Wall clock time and date at job start Sat Apr 11 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47085 * 2 1 4 4 C 1.46511 * 120.00054 * 270.00365 * 3 2 1 5 5 C 1.50697 * 109.46763 * 269.99830 * 4 3 2 6 6 H 1.07996 * 120.00238 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99306 * 179.97438 * 5 4 3 8 8 N 1.31506 * 120.00265 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99462 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47297 * 90.00098 * 9 7 5 11 11 H 1.48506 * 109.46928 * 210.00214 * 9 7 5 12 12 H 1.48500 * 109.47363 * 330.00061 * 9 7 5 13 13 C 1.34774 * 120.00243 * 90.00411 * 3 2 1 14 14 O 1.21278 * 120.00301 * 180.02562 * 13 3 2 15 15 C 1.50708 * 119.99685 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.46987 * 180.02562 * 15 13 3 17 17 C 1.34230 * 117.00066 * 180.02562 * 16 15 13 18 18 O 1.20827 * 119.99653 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99863 * 180.27519 * 17 16 15 20 20 H 1.08997 * 109.47183 * 59.72502 * 19 17 16 21 21 C 1.53002 * 109.47066 * 299.71962 * 19 17 16 22 22 C 1.52991 * 109.47496 * 305.95854 * 21 19 17 23 23 C 1.53001 * 109.46879 * 65.96168 * 21 19 17 24 24 N 1.46904 * 109.46708 * 179.72463 * 19 17 16 25 25 C 1.48534 * 110.99703 * 174.94279 * 24 19 17 26 26 C 1.54944 * 103.22513 * 159.72236 * 25 24 19 27 27 C 1.54596 * 102.91682 * 322.58202 * 26 25 24 28 28 C 1.47902 * 110.99999 * 292.33951 * 24 19 17 29 29 H 1.09006 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47034 * 299.99551 * 1 2 3 31 31 H 1.08998 * 109.47151 * 59.99733 * 1 2 3 32 32 H 1.08999 * 109.46575 * 240.00615 * 2 1 3 33 33 H 1.08998 * 109.47151 * 120.00267 * 2 1 3 34 34 H 1.08994 * 109.46836 * 30.00221 * 4 3 2 35 35 H 1.09001 * 109.46908 * 149.99952 * 4 3 2 36 36 H 0.97006 * 119.99935 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.46677 * 60.00187 * 15 13 3 38 38 H 1.08996 * 109.46958 * 300.00130 * 15 13 3 39 39 H 1.09005 * 109.46800 * 185.95909 * 21 19 17 40 40 H 1.08997 * 109.47375 * 65.25733 * 22 21 19 41 41 H 1.09001 * 109.47460 * 185.26066 * 22 21 19 42 42 H 1.09010 * 109.47056 * 305.25997 * 22 21 19 43 43 H 1.08996 * 109.47271 * 59.99650 * 23 21 19 44 44 H 1.08996 * 109.47162 * 179.97438 * 23 21 19 45 45 H 1.09000 * 109.46517 * 299.99577 * 23 21 19 46 46 H 1.09000 * 110.66933 * 278.15288 * 25 24 19 47 47 H 1.08995 * 110.66935 * 41.28557 * 25 24 19 48 48 H 1.09002 * 110.72035 * 204.22994 * 26 25 24 49 49 H 1.08994 * 110.88061 * 81.01647 * 26 25 24 50 50 H 1.09004 * 110.31207 * 263.03522 * 27 26 25 51 51 H 1.09008 * 110.30714 * 140.87835 * 27 26 25 52 52 H 1.09003 * 109.91417 * 333.50634 * 28 24 19 53 53 H 1.08996 * 109.91862 * 94.80732 * 28 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1489 2.3898 -2.8781 8 7 3.3489 3.1258 -3.6181 9 14 5.9129 2.0957 -3.4177 10 1 5.9758 0.8746 -4.2604 11 1 6.3920 3.2629 -4.2010 12 1 6.7733 1.9160 -2.2208 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 8 2.3055 2.1960 3.5759 17 6 2.1346 1.7123 4.8163 18 8 1.7361 0.5826 4.9746 19 6 2.4343 2.5800 6.0113 20 1 1.8041 3.4689 5.9822 21 6 3.9061 2.9971 5.9825 22 6 4.7873 1.7511 5.8737 23 6 4.1553 3.9050 4.7765 24 7 2.1627 1.8274 7.2433 25 6 2.5612 2.6078 8.4426 26 6 1.7521 1.9419 9.5839 27 6 0.4044 1.6090 8.9034 28 6 0.7152 1.5648 7.3958 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.5816 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1384 36 1 3.6747 3.5157 -4.4445 37 1 2.6213 0.4186 2.5301 38 1 0.9434 1.0125 2.5299 39 1 4.1493 3.5351 6.8988 40 1 4.6109 1.2640 4.9147 41 1 5.8357 2.0400 5.9471 42 1 4.5429 1.0615 6.6818 43 1 3.5276 4.7926 4.8540 44 1 5.2037 4.2025 4.7562 45 1 3.9122 3.3668 3.8603 46 1 3.6318 2.5138 8.6246 47 1 2.2794 3.6548 8.3314 48 1 1.6055 2.6380 10.4098 49 1 2.2443 1.0331 9.9301 50 1 -0.3291 2.3867 9.1160 51 1 0.0385 0.6399 9.2428 52 1 0.1418 2.3323 6.8759 53 1 0.4721 0.5806 6.9953 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741015431.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:34 Heat of formation + Delta-G solvation = -135.464295 kcal Electronic energy + Delta-G solvation = -31526.345337 eV Core-core repulsion = 27397.508906 eV Total energy + Delta-G solvation = -4128.836431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.12271 -40.77872 -39.73198 -37.53546 -36.96963 -36.71383 -34.94442 -32.24759 -31.77110 -30.77016 -29.83340 -28.66994 -28.02335 -27.25528 -24.92133 -24.21484 -23.21975 -22.54451 -21.54215 -20.59497 -20.17558 -18.79417 -18.64911 -18.28550 -17.96906 -17.43527 -17.08004 -16.88764 -16.50332 -16.30648 -15.98280 -15.31624 -14.98454 -14.78688 -14.66112 -14.59372 -14.43360 -14.01303 -13.99292 -13.86379 -13.60697 -13.42105 -13.29642 -13.20882 -13.09293 -13.04502 -12.81169 -12.69583 -12.52106 -12.30839 -12.21238 -12.14378 -12.05043 -11.92930 -11.88088 -11.75185 -11.74187 -11.64408 -11.42499 -11.26659 -10.72314 -10.64910 -9.55227 -9.49304 -8.23893 -6.38219 1.07977 1.18066 1.36371 1.39197 1.49420 1.61706 2.28700 2.42317 2.85487 3.06178 3.40727 3.49381 3.60219 3.70653 3.82038 3.90443 3.94549 3.98307 4.07707 4.12687 4.18259 4.33245 4.35440 4.35615 4.53931 4.56014 4.66435 4.69925 4.78536 4.86040 4.92042 4.93059 4.97346 5.00745 5.01165 5.01893 5.07894 5.10360 5.16637 5.19974 5.26264 5.30897 5.33233 5.37080 5.52985 5.58040 5.78097 5.79485 5.88392 6.03523 6.55577 6.68422 6.70873 7.20678 7.36076 8.83527 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017248 B = 0.002676 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.027455 B =10461.146025 C =11473.205785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.264 3.736 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.273 1.273 13 C 0.501 3.499 14 O -0.572 6.572 15 C 0.059 3.941 16 O -0.339 6.339 17 C 0.467 3.533 18 O -0.510 6.510 19 C 0.094 3.906 20 H 0.088 0.912 21 C -0.075 4.075 22 C -0.142 4.142 23 C -0.160 4.160 24 N -0.509 5.509 25 C 0.032 3.968 26 C -0.117 4.117 27 C -0.127 4.127 28 C 0.032 3.968 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.029 0.971 35 H 0.000 1.000 36 H 0.268 0.732 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.024 0.976 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.097 0.903 47 H 0.059 0.941 48 H 0.093 0.907 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.076 0.924 52 H 0.037 0.963 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 -4.673 26.320 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.143 3.857 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.288 3.712 14 O -0.452 6.452 15 C -0.017 4.017 16 O -0.255 6.255 17 C 0.310 3.690 18 O -0.398 6.398 19 C -0.016 4.016 20 H 0.106 0.894 21 C -0.094 4.094 22 C -0.200 4.200 23 C -0.218 4.218 24 N -0.235 5.235 25 C -0.094 4.094 26 C -0.155 4.155 27 C -0.165 4.165 28 C -0.096 4.096 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.047 0.953 35 H 0.018 0.982 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.111 0.889 49 H 0.093 0.907 50 H 0.097 0.903 51 H 0.094 0.906 52 H 0.055 0.945 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.197 -4.828 26.093 26.866 hybrid contribution 0.134 0.665 -1.255 1.426 sum -4.064 -4.164 24.838 25.511 Atomic orbital electron populations 1.22170 0.94322 1.03756 1.01799 1.21842 0.95561 0.81115 1.04248 1.48203 1.63702 1.15186 1.05750 1.18785 0.95568 0.91663 0.79695 1.21678 0.97787 1.32155 1.06607 0.92878 1.25833 1.02351 0.94414 0.96398 1.70043 1.37764 1.34082 1.14753 0.85428 0.79034 0.78221 0.78212 1.18808 1.20582 1.19823 1.20466 0.78367 0.86675 0.85677 1.90674 1.46896 1.19910 1.87674 1.22776 1.04236 0.92238 0.82491 1.86671 1.78698 1.45142 1.14951 1.24040 0.73476 0.87280 0.84203 1.90617 1.42433 1.20286 1.86436 1.21652 1.00279 0.93278 0.86405 0.89427 1.21171 0.90053 0.97227 1.00911 1.21802 1.00039 0.97151 1.00976 1.22038 1.02282 0.99575 0.97855 1.64540 1.16720 1.42049 1.00179 1.23433 1.01702 0.95951 0.88313 1.22475 0.94534 1.01414 0.97076 1.22400 0.98462 1.02928 0.92676 1.22946 0.87395 1.01215 0.98045 0.88425 0.92574 0.93569 0.89973 0.88733 0.95320 0.98156 0.92347 0.87175 0.86553 0.86789 0.95672 0.90989 0.91052 0.92136 0.91395 0.92981 0.88511 0.92299 0.88890 0.90715 0.90322 0.90559 0.94480 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.09 2.92 5.93 86.38 0.51 3.43 16 3 N -0.60 -25.54 2.46 -826.14 -2.03 -27.57 16 4 C 0.26 14.23 5.16 85.63 0.44 14.68 16 5 C -0.54 -31.39 9.39 25.60 0.24 -31.15 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.53 5.46 84.66 0.46 0.99 16 8 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 9 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 13 C 0.50 21.65 7.75 87.66 0.68 22.33 16 14 O -0.57 -30.45 16.08 15.77 0.25 -30.20 16 15 C 0.06 1.93 4.50 71.24 0.32 2.25 16 16 O -0.34 -11.29 6.96 -45.06 -0.31 -11.60 16 17 C 0.47 13.41 5.58 71.23 0.40 13.81 16 18 O -0.51 -15.95 14.66 21.96 0.32 -15.63 16 19 C 0.09 2.06 1.53 44.17 0.07 2.13 16 20 H 0.09 1.78 7.88 -2.39 -0.02 1.76 16 21 C -0.08 -1.49 2.45 -10.80 -0.03 -1.51 16 22 C -0.14 -3.06 8.69 71.98 0.63 -2.44 16 23 C -0.16 -3.95 8.86 71.98 0.64 -3.31 16 24 N -0.51 -9.78 4.24 -862.23 -3.65 -13.43 16 25 C 0.03 0.41 5.19 86.65 0.45 0.86 16 26 C -0.12 -1.20 7.06 31.80 0.22 -0.98 16 27 C -0.13 -1.58 6.93 31.47 0.22 -1.36 16 28 C 0.03 0.60 5.67 86.45 0.49 1.08 16 29 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.06 1.35 7.22 -2.39 -0.02 1.33 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 33 H 0.09 2.36 6.44 -2.39 -0.02 2.34 16 34 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 35 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 36 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 37 H 0.11 3.22 7.39 -2.39 -0.02 3.20 16 38 H 0.12 3.20 7.18 -2.39 -0.02 3.18 16 39 H 0.11 1.61 6.51 -2.38 -0.02 1.60 16 40 H 0.02 0.66 7.27 -2.39 -0.02 0.64 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.49 7.65 -2.38 -0.02 1.48 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.05 1.71 5.50 -2.39 -0.01 1.69 16 46 H 0.10 1.05 7.53 -2.39 -0.02 1.03 16 47 H 0.06 0.64 8.02 -2.39 -0.02 0.62 16 48 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 51 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 52 H 0.04 0.71 7.61 -2.39 -0.02 0.69 16 53 H 0.07 1.59 7.29 -2.39 -0.02 1.58 16 Total: -1.00 -75.62 415.36 4.24 -71.37 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.87 Total: 18.27 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 6.48 Total: 17.45 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -5.40 Total: -96.70 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: 0.26 Total: -57.44 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -75.62 4.24 -71.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741015431.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.090 kcal (2) G-P(sol) polarization free energy of solvation -75.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds