 H 0.249 0.751 50 H 0.010 0.990 51 H 0.070 0.930 52 H 0.094 0.906 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 16.953 -27.442 32.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 H 0.143 0.857 4 O -0.306 6.306 5 C -0.014 4.014 6 C 0.028 3.972 7 H 0.066 0.934 8 C -0.178 4.178 9 C -0.161 4.161 10 C -0.190 4.190 11 C -0.026 4.026 12 O -0.317 6.317 13 C 0.291 3.709 14 O -0.457 6.457 15 N -0.357 5.357 16 C 0.057 3.943 17 C -0.171 4.171 18 C 0.055 3.945 19 N -0.332 5.332 20 C -0.389 4.389 21 H 0.094 0.906 22 C -0.252 4.252 23 N -0.587 5.587 24 Si 0.798 3.202 25 H -0.184 1.184 26 H -0.220 1.220 27 H -0.222 1.222 28 C 0.014 3.986 29 C -0.159 4.159 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.116 0.884 43 H 0.255 0.745 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.058 0.942 47 H 0.004 0.996 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.028 0.972 51 H 0.089 0.911 52 H 0.112 0.888 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.370 15.885 -27.387 31.663 hybrid contribution -0.299 -0.741 0.862 1.176 sum -0.669 15.143 -26.525 30.551 Atomic orbital electron populations 1.22213 0.92009 1.02911 1.05007 1.22010 0.96114 0.96871 0.83421 0.85737 1.88098 1.86860 1.35784 1.19816 1.22872 1.01789 0.92391 0.84344 1.22208 0.90859 0.90690 0.93420 0.93433 1.22105 1.03197 0.98115 0.94432 1.21619 0.98069 0.98109 0.98313 1.22175 0.99949 0.98887 0.97945 1.22738 1.00827 0.92613 0.86397 1.87964 1.40934 1.50843 1.51994 1.21194 0.78907 0.85109 0.85645 1.90716 1.42050 1.25713 1.87243 1.45926 1.57476 1.27906 1.04419 1.20656 0.96112 0.93215 0.84277 1.22302 0.99320 0.98089 0.97345 1.20460 0.96517 0.90915 0.86569 1.44361 1.53825 1.27067 1.07977 1.19624 1.34477 0.92102 0.92652 0.90602 1.25897 1.02315 0.95722 1.01304 1.70227 1.46088 0.97571 1.44771 0.85167 0.78228 0.78057 0.78754 1.18400 1.22016 1.22150 1.21068 0.91638 0.89674 0.96231 1.22133 1.02973 0.97053 0.93743 0.89184 0.93780 0.88722 0.90791 0.89313 0.90087 0.88940 0.91935 0.89492 0.89433 0.90899 0.93807 0.88429 0.74535 0.92914 0.91628 0.94204 0.99614 0.92653 0.94238 0.97236 0.91135 0.88768 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.48 71.98 0.68 -2.10 16 2 C 0.08 1.61 3.13 29.85 0.09 1.71 16 3 H 0.13 1.53 7.79 -2.39 -0.02 1.51 16 4 O -0.39 -10.34 9.49 -125.60 -1.19 -11.53 16 5 C 0.06 1.07 5.41 71.98 0.39 1.46 16 6 C 0.09 1.60 2.93 30.63 0.09 1.69 16 7 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 8 C -0.14 -1.58 5.42 30.68 0.17 -1.41 16 9 C -0.12 -1.26 6.03 30.71 0.19 -1.08 16 10 C -0.15 -1.74 6.14 30.68 0.19 -1.55 16 11 C 0.05 0.87 6.84 72.01 0.49 1.36 16 12 O -0.40 -9.20 10.37 -144.37 -1.50 -10.70 16 13 C 0.50 15.34 7.14 87.66 0.63 15.97 16 14 O -0.58 -24.84 16.17 15.97 0.26 -24.58 16 15 N -0.70 -18.24 5.04 -442.40 -2.23 -20.47 16 16 C 0.16 5.58 2.42 45.02 0.11 5.69 16 17 C -0.13 -5.40 5.65 30.68 0.17 -5.22 16 18 C 0.18 9.44 5.31 86.36 0.46 9.90 16 19 N -0.61 -30.90 2.99 -699.11 -2.09 -32.99 16 20 C -0.26 -14.18 9.59 84.03 0.81 -13.37 16 21 H 0.08 3.95 7.89 -2.91 -0.02 3.93 16 22 C -0.06 -3.27 4.91 84.86 0.42 -2.85 16 23 N -0.94 -57.77 11.19 21.65 0.24 -57.52 16 24 Si 0.97 45.31 29.59 68.60 2.03 47.34 16 25 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 C 0.14 5.61 6.52 86.36 0.56 6.17 16 29 C -0.12 -3.60 5.55 30.67 0.17 -3.43 16 30 H 0.09 1.15 7.87 -2.38 -0.02 1.13 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.16 7.94 -2.38 -0.02 1.14 16 33 H 0.07 1.03 7.87 -2.39 -0.02 1.01 16 34 H 0.09 1.04 8.09 -2.39 -0.02 1.03 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.42 7.06 8.40 -92.70 -0.78 6.28 16 44 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 45 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 47 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 48 H 0.06 3.23 6.04 -2.39 -0.01 3.21 16 49 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 50 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.07 2.64 7.93 -2.39 -0.02 2.63 16 52 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 53 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -80.77 414.57 1.22 -79.56 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.09 Total: 17.97 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 5.61 Total: 12.93 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -4.08 Total: -110.98 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -2.43 Total: -46.81 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -80.77 1.22 -79.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609329615.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.179 kcal (2) G-P(sol) polarization free energy of solvation -80.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds