Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47123 * 2 1 4 4 C 1.50702 * 109.47288 * 119.99559 * 2 1 3 5 5 O 1.21279 * 119.99894 * 103.95256 * 4 2 1 6 6 N 1.34775 * 120.00220 * 283.67573 * 4 2 1 7 7 C 1.46503 * 119.99568 * 0.27542 * 6 4 2 8 8 C 1.46501 * 120.00197 * 180.27447 * 6 4 2 9 9 C 1.50696 * 109.47057 * 90.00152 * 8 6 4 10 10 H 1.07997 * 120.00310 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99816 * 180.02562 * 9 8 6 12 12 N 1.31514 * 120.00289 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00151 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47109 * 59.99581 * 13 11 9 15 15 H 1.48497 * 109.47415 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46829 * 299.99564 * 13 11 9 17 17 N 1.46902 * 109.47513 * 239.99897 * 2 1 3 18 18 C 1.46843 * 110.99752 * 76.53869 * 17 2 1 19 19 C 1.53042 * 109.52264 * 174.16284 * 18 17 2 20 20 C 1.53116 * 109.27935 * 59.17795 * 19 18 17 21 21 C 1.52992 * 109.52433 * 182.44204 * 20 19 18 22 22 C 1.53002 * 109.62941 * 299.99173 * 21 20 19 23 23 O 1.43756 * 109.63434 * 179.75017 * 21 20 19 24 24 C 1.44783 * 104.81883 * 215.81160 * 23 21 20 25 25 C 1.54916 * 101.72214 * 36.09824 * 24 23 21 26 26 O 1.43371 * 109.63451 * 60.38679 * 21 20 19 27 27 C 1.53120 * 109.16189 * 302.35150 * 20 19 18 28 28 C 1.46843 * 110.99862 * 312.33120 * 17 2 1 29 29 H 1.09004 * 109.46682 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47210 * 299.99714 * 1 2 3 31 31 H 1.08992 * 109.47113 * 60.00634 * 1 2 3 32 32 H 1.08995 * 109.47342 * 90.00544 * 7 6 4 33 33 H 1.09006 * 109.46591 * 209.99951 * 7 6 4 34 34 H 1.08994 * 109.47425 * 329.99640 * 7 6 4 35 35 H 1.09003 * 109.46786 * 210.00216 * 8 6 4 36 36 H 1.09004 * 109.46852 * 329.99529 * 8 6 4 37 37 H 0.96999 * 120.00447 * 180.02562 * 12 11 9 38 38 H 1.08991 * 109.46740 * 294.17719 * 18 17 2 39 39 H 1.09002 * 109.46395 * 54.14674 * 18 17 2 40 40 H 1.09006 * 109.49830 * 299.24276 * 19 18 17 41 41 H 1.08996 * 109.50239 * 179.12489 * 19 18 17 42 42 H 1.09001 * 109.57315 * 62.28388 * 20 19 18 43 43 H 1.09002 * 109.46584 * 60.00128 * 22 21 20 44 44 H 1.08999 * 109.47307 * 179.97438 * 22 21 20 45 45 H 1.08998 * 109.46925 * 300.00118 * 22 21 20 46 46 H 1.09000 * 110.97266 * 277.99751 * 24 23 21 47 47 H 1.08994 * 111.01361 * 154.22730 * 24 23 21 48 48 H 1.09002 * 110.69925 * 206.04704 * 25 24 23 49 49 H 1.08998 * 110.84128 * 82.90955 * 25 24 23 50 50 H 1.09006 * 109.50333 * 297.71101 * 27 20 19 51 51 H 1.09000 * 109.50807 * 177.59651 * 27 20 19 52 52 H 1.09007 * 109.46232 * 305.85574 * 28 17 2 53 53 H 1.08998 * 109.46338 * 65.81704 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.4733 -1.8367 1.1429 6 7 1.9969 -0.0918 2.4274 7 6 1.4643 1.2689 2.5332 8 6 2.4908 -0.7800 3.6226 9 6 3.9590 -0.4895 3.7989 10 1 4.4729 0.1441 3.0912 11 6 4.6464 -1.0334 4.8631 12 7 4.0208 -1.8054 5.7247 13 14 6.4665 -0.6739 5.0813 14 1 6.6671 0.7894 5.2348 15 1 6.9674 -1.3725 6.2922 16 1 7.2120 -1.1535 3.8899 17 7 2.0198 -0.6925 -1.1994 18 6 1.8943 0.1609 -2.3878 19 6 2.5446 -0.5332 -3.5868 20 6 1.8553 -1.8791 -3.8269 21 6 2.5406 -2.6051 -4.9861 22 6 2.4459 -1.7535 -6.2537 23 8 1.8989 -3.8718 -5.2098 24 6 2.9706 -4.7679 -5.5901 25 6 4.1346 -4.2611 -4.7023 26 8 3.9182 -2.8360 -4.6628 27 6 1.9581 -2.7299 -2.5579 28 6 1.3248 -1.9721 -1.3888 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.3928 1.2256 2.7284 33 1 1.9617 1.7912 3.3505 34 1 1.6422 1.8024 1.5995 35 1 1.9432 -0.4281 4.4969 36 1 2.3438 -1.8543 3.5101 37 1 4.5043 -2.1878 6.4736 38 1 0.8396 0.3374 -2.5986 39 1 2.3923 1.1131 -2.2054 40 1 3.6026 -0.6976 -3.3822 41 1 2.4377 0.0936 -4.4721 42 1 0.8058 -1.7136 -4.0703 43 1 2.9377 -0.7954 -6.0853 44 1 2.9353 -2.2728 -7.0777 45 1 1.3977 -1.5855 -6.5010 46 1 3.2116 -4.6611 -6.6478 47 1 2.7193 -5.8013 -5.3516 48 1 5.0967 -4.4920 -5.1596 49 1 4.0730 -4.6879 -3.7013 50 1 3.0068 -2.9289 -2.3372 51 1 1.4321 -3.6727 -2.7082 52 1 1.4092 -2.5692 -0.4807 53 1 0.2727 -1.7857 -1.6041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760900638.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -136.714389 kcal Electronic energy + Delta-G solvation = -32017.868686 eV Core-core repulsion = 27888.978046 eV Total energy + Delta-G solvation = -4128.890639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.88706 -41.10698 -39.24270 -36.54288 -36.00829 -35.77208 -34.69508 -32.64005 -31.82879 -30.39924 -29.45846 -29.20679 -27.41479 -26.41556 -25.34234 -24.34283 -23.82308 -23.45459 -21.80162 -20.46211 -19.77533 -18.68898 -18.26084 -17.88425 -17.54734 -17.30301 -16.75905 -16.47990 -16.16259 -15.85595 -15.65873 -15.58365 -15.21257 -14.95539 -14.72814 -14.58139 -14.27481 -14.04759 -13.98136 -13.82425 -13.72225 -13.45409 -13.31681 -13.19423 -13.16576 -13.09155 -12.89820 -12.80302 -12.63120 -12.55781 -12.48846 -12.32431 -12.18156 -12.04665 -11.81828 -11.69964 -11.46209 -11.31400 -11.07676 -10.64369 -10.53300 -10.22827 -9.38453 -9.08212 -8.22094 -6.36923 1.35071 1.40207 1.47239 1.90176 2.29511 2.41873 2.47501 2.97063 3.04482 3.06974 3.60848 3.68509 3.70509 3.78778 3.91763 4.02495 4.05280 4.08262 4.19566 4.29163 4.33361 4.39777 4.45038 4.46366 4.52507 4.59764 4.63259 4.71022 4.72176 4.75785 4.77440 4.78894 4.80274 4.93364 4.96124 4.97411 5.00751 5.02751 5.06368 5.13506 5.19123 5.23611 5.26630 5.31801 5.49414 5.57683 5.86830 6.07669 6.08722 6.19487 6.28950 6.71355 6.85857 7.29643 7.58218 8.84582 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.002883 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.259445 B = 9709.092141 C =10799.472948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.122 0.878 4 C 0.501 3.499 5 O -0.582 6.582 6 N -0.612 5.612 7 C 0.078 3.922 8 C 0.262 3.738 9 C -0.542 4.542 10 H 0.051 0.949 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.258 1.258 15 H -0.277 1.277 16 H -0.280 1.280 17 N -0.540 5.540 18 C 0.057 3.943 19 C -0.100 4.100 20 C -0.084 4.084 21 C 0.254 3.746 22 C -0.166 4.166 23 O -0.389 6.389 24 C 0.017 3.983 25 C 0.012 3.988 26 O -0.392 6.392 27 C -0.094 4.094 28 C 0.061 3.939 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.023 0.977 36 H -0.006 1.006 37 H 0.267 0.733 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.122 0.878 48 H 0.118 0.882 49 H 0.062 0.938 50 H 0.043 0.957 51 H 0.062 0.938 52 H 0.055 0.945 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 4.074 -26.115 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.036 4.036 3 H 0.139 0.861 4 C 0.289 3.711 5 O -0.462 6.462 6 N -0.344 5.344 7 C -0.064 4.064 8 C 0.141 3.859 9 C -0.580 4.580 10 H 0.069 0.931 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.183 1.183 15 H -0.202 1.202 16 H -0.206 1.206 17 N -0.265 5.265 18 C -0.070 4.070 19 C -0.138 4.138 20 C -0.103 4.103 21 C 0.178 3.822 22 C -0.224 4.224 23 O -0.310 6.310 24 C -0.059 4.059 25 C -0.064 4.064 26 O -0.314 6.314 27 C -0.132 4.132 28 C -0.067 4.067 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.041 0.959 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.140 0.860 48 H 0.136 0.864 49 H 0.080 0.920 50 H 0.062 0.938 51 H 0.081 0.919 52 H 0.073 0.927 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.142 3.424 -25.845 27.031 hybrid contribution 0.399 -0.513 0.808 1.037 sum -6.743 2.911 -25.037 26.092 Atomic orbital electron populations 1.22323 0.93084 1.02767 1.04765 1.21605 0.95764 0.98294 0.87911 0.86067 1.21240 0.78205 0.86454 0.85154 1.90586 1.47990 1.21746 1.85885 1.48163 1.61171 1.17030 1.08042 1.21979 0.99046 0.81622 1.03778 1.18689 0.93419 0.91529 0.82271 1.21679 0.95822 1.30535 1.09991 0.93110 1.25859 1.03448 0.94533 0.95328 1.70043 1.38481 1.33395 1.15004 0.85486 0.78930 0.79152 0.77353 1.18264 1.20159 1.20615 1.61633 1.57911 1.04466 1.02506 1.22217 1.00129 0.95964 0.88672 1.21567 0.99769 0.94604 0.97813 1.21509 1.00223 0.95542 0.92986 1.23511 0.78433 0.85722 0.94537 1.22381 1.03940 1.00638 0.95423 1.89219 1.31876 1.21016 1.88939 1.24522 0.85239 0.96285 0.99821 1.24332 1.01190 0.80376 1.00496 1.88898 1.27035 1.23763 1.91681 1.21368 1.00314 0.97902 0.93657 1.22079 0.95206 0.90797 0.98616 0.93252 0.90186 0.88718 0.90990 0.91645 0.88978 0.95895 0.98784 0.92405 0.92692 0.89444 0.92640 0.88503 0.89066 0.89773 0.91509 0.89646 0.88975 0.85968 0.86436 0.92006 0.93811 0.91932 0.92664 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 8.20 71.98 0.59 -3.30 16 2 C 0.08 2.28 1.93 44.17 0.09 2.36 16 3 H 0.12 3.04 6.23 -2.39 -0.01 3.03 16 4 C 0.50 21.93 6.84 87.66 0.60 22.52 16 5 O -0.58 -31.89 13.86 -3.03 -0.04 -31.93 16 6 N -0.61 -26.92 2.86 -851.13 -2.43 -29.35 16 7 C 0.08 2.36 9.35 127.77 1.19 3.55 16 8 C 0.26 14.72 5.16 85.63 0.44 15.16 16 9 C -0.54 -32.45 9.39 25.60 0.24 -32.21 16 10 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 11 C 0.01 0.42 5.46 84.65 0.46 0.88 16 12 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 13 Si 0.97 46.40 29.54 68.60 2.03 48.43 16 14 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 16 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 17 N -0.54 -16.50 4.36 -875.52 -3.82 -20.31 16 18 C 0.06 1.21 5.22 86.33 0.45 1.66 16 19 C -0.10 -2.07 4.84 30.65 0.15 -1.92 16 20 C -0.08 -1.85 1.90 -10.72 -0.02 -1.87 16 21 C 0.25 5.29 0.73 30.59 0.02 5.31 16 22 C -0.17 -2.51 8.84 71.98 0.64 -1.87 16 23 O -0.39 -8.30 10.39 -126.22 -1.31 -9.61 16 24 C 0.02 0.26 7.91 72.64 0.57 0.83 16 25 C 0.01 0.23 8.07 72.64 0.59 0.81 16 26 O -0.39 -9.44 9.45 -126.22 -1.19 -10.63 16 27 C -0.09 -2.74 5.08 30.65 0.16 -2.58 16 28 C 0.06 1.91 4.17 86.33 0.36 2.27 16 29 H 0.05 1.30 6.45 -2.39 -0.02 1.28 16 30 H 0.08 1.65 6.47 -2.39 -0.02 1.64 16 31 H 0.09 1.55 7.09 -2.39 -0.02 1.54 16 32 H 0.07 1.78 7.45 -2.39 -0.02 1.76 16 33 H 0.06 2.09 8.07 -2.38 -0.02 2.07 16 34 H 0.09 2.12 6.02 -2.39 -0.01 2.11 16 35 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 36 H -0.01 -0.39 7.42 -2.38 -0.02 -0.40 16 37 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.05 0.93 7.13 -2.39 -0.02 0.91 16 39 H 0.09 1.64 7.95 -2.39 -0.02 1.62 16 40 H 0.05 1.47 7.64 -2.38 -0.02 1.45 16 41 H 0.10 1.43 6.59 -2.39 -0.02 1.41 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 1.15 6.51 -2.39 -0.02 1.14 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.04 1.53 7.61 -2.38 -0.02 1.51 16 51 H 0.06 1.79 7.77 -2.39 -0.02 1.77 16 52 H 0.05 2.25 5.87 -2.38 -0.01 2.23 16 53 H 0.05 1.24 6.59 -2.39 -0.02 1.22 16 Total: -1.00 -81.64 398.21 0.93 -80.71 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.89 Total: 18.64 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 6.53 Total: 11.60 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -5.96 Total: -107.20 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -2.55 Total: -52.18 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -81.64 0.93 -80.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760900638.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.009 kcal (2) G-P(sol) polarization free energy of solvation -81.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds