Wall clock time and date at job start Sat Apr 11 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47075 * 2 1 4 4 C 1.52996 * 109.47065 * 239.99729 * 2 1 3 5 5 H 1.08997 * 109.47674 * 305.67562 * 4 2 1 6 6 C 1.50700 * 109.47425 * 65.67973 * 4 2 1 7 7 O 1.20822 * 120.00516 * 119.99135 * 6 4 2 8 8 O 1.34231 * 119.99516 * 300.00198 * 6 4 2 9 9 C 1.45197 * 116.99733 * 179.97438 * 8 6 4 10 10 H 1.09003 * 109.47455 * 29.99923 * 9 8 6 11 11 C 1.53003 * 109.47567 * 269.99695 * 9 8 6 12 12 C 1.50702 * 109.47343 * 149.99866 * 9 8 6 13 13 O 1.21283 * 119.99730 * 9.26996 * 12 9 8 14 14 N 1.34772 * 120.00647 * 189.27681 * 12 9 8 15 15 C 1.46510 * 119.99612 * 5.13079 * 14 12 9 16 16 C 1.46498 * 120.00322 * 185.13140 * 14 12 9 17 17 C 1.50705 * 109.46996 * 90.00088 * 16 14 12 18 18 H 1.07994 * 119.99911 * 0.02562 * 17 16 14 19 19 C 1.37879 * 119.99591 * 180.02562 * 17 16 14 20 20 N 1.31511 * 120.00318 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99601 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47329 * 89.99996 * 21 19 17 23 23 H 1.48499 * 109.47160 * 210.00002 * 21 19 17 24 24 H 1.48502 * 109.47183 * 329.99675 * 21 19 17 25 25 N 1.46904 * 109.47236 * 185.67642 * 4 2 1 26 26 C 1.48534 * 110.99658 * 55.95942 * 25 4 2 27 27 C 1.54938 * 103.22539 * 159.71933 * 26 25 4 28 28 C 1.54591 * 102.92274 * 322.59164 * 27 26 25 29 29 C 1.47899 * 111.00137 * 173.35745 * 25 4 2 30 30 H 1.08996 * 109.46678 * 60.00027 * 1 2 3 31 31 H 1.09002 * 109.47276 * 300.00157 * 1 2 3 32 32 H 1.08998 * 109.46948 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47120 * 120.00066 * 2 1 3 34 34 H 1.09000 * 109.47187 * 66.15076 * 3 2 1 35 35 H 1.09001 * 109.46426 * 186.14602 * 3 2 1 36 36 H 1.08999 * 109.46934 * 306.14217 * 3 2 1 37 37 H 1.08992 * 109.47573 * 185.57200 * 11 9 8 38 38 H 1.09001 * 109.46881 * 305.57501 * 11 9 8 39 39 H 1.09001 * 109.46636 * 65.56608 * 11 9 8 40 40 H 1.09003 * 109.46968 * 90.46912 * 15 14 12 41 41 H 1.09000 * 109.46735 * 210.46578 * 15 14 12 42 42 H 1.08995 * 109.46717 * 330.46500 * 15 14 12 43 43 H 1.09003 * 109.47163 * 209.99340 * 16 14 12 44 44 H 1.08999 * 109.47053 * 329.99839 * 16 14 12 45 45 H 0.96997 * 119.99975 * 179.97438 * 20 19 17 46 46 H 1.08997 * 110.67260 * 278.15940 * 26 25 4 47 47 H 1.09004 * 110.67066 * 41.29071 * 26 25 4 48 48 H 1.08999 * 110.72751 * 204.22754 * 27 26 25 49 49 H 1.09006 * 110.71950 * 80.94707 * 27 26 25 50 50 H 1.09003 * 110.30827 * 263.03547 * 28 27 26 51 51 H 1.08999 * 110.31048 * 140.87610 * 28 27 26 52 52 H 1.08994 * 109.91772 * 333.50837 * 29 25 4 53 53 H 1.08999 * 109.91541 * 94.80389 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.5961 -1.7154 -1.3015 6 6 1.6558 0.0655 -2.4757 7 8 2.5124 0.4837 -3.2181 8 8 0.3618 0.3019 -2.7432 9 6 0.0655 1.0669 -3.9412 10 1 0.8385 0.8862 -4.6882 11 6 0.0266 2.5575 -3.5981 12 6 -1.2724 0.6428 -4.4900 13 8 -1.9879 -0.0922 -3.8429 14 7 -1.6738 1.0801 -5.7000 15 6 -0.7652 1.8750 -6.5300 16 6 -3.0187 0.7606 -6.1852 17 6 -3.9774 1.8414 -5.7563 18 1 -3.6205 2.6823 -5.1803 19 6 -5.3101 1.7565 -6.0993 20 7 -5.7448 0.7322 -6.8003 21 14 -6.4986 3.0958 -5.5671 22 1 -6.5535 4.1517 -6.6096 23 1 -7.8514 2.5121 -5.3819 24 1 -6.0356 3.6881 -4.2864 25 7 3.5026 -0.8411 -1.1827 26 6 3.9242 -1.5279 0.0651 27 6 5.3529 -2.0254 -0.2695 28 6 5.2345 -2.4443 -1.7529 29 6 4.0176 -1.6708 -2.2934 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.7694 1.9236 0.9399 35 1 3.1245 1.4444 -0.1100 36 1 1.5897 1.9871 -0.8299 37 1 -0.2924 3.1236 -4.4731 38 1 -0.6760 2.7241 -2.7815 39 1 1.0206 2.8865 -3.2948 40 1 -0.1859 1.2117 -7.1724 41 1 -1.3442 2.5630 -7.1461 42 1 -0.0897 2.4416 -5.8892 43 1 -3.0067 0.6965 -7.2733 44 1 -3.3379 -0.1946 -5.7684 45 1 -6.6825 0.6723 -7.0412 46 1 3.9463 -0.8284 0.9007 47 1 3.2654 -2.3685 0.2830 48 1 5.6193 -2.8799 0.3525 49 1 6.0787 -1.2207 -0.1527 50 1 5.0651 -3.5182 -1.8304 51 1 6.1349 -2.1623 -2.2987 52 1 3.2489 -2.3704 -2.6216 53 1 4.3217 -1.0330 -3.1233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745087442.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:47 Heat of formation + Delta-G solvation = -129.423928 kcal Electronic energy + Delta-G solvation = -31894.706585 eV Core-core repulsion = 27766.132083 eV Total energy + Delta-G solvation = -4128.574501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.23393 -40.85286 -39.72070 -37.54068 -36.74846 -36.70105 -34.88350 -33.04573 -32.23068 -29.86782 -29.67628 -28.11156 -27.75282 -27.53258 -25.98371 -24.54707 -23.01416 -22.51372 -21.52307 -20.59666 -20.36514 -18.84629 -18.70214 -18.23535 -17.77502 -17.34371 -16.92626 -16.91278 -16.53309 -16.31461 -15.95891 -15.42426 -14.95659 -14.84775 -14.59276 -14.58010 -14.26320 -14.12366 -14.00797 -13.68841 -13.63377 -13.43119 -13.36637 -13.22171 -13.10062 -12.99929 -12.91853 -12.77613 -12.62637 -12.45011 -12.28745 -12.21596 -12.12269 -11.95223 -11.91622 -11.75088 -11.72848 -11.69558 -11.43088 -11.23144 -10.65300 -10.63208 -9.53747 -9.51701 -8.24104 -6.38977 1.07984 1.20294 1.37075 1.40060 1.49840 1.58565 2.28613 2.41670 2.83901 3.06127 3.37926 3.44829 3.59258 3.67788 3.76583 3.80908 3.85352 3.95874 4.06366 4.18903 4.21920 4.32834 4.35094 4.51198 4.54929 4.57018 4.61692 4.66742 4.68724 4.80947 4.82977 4.91714 4.92452 4.97920 5.00037 5.03256 5.07125 5.08440 5.12408 5.18098 5.19455 5.28222 5.31096 5.40865 5.50192 5.56227 5.75908 5.77429 5.86986 6.01931 6.53152 6.68740 6.69880 7.18364 7.34696 8.83589 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020407 B = 0.002623 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.752843 B =10670.520389 C =11142.970886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.075 4.075 3 C -0.142 4.142 4 C 0.092 3.908 5 H 0.080 0.920 6 C 0.467 3.533 7 O -0.510 6.510 8 O -0.333 6.333 9 C 0.079 3.921 10 H 0.115 0.885 11 C -0.160 4.160 12 C 0.502 3.498 13 O -0.576 6.576 14 N -0.600 5.600 15 C 0.062 3.938 16 C 0.259 3.741 17 C -0.543 4.543 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.263 1.263 23 H -0.282 1.282 24 H -0.271 1.271 25 N -0.505 5.505 26 C 0.032 3.968 27 C -0.116 4.116 28 C -0.127 4.127 29 C 0.031 3.969 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.031 0.969 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.029 0.971 44 H 0.000 1.000 45 H 0.268 0.732 46 H 0.100 0.900 47 H 0.056 0.944 48 H 0.093 0.907 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.077 0.923 52 H 0.031 0.969 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.658 -1.303 13.856 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.093 4.093 3 C -0.199 4.199 4 C -0.018 4.018 5 H 0.098 0.902 6 C 0.310 3.690 7 O -0.397 6.397 8 O -0.249 6.249 9 C 0.020 3.980 10 H 0.133 0.867 11 C -0.217 4.217 12 C 0.289 3.711 13 O -0.456 6.456 14 N -0.333 5.333 15 C -0.079 4.079 16 C 0.138 3.862 17 C -0.582 4.582 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.793 3.207 22 H -0.188 1.188 23 H -0.208 1.208 24 H -0.196 1.196 25 N -0.231 5.231 26 C -0.094 4.094 27 C -0.154 4.154 28 C -0.165 4.165 29 C -0.097 4.097 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.047 0.953 44 H 0.018 0.982 45 H 0.076 0.924 46 H 0.118 0.882 47 H 0.074 0.926 48 H 0.111 0.889 49 H 0.095 0.905 50 H 0.094 0.906 51 H 0.096 0.904 52 H 0.049 0.951 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.564 -1.081 13.790 27.324 hybrid contribution -1.582 -0.451 -0.573 1.741 sum 21.983 -1.532 13.217 25.696 Atomic orbital electron populations 1.22048 0.94388 1.02449 1.02860 1.21166 0.95774 0.97245 0.95155 1.21807 1.01852 0.94488 1.01790 1.21675 0.90871 0.98111 0.91186 0.90238 1.24029 0.80087 0.77828 0.87078 1.90597 1.50623 1.49173 1.49292 1.86743 1.28430 1.67453 1.42270 1.22472 0.94684 0.93426 0.87380 0.86730 1.22238 1.04370 0.90738 1.04362 1.20618 0.88049 0.80738 0.81704 1.90654 1.57481 1.38107 1.59328 1.48044 1.16168 1.52366 1.16688 1.22251 0.93651 0.96048 0.95963 1.18855 0.77960 0.95428 0.93941 1.21680 0.93973 1.07622 1.34892 0.92402 1.25871 0.99974 0.98403 0.94875 1.70053 1.16398 1.31284 1.39074 0.85393 0.77581 0.78794 0.78928 1.18753 1.20751 1.19563 1.64569 1.06620 1.47872 1.04018 1.23444 0.96480 0.97532 0.91982 1.22478 0.95914 1.01754 0.95252 1.22401 0.97277 0.99819 0.97020 1.22940 0.97153 0.94674 0.94900 0.92806 0.90747 0.92728 0.87033 0.90700 0.91284 0.94955 0.88206 0.91659 0.89149 0.91135 0.90201 0.88601 0.95293 0.98193 0.92352 0.88182 0.92609 0.88893 0.90467 0.90564 0.90446 0.95092 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 8.85 71.98 0.64 -2.98 16 2 C -0.07 -1.40 2.47 -10.79 -0.03 -1.42 16 3 C -0.14 -2.69 8.68 71.98 0.62 -2.06 16 4 C 0.09 2.06 1.52 44.17 0.07 2.13 16 5 H 0.08 1.78 7.91 -2.39 -0.02 1.76 16 6 C 0.47 13.62 5.58 71.24 0.40 14.02 16 7 O -0.51 -16.05 14.05 21.98 0.31 -15.75 16 8 O -0.33 -11.24 6.61 -45.12 -0.30 -11.54 16 9 C 0.08 2.64 2.14 29.85 0.06 2.70 16 10 H 0.12 3.50 6.62 -2.39 -0.02 3.49 16 11 C -0.16 -4.41 9.13 71.98 0.66 -3.75 16 12 C 0.50 22.17 7.02 87.66 0.62 22.78 16 13 O -0.58 -31.27 16.08 15.58 0.25 -31.02 16 14 N -0.60 -26.10 2.86 -851.10 -2.43 -28.53 16 15 C 0.06 1.92 9.82 127.77 1.26 3.17 16 16 C 0.26 14.09 5.20 85.64 0.45 14.53 16 17 C -0.54 -31.09 9.39 25.60 0.24 -30.85 16 18 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 19 C 0.01 0.45 5.46 84.66 0.46 0.91 16 20 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 21 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 N -0.51 -9.92 4.22 -862.26 -3.64 -13.56 16 26 C 0.03 0.41 5.23 86.65 0.45 0.87 16 27 C -0.12 -1.24 7.06 31.80 0.22 -1.01 16 28 C -0.13 -1.72 6.93 31.47 0.22 -1.51 16 29 C 0.03 0.63 5.63 86.45 0.49 1.12 16 30 H 0.05 1.58 5.48 -2.39 -0.01 1.57 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 1.50 6.55 -2.39 -0.02 1.48 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.32 7.62 -2.39 -0.02 1.30 16 36 H 0.03 0.74 7.31 -2.39 -0.02 0.72 16 37 H 0.10 2.51 5.65 -2.39 -0.01 2.50 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.08 2.45 8.08 -2.39 -0.02 2.44 16 42 H 0.10 2.34 4.30 -2.39 -0.01 2.33 16 43 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 44 H 0.00 0.00 7.36 -2.39 -0.02 -0.02 16 45 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.10 1.05 7.53 -2.39 -0.02 1.03 16 47 H 0.06 0.66 8.02 -2.39 -0.02 0.64 16 48 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 50 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.03 0.67 7.62 -2.39 -0.02 0.65 16 53 H 0.07 1.71 7.24 -2.39 -0.02 1.69 16 Total: -1.00 -75.76 410.97 4.20 -71.56 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.88 Total: 19.44 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.82 Total: 18.64 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -5.79 Total: -97.94 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: 0.26 Total: -58.30 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -75.76 4.20 -71.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745087442.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.866 kcal (2) G-P(sol) polarization free energy of solvation -75.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds