Wall clock time and date at job start Sat Apr 11 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47085 * 2 1 4 4 C 1.46511 * 120.00054 * 270.00365 * 3 2 1 5 5 C 1.50697 * 109.46763 * 269.99830 * 4 3 2 6 6 H 1.07996 * 120.00238 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99306 * 179.97438 * 5 4 3 8 8 N 1.31506 * 120.00265 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99462 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47297 * 90.00098 * 9 7 5 11 11 H 1.48506 * 109.46928 * 210.00214 * 9 7 5 12 12 H 1.48500 * 109.47363 * 330.00061 * 9 7 5 13 13 C 1.34774 * 120.00243 * 90.00411 * 3 2 1 14 14 O 1.21278 * 120.00301 * 180.02562 * 13 3 2 15 15 C 1.50708 * 119.99685 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.46987 * 180.02562 * 15 13 3 17 17 C 1.34230 * 117.00066 * 180.02562 * 16 15 13 18 18 O 1.20827 * 119.99653 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99863 * 180.27519 * 17 16 15 20 20 H 1.08997 * 109.47183 * 59.72502 * 19 17 16 21 21 C 1.53002 * 109.47066 * 299.71962 * 19 17 16 22 22 C 1.52991 * 109.47496 * 305.95854 * 21 19 17 23 23 C 1.53001 * 109.46879 * 65.96168 * 21 19 17 24 24 N 1.46904 * 109.46708 * 179.72463 * 19 17 16 25 25 C 1.48534 * 110.99703 * 174.94279 * 24 19 17 26 26 C 1.54944 * 103.22513 * 159.72236 * 25 24 19 27 27 C 1.54596 * 102.91682 * 322.58202 * 26 25 24 28 28 C 1.47902 * 110.99999 * 292.33951 * 24 19 17 29 29 H 1.09006 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47034 * 299.99551 * 1 2 3 31 31 H 1.08998 * 109.47151 * 59.99733 * 1 2 3 32 32 H 1.08999 * 109.46575 * 240.00615 * 2 1 3 33 33 H 1.08998 * 109.47151 * 120.00267 * 2 1 3 34 34 H 1.08994 * 109.46836 * 30.00221 * 4 3 2 35 35 H 1.09001 * 109.46908 * 149.99952 * 4 3 2 36 36 H 0.97006 * 119.99935 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.46677 * 60.00187 * 15 13 3 38 38 H 1.08996 * 109.46958 * 300.00130 * 15 13 3 39 39 H 1.09005 * 109.46800 * 185.95909 * 21 19 17 40 40 H 1.08997 * 109.47375 * 65.25733 * 22 21 19 41 41 H 1.09001 * 109.47460 * 185.26066 * 22 21 19 42 42 H 1.09010 * 109.47056 * 305.25997 * 22 21 19 43 43 H 1.08996 * 109.47271 * 59.99650 * 23 21 19 44 44 H 1.08996 * 109.47162 * 179.97438 * 23 21 19 45 45 H 1.09000 * 109.46517 * 299.99577 * 23 21 19 46 46 H 1.09000 * 110.66933 * 278.15288 * 25 24 19 47 47 H 1.08995 * 110.66935 * 41.28557 * 25 24 19 48 48 H 1.09002 * 110.72035 * 204.22994 * 26 25 24 49 49 H 1.08994 * 110.88061 * 81.01647 * 26 25 24 50 50 H 1.09004 * 110.31207 * 263.03522 * 27 26 25 51 51 H 1.09008 * 110.30714 * 140.87835 * 27 26 25 52 52 H 1.09003 * 109.91417 * 333.50634 * 28 24 19 53 53 H 1.08996 * 109.91862 * 94.80732 * 28 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1489 2.3898 -2.8781 8 7 3.3489 3.1258 -3.6181 9 14 5.9129 2.0957 -3.4177 10 1 5.9758 0.8746 -4.2604 11 1 6.3920 3.2629 -4.2010 12 1 6.7733 1.9160 -2.2208 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 8 2.3055 2.1960 3.5759 17 6 2.1346 1.7123 4.8163 18 8 1.7361 0.5826 4.9746 19 6 2.4343 2.5800 6.0113 20 1 1.8041 3.4689 5.9822 21 6 3.9061 2.9971 5.9825 22 6 4.7873 1.7511 5.8737 23 6 4.1553 3.9050 4.7765 24 7 2.1627 1.8274 7.2433 25 6 2.5612 2.6078 8.4426 26 6 1.7521 1.9419 9.5839 27 6 0.4044 1.6090 8.9034 28 6 0.7152 1.5648 7.3958 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.5816 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1384 36 1 3.6747 3.5157 -4.4445 37 1 2.6213 0.4186 2.5301 38 1 0.9434 1.0125 2.5299 39 1 4.1493 3.5351 6.8988 40 1 4.6109 1.2640 4.9147 41 1 5.8357 2.0400 5.9471 42 1 4.5429 1.0615 6.6818 43 1 3.5276 4.7926 4.8540 44 1 5.2037 4.2025 4.7562 45 1 3.9122 3.3668 3.8603 46 1 3.6318 2.5138 8.6246 47 1 2.2794 3.6548 8.3314 48 1 1.6055 2.6380 10.4098 49 1 2.2443 1.0331 9.9301 50 1 -0.3291 2.3867 9.1160 51 1 0.0385 0.6399 9.2428 52 1 0.1418 2.3323 6.8759 53 1 0.4721 0.5806 6.9953 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741015431.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:35 Heat of formation + Delta-G solvation = -116.235461 kcal Electronic energy + Delta-G solvation = -31525.511512 eV Core-core repulsion = 27397.508906 eV Total energy + Delta-G solvation = -4128.002606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.00620 -39.37881 -38.62508 -36.26696 -35.87236 -35.28925 -32.84657 -31.49812 -30.18920 -29.39662 -29.10239 -27.24589 -26.88002 -26.05387 -23.10826 -22.84514 -22.17942 -21.74603 -20.77424 -19.61422 -18.63688 -17.62292 -17.14174 -16.76924 -16.36647 -16.28122 -15.97235 -15.73643 -15.13127 -14.98716 -14.33871 -14.19007 -13.90323 -13.78920 -13.49777 -13.34342 -13.23160 -12.97746 -12.71502 -12.60033 -12.37815 -12.26407 -12.07878 -12.05395 -11.89436 -11.64862 -11.62428 -11.49171 -11.23613 -11.01737 -11.00198 -10.95309 -10.92873 -10.80032 -10.77078 -10.57809 -10.43719 -10.24701 -10.14917 -9.66694 -8.98962 -8.73236 -8.45560 -7.75531 -6.06540 -4.11303 2.21601 2.36964 3.25493 3.29551 3.36381 3.41391 3.60441 3.86871 4.28373 4.36183 4.43143 4.57612 4.64462 4.69668 4.80121 4.88971 4.94615 5.07306 5.14400 5.17774 5.22548 5.23818 5.28253 5.36420 5.37737 5.43702 5.49527 5.52575 5.58333 5.67719 5.72550 5.72691 5.78159 5.90281 5.93262 5.94996 5.99185 6.03749 6.18439 6.25266 6.37546 6.44128 6.55758 6.58361 6.64343 6.99558 7.38929 7.47006 7.80270 7.89790 8.19772 8.29761 8.84249 8.99129 9.53756 11.01599 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017248 B = 0.002676 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.027455 B =10461.146025 C =11473.205785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.047 3.953 16 O -0.325 6.325 17 C 0.468 3.532 18 O -0.495 6.495 19 C 0.091 3.909 20 H 0.080 0.920 21 C -0.084 4.084 22 C -0.147 4.147 23 C -0.162 4.162 24 N -0.497 5.497 25 C 0.036 3.964 26 C -0.122 4.122 27 C -0.131 4.131 28 C 0.034 3.966 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.048 0.952 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.073 0.927 52 H 0.041 0.959 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 -3.659 23.936 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.030 4.030 16 O -0.239 6.239 17 C 0.310 3.690 18 O -0.381 6.381 19 C -0.019 4.019 20 H 0.097 0.903 21 C -0.102 4.102 22 C -0.204 4.204 23 C -0.219 4.219 24 N -0.222 5.222 25 C -0.091 4.091 26 C -0.160 4.160 27 C -0.169 4.169 28 C -0.093 4.093 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.066 0.934 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.092 0.908 52 H 0.059 0.941 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.675 -3.763 23.689 24.437 hybrid contribution 0.333 0.361 -0.531 0.723 sum -4.343 -3.401 23.158 23.806 Atomic orbital electron populations 1.22232 0.96567 1.01676 1.02365 1.21503 0.93729 0.83994 1.03010 1.48208 1.63842 1.13384 1.07167 1.19325 0.96458 0.93686 0.77576 1.21420 0.96850 1.32023 1.06330 0.92405 1.24929 0.97901 0.94857 0.96371 1.69927 1.35731 1.33361 1.14295 0.86493 0.84621 0.77681 0.78617 1.20636 1.21069 1.19846 1.19705 0.79684 0.87147 0.84272 1.90710 1.44511 1.17437 1.86739 1.22962 1.02551 0.92852 0.84669 1.86627 1.78350 1.44737 1.14223 1.23367 0.74280 0.87018 0.84351 1.90633 1.41593 1.19476 1.86417 1.21580 0.99635 0.93589 0.87123 0.90264 1.21184 0.90767 0.97692 1.00582 1.21839 0.99017 0.97029 1.02512 1.22090 1.01728 0.99468 0.98661 1.64549 1.16402 1.41369 0.99900 1.23291 1.00931 0.95597 0.89326 1.22467 0.95472 1.01066 0.97021 1.22413 0.97601 1.02220 0.94663 1.22971 0.87510 1.02667 0.96190 0.91908 0.93188 0.91796 0.89439 0.91765 0.94691 0.93717 0.92679 0.88804 0.88985 0.89838 0.92957 0.92337 0.91279 0.92600 0.92156 0.89351 0.89434 0.93353 0.90936 0.90541 0.91542 0.90848 0.94085 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -12.37 2.46 -175.05 -0.43 -12.80 16 4 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 5 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.51 10.64 7.75 -10.98 -0.09 10.55 16 14 O -0.52 -13.08 16.08 -14.10 -0.23 -13.31 16 15 C 0.05 0.77 4.50 36.01 0.16 0.93 16 16 O -0.32 -5.33 6.96 -45.90 -0.32 -5.65 16 17 C 0.47 6.80 5.58 36.00 0.20 7.00 16 18 O -0.49 -7.87 14.66 -18.75 -0.27 -8.15 16 19 C 0.09 1.05 1.53 -68.86 -0.11 0.94 16 20 H 0.08 0.86 7.88 -51.93 -0.41 0.45 16 21 C -0.08 -0.89 2.45 -90.62 -0.22 -1.12 16 22 C -0.15 -1.66 8.69 37.15 0.32 -1.34 16 23 C -0.16 -2.03 8.86 37.16 0.33 -1.70 16 24 N -0.50 -5.20 4.24 -223.88 -0.95 -6.15 16 25 C 0.04 0.28 5.19 -1.89 -0.01 0.27 16 26 C -0.12 -0.81 7.06 -24.87 -0.18 -0.98 16 27 C -0.13 -0.96 6.93 -25.38 -0.18 -1.13 16 28 C 0.03 0.34 5.67 -2.76 -0.02 0.33 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 34 H 0.04 0.90 8.07 -51.93 -0.42 0.49 16 35 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.09 1.42 7.39 -51.93 -0.38 1.04 16 38 H 0.09 1.33 7.18 -51.93 -0.37 0.96 16 39 H 0.08 0.72 6.51 -51.93 -0.34 0.39 16 40 H 0.05 0.70 7.27 -51.93 -0.38 0.32 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.78 7.65 -51.92 -0.40 0.38 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.41 5.50 -51.93 -0.29 1.12 16 46 H 0.09 0.63 7.53 -51.93 -0.39 0.23 16 47 H 0.05 0.35 8.02 -51.93 -0.42 -0.07 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 52 H 0.04 0.41 7.61 -51.93 -0.40 0.01 16 53 H 0.09 1.07 7.29 -51.93 -0.38 0.69 16 LS Contribution 415.36 15.07 6.26 6.26 Total: -1.00 -33.18 415.36 -9.52 -42.70 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -9.43 Total: -0.37 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 0.13 Total: 6.34 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.64 Total: -44.57 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.82 Total: -27.11 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.18 -9.52 -42.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741015431.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.535 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds