Wall clock time and date at job start Sat Apr 11 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47003 * 2 1 4 4 C 1.46509 * 120.00148 * 89.99785 * 3 2 1 5 5 C 1.50699 * 109.47199 * 89.99679 * 4 3 2 6 6 H 1.07998 * 119.99865 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00053 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99884 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00126 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47051 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47325 * 300.00144 * 9 7 5 12 12 H 1.48507 * 109.46935 * 60.00286 * 9 7 5 13 13 C 1.34770 * 119.99998 * 269.99158 * 3 2 1 14 14 O 1.21284 * 119.99850 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00098 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.47521 * 179.97438 * 15 13 3 17 17 C 1.34222 * 117.00663 * 179.97438 * 16 15 13 18 18 O 1.20827 * 119.99513 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00720 * 179.97438 * 17 16 15 20 20 H 1.09009 * 109.46714 * 41.78254 * 19 17 16 21 21 C 1.52995 * 109.47289 * 281.78403 * 19 17 16 22 22 N 1.46898 * 109.47324 * 161.78123 * 19 17 16 23 23 C 1.47844 * 111.00146 * 167.90192 * 22 19 17 24 24 H 1.09005 * 110.37407 * 27.52995 * 23 22 19 25 25 C 1.52999 * 110.37289 * 265.19683 * 23 22 19 26 26 C 1.54905 * 104.79941 * 146.36181 * 23 22 19 27 27 C 1.55137 * 101.65356 * 322.93185 * 26 23 22 28 28 C 1.47446 * 111.00238 * 288.74311 * 22 19 17 29 29 H 1.08991 * 109.89237 * 117.33666 * 28 22 19 30 30 C 1.53007 * 109.88661 * 356.30965 * 28 22 19 31 31 H 1.08998 * 109.47650 * 300.00238 * 1 2 3 32 32 H 1.09004 * 109.46849 * 60.00524 * 1 2 3 33 33 H 1.09005 * 109.47076 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47650 * 239.99762 * 2 1 3 35 35 H 1.09004 * 109.46849 * 119.99476 * 2 1 3 36 36 H 1.09003 * 109.46599 * 329.99644 * 4 3 2 37 37 H 1.08996 * 109.46651 * 210.00077 * 4 3 2 38 38 H 0.97005 * 119.99918 * 0.02562 * 8 7 5 39 39 H 1.09000 * 109.46783 * 299.99473 * 15 13 3 40 40 H 1.09001 * 109.47662 * 59.98934 * 15 13 3 41 41 H 1.09007 * 109.46833 * 59.99659 * 21 19 17 42 42 H 1.09006 * 109.47298 * 179.97438 * 21 19 17 43 43 H 1.08998 * 109.47224 * 300.00121 * 21 19 17 44 44 H 1.08997 * 109.47283 * 59.99526 * 25 23 22 45 45 H 1.08998 * 109.47621 * 179.97438 * 25 23 22 46 46 H 1.09003 * 109.47205 * 299.99787 * 25 23 22 47 47 H 1.09001 * 110.98956 * 204.83264 * 26 23 22 48 48 H 1.09001 * 110.98626 * 81.02629 * 26 23 22 49 49 H 1.09009 * 110.70215 * 277.26879 * 27 26 23 50 50 H 1.08994 * 110.70877 * 154.03542 * 27 26 23 51 51 H 1.09002 * 109.47008 * 61.54372 * 30 28 22 52 52 H 1.08994 * 109.46972 * 181.54205 * 30 28 22 53 53 H 1.09006 * 109.47026 * 301.54327 * 30 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 1.2688 5 6 3.6856 1.8351 1.7039 6 1 4.3427 1.2310 1.0960 7 6 4.1489 2.3898 2.8781 8 7 3.3488 3.1259 3.6182 9 14 5.9132 2.0968 3.4171 10 1 6.1606 2.7968 4.7032 11 1 6.1415 0.6402 3.5939 12 1 6.8404 2.6212 2.3824 13 6 2.2430 2.0165 -1.1671 14 8 2.6468 3.1601 -1.1671 15 6 1.9915 1.3062 -2.4722 16 8 2.3057 2.1959 -3.5759 17 6 2.1349 1.7122 -4.8163 18 8 1.7364 0.5826 -4.9745 19 6 2.4399 2.5779 -6.0114 20 1 3.3616 3.1320 -5.8328 21 6 1.2893 3.5609 -6.2362 22 7 2.6003 1.7314 -7.2012 23 6 2.6129 2.5471 -8.4341 24 1 2.9823 3.5504 -8.2216 25 6 1.2111 2.6126 -9.0438 26 6 3.5822 1.8064 -9.3888 27 6 4.6679 1.3009 -8.4027 28 6 3.8553 0.9602 -7.1358 29 1 3.6341 -0.1068 -7.1130 30 6 4.6441 1.3548 -5.8856 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8932 -0.5138 0.8901 36 1 1.5815 1.6878 2.0284 37 1 2.0954 3.1411 1.1383 38 1 2.4327 3.2783 3.3381 39 1 2.6215 0.4186 -2.5301 40 1 0.9435 1.0122 -2.5299 41 1 1.1704 4.1891 -5.3533 42 1 1.5102 4.1874 -7.1005 43 1 0.3677 3.0068 -6.4147 44 1 0.5239 3.0624 -8.3272 45 1 1.2370 3.2170 -9.9504 46 1 0.8736 1.6053 -9.2878 47 1 4.0085 2.4918 -10.1213 48 1 3.0831 0.9719 -9.8815 49 1 5.3951 2.0859 -8.1946 50 1 5.1609 0.4115 -8.7950 51 1 4.0579 1.1203 -4.9970 52 1 5.5825 0.8011 -5.8583 53 1 4.8538 2.4242 -5.9108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741021713.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:13 Heat of formation + Delta-G solvation = -127.030753 kcal Electronic energy + Delta-G solvation = -31431.482537 eV Core-core repulsion = 27303.011812 eV Total energy + Delta-G solvation = -4128.470725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.30383 -41.03784 -40.18446 -37.63037 -37.10891 -35.26052 -34.78735 -33.96259 -31.72780 -30.83604 -29.85775 -29.16112 -28.11517 -26.00528 -25.04800 -24.63692 -24.17498 -22.27280 -21.73088 -20.62612 -20.09904 -19.11585 -18.87104 -18.24689 -17.98821 -17.48000 -17.28021 -17.05341 -16.66001 -16.17994 -15.66401 -15.44573 -15.01699 -14.93660 -14.66741 -14.43953 -14.40362 -14.09923 -14.00509 -13.87629 -13.74348 -13.54219 -13.43064 -13.25628 -13.20527 -13.10362 -12.83083 -12.66930 -12.50867 -12.48967 -12.34858 -12.19406 -12.12785 -11.96478 -11.87279 -11.77916 -11.60249 -11.50397 -11.39436 -11.25732 -10.86910 -10.63637 -9.62421 -9.36701 -8.72291 -6.47888 1.04183 1.09997 1.46186 1.50508 1.57567 1.77198 2.19701 2.52306 2.79483 3.07376 3.29879 3.43789 3.60315 3.67361 3.78927 3.84826 3.85454 3.90022 3.97179 4.02532 4.14793 4.25412 4.28034 4.30886 4.44878 4.46116 4.56335 4.61275 4.65131 4.67385 4.76696 4.79162 4.84932 4.87923 4.89581 4.90359 4.98390 5.02743 5.03940 5.12363 5.21010 5.24227 5.24691 5.35721 5.46009 5.48614 5.77661 5.84628 5.99861 6.09147 6.41019 6.44959 6.63703 7.10519 7.32073 8.63527 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016495 B = 0.002542 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.057436 B =11012.583939 C =11734.921308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.592 5.592 4 C 0.249 3.751 5 C -0.620 4.620 6 H 0.046 0.954 7 C -0.030 4.030 8 N -0.929 5.929 9 Si 1.118 2.882 10 H -0.279 1.279 11 H -0.261 1.261 12 H -0.280 1.280 13 C 0.501 3.499 14 O -0.576 6.576 15 C 0.065 3.935 16 O -0.353 6.353 17 C 0.470 3.530 18 O -0.511 6.511 19 C 0.085 3.915 20 H 0.091 0.909 21 C -0.147 4.147 22 N -0.515 5.515 23 C 0.065 3.935 24 H 0.069 0.931 25 C -0.142 4.142 26 C -0.118 4.118 27 C -0.132 4.132 28 C 0.067 3.933 29 H 0.075 0.925 30 C -0.176 4.176 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.025 0.975 37 H -0.005 1.005 38 H 0.256 0.744 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.052 0.948 47 H 0.095 0.905 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.030 0.970 52 H 0.079 0.921 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 -5.615 -27.660 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.324 5.324 4 C 0.128 3.872 5 C -0.658 4.658 6 H 0.064 0.936 7 C -0.228 4.228 8 N -0.566 5.566 9 Si 0.939 3.061 10 H -0.204 1.204 11 H -0.186 1.186 12 H -0.206 1.206 13 C 0.288 3.712 14 O -0.455 6.455 15 C -0.012 4.012 16 O -0.269 6.269 17 C 0.313 3.687 18 O -0.399 6.399 19 C -0.024 4.024 20 H 0.108 0.892 21 C -0.204 4.204 22 N -0.242 5.242 23 C -0.041 4.041 24 H 0.087 0.913 25 C -0.200 4.200 26 C -0.156 4.156 27 C -0.171 4.171 28 C -0.040 4.040 29 H 0.093 0.907 30 C -0.234 4.234 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.043 0.957 37 H 0.013 0.987 38 H 0.065 0.935 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.121 0.879 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.071 0.929 47 H 0.114 0.886 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.104 0.896 51 H 0.049 0.951 52 H 0.098 0.902 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.917 -5.389 -26.473 27.084 hybrid contribution -0.687 0.113 -0.325 0.769 sum -2.605 -5.276 -26.798 27.436 Atomic orbital electron populations 1.22175 0.94054 1.03967 1.01863 1.21869 0.95727 0.80831 1.04337 1.48042 1.63745 1.15251 1.05346 1.18919 0.96071 0.91471 0.80733 1.22522 0.97967 1.35630 1.09663 0.93595 1.27352 1.09423 0.92507 0.93543 1.70929 1.07706 1.37651 1.40329 0.82928 0.69501 0.77597 0.76096 1.20366 1.18594 1.20594 1.20529 0.78224 0.86637 0.85773 1.90674 1.47028 1.20107 1.87728 1.22728 1.04449 0.91961 0.82063 1.86575 1.79317 1.45757 1.15203 1.24051 0.73422 0.87260 0.83955 1.90636 1.42599 1.20300 1.86317 1.21473 1.02144 0.92169 0.86651 0.89166 1.22105 0.96451 0.97643 1.04236 1.63464 1.35798 1.24435 1.00514 1.22749 0.97617 0.95761 0.88021 0.91327 1.21947 0.94822 1.02306 1.00878 1.22750 0.95260 1.00568 0.97005 1.22854 0.97805 1.02447 0.93967 1.22433 0.87760 0.98698 0.95132 0.90727 1.22514 1.01247 1.02438 0.97154 0.93573 0.92420 0.88204 0.88548 0.90065 0.95666 0.98664 0.93480 0.87038 0.86283 0.91298 0.87917 0.91122 0.92027 0.90442 0.92882 0.88622 0.90477 0.90478 0.89570 0.95100 0.90222 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 10.24 71.98 0.74 -3.34 16 2 C 0.09 2.92 5.93 86.38 0.51 3.44 16 3 N -0.59 -25.53 2.46 -826.15 -2.03 -27.56 16 4 C 0.25 13.40 4.47 85.63 0.38 13.79 16 5 C -0.62 -36.15 9.39 25.60 0.24 -35.90 16 6 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 7 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 8 N -0.93 -57.84 13.65 21.45 0.29 -57.55 16 9 Si 1.12 51.25 29.90 68.60 2.05 53.30 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.50 21.96 7.75 87.66 0.68 22.64 16 14 O -0.58 -31.25 16.08 15.75 0.25 -31.00 16 15 C 0.06 2.14 4.50 71.24 0.32 2.46 16 16 O -0.35 -12.05 9.74 -44.99 -0.44 -12.49 16 17 C 0.47 13.71 4.15 71.24 0.30 14.01 16 18 O -0.51 -16.45 15.89 21.96 0.35 -16.10 16 19 C 0.09 1.90 2.03 44.17 0.09 1.99 16 20 H 0.09 1.94 5.73 -2.38 -0.01 1.92 16 21 C -0.15 -2.65 7.66 71.98 0.55 -2.10 16 22 N -0.52 -10.17 4.31 -815.28 -3.51 -13.68 16 23 C 0.07 0.88 2.37 45.38 0.11 0.99 16 24 H 0.07 0.82 6.95 -2.38 -0.02 0.80 16 25 C -0.14 -1.70 9.10 71.98 0.66 -1.04 16 26 C -0.12 -1.26 6.50 31.98 0.21 -1.05 16 27 C -0.13 -1.67 6.47 31.77 0.21 -1.46 16 28 C 0.07 1.28 3.56 45.26 0.16 1.45 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 C -0.18 -3.71 7.75 71.98 0.56 -3.15 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.38 7.22 -2.39 -0.02 1.36 16 33 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.10 2.42 6.44 -2.39 -0.02 2.40 16 35 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 36 H 0.03 1.35 7.94 -2.39 -0.02 1.33 16 37 H 0.00 -0.29 7.29 -2.39 -0.02 -0.30 16 38 H 0.26 16.07 7.22 -92.70 -0.67 15.40 16 39 H 0.11 3.27 7.39 -2.39 -0.02 3.25 16 40 H 0.12 3.31 7.18 -2.39 -0.02 3.30 16 41 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.10 1.30 5.67 -2.38 -0.01 1.29 16 43 H 0.07 1.31 7.28 -2.39 -0.02 1.29 16 44 H 0.06 0.78 5.20 -2.39 -0.01 0.77 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.05 0.75 8.13 -2.39 -0.02 0.73 16 47 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.08 0.86 8.05 -2.39 -0.02 0.84 16 49 H 0.08 0.89 7.86 -2.38 -0.02 0.87 16 50 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.03 0.82 4.94 -2.39 -0.01 0.81 16 52 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.07 1.36 6.45 -2.38 -0.02 1.34 16 Total: -1.00 -79.14 408.64 4.12 -75.02 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.99 Total: 18.64 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.17 Total: 11.42 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -5.25 Total: -98.79 kcal Atomic # 8 Polarization: -59.75 SS G_CDS: 0.16 Total: -59.59 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.05 Total: 53.30 kcal Total: -79.14 4.12 -75.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741021713.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.015 kcal (2) G-P(sol) polarization free energy of solvation -79.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds