Wall clock time and date at job start Sat Apr 11 2020 06:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47138 * 2 1 4 4 C 1.46505 * 119.99725 * 269.99968 * 3 2 1 5 5 C 1.50706 * 109.47048 * 269.99942 * 4 3 2 6 6 H 1.08004 * 119.99983 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00033 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00017 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00386 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47081 * 59.99479 * 9 7 5 11 11 H 1.48495 * 109.47341 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46575 * 300.00072 * 9 7 5 13 13 C 1.34774 * 120.00150 * 90.00041 * 3 2 1 14 14 O 1.21281 * 120.00012 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00022 * 359.97438 * 13 3 2 16 16 O 1.45206 * 109.46782 * 179.97438 * 15 13 3 17 17 C 1.34229 * 116.99318 * 179.97438 * 16 15 13 18 18 O 1.20824 * 120.00484 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99580 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.47109 * 64.81912 * 19 17 16 21 21 C 1.53008 * 109.47310 * 304.81862 * 19 17 16 22 22 N 1.46901 * 109.47206 * 184.82282 * 19 17 16 23 23 C 1.48810 * 111.18406 * 80.00717 * 22 19 17 24 24 H 1.08995 * 110.52372 * 41.07664 * 23 22 19 25 25 C 1.52998 * 110.83915 * 278.08948 * 23 22 19 26 26 C 1.54940 * 103.34873 * 159.51034 * 23 22 19 27 27 C 1.54603 * 102.91904 * 322.68846 * 26 23 22 28 28 C 1.47905 * 111.00229 * 197.34391 * 22 19 17 29 29 H 1.09001 * 109.91117 * 333.70421 * 28 22 19 30 30 C 1.52994 * 109.91897 * 94.79995 * 28 22 19 31 31 H 1.09003 * 109.46599 * 300.00007 * 1 2 3 32 32 H 1.08993 * 109.46989 * 60.00207 * 1 2 3 33 33 H 1.09000 * 109.46745 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47309 * 239.99504 * 2 1 3 35 35 H 1.09004 * 109.47377 * 120.00024 * 2 1 3 36 36 H 1.09001 * 109.47243 * 29.99793 * 4 3 2 37 37 H 1.08997 * 109.46935 * 150.00025 * 4 3 2 38 38 H 0.96991 * 120.00425 * 179.97438 * 8 7 5 39 39 H 1.08993 * 109.46937 * 60.00355 * 15 13 3 40 40 H 1.08999 * 109.47029 * 300.00130 * 15 13 3 41 41 H 1.08991 * 109.47408 * 188.35430 * 21 19 17 42 42 H 1.08996 * 109.46781 * 308.35859 * 21 19 17 43 43 H 1.09008 * 109.46657 * 68.35346 * 21 19 17 44 44 H 1.09003 * 109.47552 * 313.89022 * 25 23 22 45 45 H 1.09002 * 109.47441 * 73.89318 * 25 23 22 46 46 H 1.09005 * 109.47422 * 193.89004 * 25 23 22 47 47 H 1.08996 * 110.72496 * 204.33734 * 26 23 22 48 48 H 1.08999 * 110.87972 * 81.11734 * 26 23 22 49 49 H 1.08996 * 110.30529 * 263.04410 * 27 26 23 50 50 H 1.08994 * 110.30859 * 140.87773 * 27 26 23 51 51 H 1.08993 * 109.47521 * 174.68734 * 30 28 22 52 52 H 1.09005 * 109.46828 * 54.68325 * 30 28 22 53 53 H 1.09005 * 109.47317 * 294.68867 * 30 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0962 7 6 4.1494 2.3903 -2.8775 8 7 3.3494 3.1264 -3.6177 9 14 5.9134 2.0962 -3.4172 10 1 6.1402 0.6395 -3.5954 11 1 6.1613 2.7973 -4.7025 12 1 6.8413 2.6186 -2.3820 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9913 1.3064 2.4723 16 8 2.3065 2.1958 3.5759 17 6 2.1346 1.7124 4.8163 18 8 1.7345 0.5834 4.9746 19 6 2.4408 2.5779 6.0113 20 1 1.7539 3.4240 6.0327 21 6 3.8790 3.0909 5.9146 22 7 2.2841 1.7888 7.2405 23 6 3.4797 0.9386 7.4897 24 1 4.3935 1.4897 7.2675 25 6 3.4135 -0.3487 6.6656 26 6 3.3855 0.6240 9.0039 27 6 2.8497 1.9464 9.5991 28 6 2.1654 2.6684 8.4236 29 1 2.6633 3.6188 8.2310 30 6 0.6898 2.9096 8.7479 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 1.5817 1.6876 -2.0285 37 1 2.0955 3.1410 -1.1385 38 1 3.6756 3.5174 -4.4432 39 1 2.6211 0.4188 2.5302 40 1 0.9432 1.0126 2.5298 41 1 4.1496 3.5915 6.8442 42 1 4.5533 2.2517 5.7442 43 1 3.9586 3.7950 5.0862 44 1 2.4180 -0.7844 6.7514 45 1 3.6220 -0.1220 5.6200 46 1 4.1534 -1.0572 7.0382 47 1 4.3688 0.3884 9.4108 48 1 2.6875 -0.1927 9.1883 49 1 3.6724 2.5481 9.9853 50 1 2.1272 1.7405 10.3888 51 1 0.6097 3.4793 9.6736 52 1 0.1825 1.9520 8.8654 53 1 0.2260 3.4692 7.9356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741021714.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:17 Heat of formation + Delta-G solvation = -108.511315 kcal Electronic energy + Delta-G solvation = -31268.867824 eV Core-core repulsion = 27141.200162 eV Total energy + Delta-G solvation = -4127.667662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.98708 -39.64951 -38.75825 -36.24489 -35.28558 -34.05531 -32.85224 -32.82335 -30.18319 -29.60200 -28.89008 -28.19652 -26.61320 -24.92323 -24.15471 -23.08035 -22.62328 -21.34568 -20.70351 -19.43980 -18.66602 -17.55370 -17.22417 -16.70552 -16.42050 -16.17375 -15.81765 -15.25640 -15.05169 -14.89174 -14.75064 -14.28811 -14.00054 -13.49540 -13.44995 -13.23122 -13.21492 -13.00821 -12.77771 -12.59450 -12.55670 -12.20908 -12.17975 -12.05092 -11.99768 -11.89050 -11.62813 -11.55282 -11.35311 -11.23353 -11.01249 -10.96307 -10.93003 -10.79928 -10.67732 -10.56165 -10.41947 -10.15383 -10.13814 -9.68373 -8.98394 -8.70321 -8.45050 -7.75186 -6.06250 -4.11247 2.26333 2.39062 3.26116 3.31200 3.35557 3.39385 3.56918 3.89750 4.20037 4.36932 4.43256 4.58769 4.68381 4.73507 4.82270 4.86915 4.90288 5.03989 5.09646 5.15414 5.24249 5.28279 5.29141 5.33845 5.35247 5.38386 5.44820 5.50138 5.55692 5.59483 5.60466 5.61851 5.73998 5.81598 5.86091 5.89936 5.98332 5.99743 6.00964 6.19439 6.29156 6.44766 6.48720 6.66424 6.69853 7.00271 7.39440 7.47341 7.85200 7.90283 8.19933 8.30378 8.84499 8.99418 9.53711 11.01890 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.002438 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.195275 B =11480.568443 C =11962.230428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.052 3.948 16 O -0.332 6.332 17 C 0.462 3.538 18 O -0.483 6.483 19 C 0.087 3.913 20 H 0.118 0.882 21 C -0.182 4.182 22 N -0.491 5.491 23 C 0.051 3.949 24 H 0.065 0.935 25 C -0.130 4.130 26 C -0.117 4.117 27 C -0.126 4.126 28 C 0.062 3.938 29 H 0.057 0.943 30 C -0.137 4.137 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.074 0.926 51 H 0.058 0.942 52 H 0.064 0.936 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 -5.028 25.043 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.026 4.026 16 O -0.247 6.247 17 C 0.302 3.698 18 O -0.369 6.369 19 C -0.023 4.023 20 H 0.135 0.865 21 C -0.241 4.241 22 N -0.216 5.216 23 C -0.057 4.057 24 H 0.083 0.917 25 C -0.187 4.187 26 C -0.155 4.155 27 C -0.164 4.164 28 C -0.046 4.046 29 H 0.075 0.925 30 C -0.194 4.194 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.093 0.907 51 H 0.077 0.923 52 H 0.083 0.917 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.919 -4.962 24.771 25.566 hybrid contribution 1.563 0.160 -0.484 1.644 sum -2.356 -4.802 24.287 24.869 Atomic orbital electron populations 1.22230 0.96528 1.01687 1.02408 1.21501 0.93763 0.83962 1.02979 1.48211 1.63845 1.13401 1.07160 1.19322 0.96432 0.93700 0.77595 1.21387 0.96858 1.32103 1.06379 0.92480 1.24929 0.97895 0.94870 0.96344 1.69918 1.35737 1.33283 1.14381 0.86549 0.84729 0.78261 0.77837 1.20233 1.21150 1.20163 1.19732 0.79657 0.87145 0.84320 1.90710 1.44545 1.17516 1.86768 1.22914 1.02574 0.92600 0.84469 1.86553 1.78760 1.45055 1.14284 1.23398 0.75149 0.87045 0.84175 1.90654 1.40649 1.19352 1.86264 1.21271 0.99002 0.94574 0.87487 0.86463 1.22384 0.95216 1.02659 1.03806 1.64624 1.38521 1.18631 0.99842 1.23057 0.92047 0.95089 0.95471 0.91681 1.21758 1.02613 0.95331 0.99042 1.22502 1.01253 0.97703 0.94066 1.22454 1.00041 0.96546 0.97374 1.22381 0.97321 0.95062 0.89827 0.92467 1.21783 0.94693 1.02127 1.00829 0.93123 0.91801 0.91907 0.89461 0.91781 0.94650 0.93726 0.92611 0.88930 0.88861 0.91230 0.91308 0.89726 0.90738 0.92927 0.93172 0.91119 0.90576 0.91450 0.90683 0.92326 0.91669 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.10 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -12.48 2.46 -175.05 -0.43 -12.91 16 4 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 5 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 9 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.77 7.75 -10.99 -0.09 10.69 16 14 O -0.52 -13.40 16.08 -14.10 -0.23 -13.63 16 15 C 0.05 0.85 4.50 36.01 0.16 1.02 16 16 O -0.33 -5.52 9.59 -45.90 -0.44 -5.96 16 17 C 0.46 6.58 6.43 36.01 0.23 6.81 16 18 O -0.48 -7.44 12.59 -18.75 -0.24 -7.67 16 19 C 0.09 0.96 2.71 -68.86 -0.19 0.78 16 20 H 0.12 1.18 7.98 -51.93 -0.41 0.76 16 21 C -0.18 -1.81 7.67 37.16 0.29 -1.53 16 22 N -0.49 -5.00 4.24 -208.09 -0.88 -5.88 16 23 C 0.05 0.48 2.45 -65.63 -0.16 0.32 16 24 H 0.07 0.60 5.34 -51.93 -0.28 0.32 16 25 C -0.13 -1.42 7.77 37.16 0.29 -1.13 16 26 C -0.12 -0.88 6.50 -24.86 -0.16 -1.04 16 27 C -0.13 -0.84 6.57 -25.37 -0.17 -1.01 16 28 C 0.06 0.49 2.76 -66.65 -0.18 0.31 16 29 H 0.06 0.42 6.68 -51.93 -0.35 0.08 16 30 C -0.14 -1.02 9.32 37.15 0.35 -0.67 16 31 H 0.05 0.66 7.22 -51.93 -0.37 0.28 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.42 8.07 -51.93 -0.42 1.01 16 35 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 36 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 37 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.09 1.39 7.39 -51.93 -0.38 1.00 16 40 H 0.09 1.36 7.18 -51.93 -0.37 0.99 16 41 H 0.07 0.56 6.87 -51.93 -0.36 0.20 16 42 H 0.07 0.72 6.58 -51.93 -0.34 0.37 16 43 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 44 H 0.07 0.93 7.55 -51.93 -0.39 0.54 16 45 H 0.05 0.67 6.21 -51.93 -0.32 0.35 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.45 7.69 -51.93 -0.40 0.05 16 51 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 52 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 53 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 413.84 15.07 6.24 6.24 Total: -1.00 -33.54 413.84 -9.29 -42.84 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -9.31 Total: -1.17 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 0.28 Total: 7.08 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.58 Total: -44.49 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.90 Total: -27.26 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.54 -9.29 -42.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741021714.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.675 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds