Wall clock time and date at job start Sat Apr 11 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47207 * 2 1 4 4 N 1.46502 * 109.47405 * 120.00209 * 2 1 3 5 5 C 1.34780 * 119.99903 * 275.00427 * 4 2 1 6 6 O 1.21281 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99814 * 179.97438 * 5 4 2 8 8 C 1.52997 * 109.47245 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46867 * 60.00011 * 8 7 5 10 10 C 1.52997 * 109.47422 * 179.97438 * 8 7 5 11 11 C 1.53004 * 109.47195 * 300.00123 * 8 7 5 12 12 C 1.50703 * 109.47249 * 240.00475 * 2 1 3 13 13 O 1.20824 * 119.99810 * 240.00103 * 12 2 1 14 14 O 1.34223 * 119.99916 * 59.99611 * 12 2 1 15 15 C 1.45200 * 116.99750 * 180.02562 * 14 12 2 16 16 C 1.53042 * 109.45876 * 270.06587 * 15 14 12 17 17 C 1.53191 * 109.31169 * 178.61283 * 16 15 14 18 18 N 1.46925 * 108.77543 * 54.63997 * 17 16 15 19 19 C 1.36944 * 120.63456 * 126.41165 * 18 17 16 20 20 H 1.08001 * 119.99682 * 331.82990 * 19 18 17 21 21 C 1.38801 * 120.00052 * 151.83012 * 19 18 17 22 22 N 1.31618 * 120.00562 * 343.07028 * 21 19 18 23 23 Si 1.86802 * 119.99892 * 163.07159 * 21 19 18 24 24 H 1.48504 * 109.47070 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47477 * 119.99933 * 23 21 19 26 26 H 1.48509 * 109.47110 * 239.99818 * 23 21 19 27 27 C 1.46927 * 118.74085 * 306.39437 * 18 17 16 28 28 C 1.53045 * 109.45926 * 150.00251 * 15 14 12 29 29 H 1.08999 * 109.46844 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46466 * 299.99858 * 1 2 3 31 31 H 1.08999 * 109.47017 * 59.99626 * 1 2 3 32 32 H 0.96994 * 119.99991 * 94.99555 * 4 2 1 33 33 H 1.09004 * 109.47397 * 300.00011 * 7 5 4 34 34 H 1.09003 * 109.47219 * 59.99722 * 7 5 4 35 35 H 1.09004 * 109.46781 * 60.00192 * 9 8 7 36 36 H 1.08999 * 109.47143 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.47107 * 299.99946 * 9 8 7 38 38 H 1.09003 * 109.46986 * 60.00162 * 10 8 7 39 39 H 1.08994 * 109.47342 * 179.97438 * 10 8 7 40 40 H 1.09004 * 109.47452 * 300.00560 * 10 8 7 41 41 H 1.09004 * 109.46736 * 60.00267 * 11 8 7 42 42 H 1.08999 * 109.46921 * 179.97438 * 11 8 7 43 43 H 1.08989 * 109.46909 * 299.99908 * 11 8 7 44 44 H 1.08996 * 109.46114 * 30.03032 * 15 14 12 45 45 H 1.08993 * 109.50161 * 298.56942 * 16 15 14 46 46 H 1.09003 * 109.49859 * 58.66938 * 16 15 14 47 47 H 1.08998 * 109.59192 * 294.85509 * 17 16 15 48 48 H 1.09001 * 109.70460 * 174.49314 * 17 16 15 49 49 H 0.96996 * 120.00487 * 180.02562 * 22 21 19 50 50 H 1.09010 * 109.58027 * 293.81906 * 27 18 17 51 51 H 1.08994 * 109.70720 * 173.46756 * 27 18 17 52 52 H 1.08993 * 109.49876 * 301.33745 * 28 15 14 53 53 H 1.09003 * 109.49817 * 61.40249 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8590 1.1585 2.4116 7 6 2.6490 -0.7289 3.5877 8 6 2.7011 0.2542 4.7588 9 6 1.2988 0.8057 5.0245 10 6 3.2100 -0.4673 6.0083 11 6 3.6459 1.4075 4.4148 12 6 2.0324 -0.7103 -1.2305 13 8 2.7270 -1.6927 -1.1197 14 8 1.7081 -0.2517 -2.4496 15 6 2.2268 -0.9861 -3.5896 16 6 3.5882 -0.4124 -3.9892 17 6 4.1481 -1.2117 -5.1700 18 7 3.1541 -1.2159 -6.2520 19 6 3.4955 -0.8108 -7.5148 20 1 4.2870 -0.0895 -7.6549 21 6 2.8243 -1.3271 -8.6145 22 7 2.1089 -2.4253 -8.4930 23 14 2.9361 -0.4635 -10.2671 24 1 3.7955 0.7408 -10.1391 25 1 3.5243 -1.3876 -11.2698 26 1 1.5770 -0.0568 -10.7062 27 6 1.7868 -1.6633 -5.9535 28 6 1.2534 -0.8591 -4.7638 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.2491 -1.6318 1.1526 33 1 1.9761 -1.5508 3.8325 34 1 3.6481 -1.1214 3.3985 35 1 0.6258 -0.0160 5.2696 36 1 1.3358 1.5058 5.8591 37 1 0.9359 1.3196 4.1345 38 1 4.2089 -0.8605 5.8193 39 1 3.2476 0.2332 6.8424 40 1 2.5366 -1.2887 6.2532 41 1 3.2828 1.9215 3.5248 42 1 3.6827 2.1082 5.2490 43 1 4.6448 1.0147 4.2256 44 1 2.3397 -2.0371 -3.3237 45 1 3.4721 0.6319 -4.2791 46 1 4.2743 -0.4819 -3.1450 47 1 4.3499 -2.2356 -4.8554 48 1 5.0700 -0.7493 -5.5227 49 1 1.6402 -2.7863 -9.2616 50 1 1.7961 -2.7241 -5.7026 51 1 1.1485 -1.4988 -6.8215 52 1 0.2776 -1.2464 -4.4709 53 1 1.1588 0.1895 -5.0461 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778686079.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:16 Heat of formation + Delta-G solvation = -136.369275 kcal Electronic energy + Delta-G solvation = -30525.359211 eV Core-core repulsion = 26396.483537 eV Total energy + Delta-G solvation = -4128.875674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04406 -41.07708 -39.25595 -37.83187 -37.31769 -36.00514 -34.62357 -32.54361 -32.00423 -31.42152 -28.96351 -28.06363 -27.98889 -27.32388 -25.90858 -24.08836 -23.81218 -22.20127 -21.43936 -21.05905 -20.00823 -18.94369 -18.86452 -18.19197 -17.57852 -17.16754 -16.91256 -16.37775 -16.36116 -15.70276 -15.43159 -15.33541 -15.21930 -15.19886 -14.95419 -14.86615 -14.40396 -14.18424 -14.03449 -13.68006 -13.38467 -13.30189 -13.09481 -13.01158 -12.91215 -12.75638 -12.69894 -12.65168 -12.63434 -12.47596 -12.19480 -12.17092 -12.00821 -11.96839 -11.88198 -11.61880 -11.57735 -11.50456 -11.39433 -11.10160 -10.58282 -10.51924 -10.25649 -8.76964 -7.91824 -5.37629 0.99219 1.25672 1.46934 1.49204 1.59540 1.63932 2.22786 2.49608 3.23584 3.33999 3.58305 3.70001 3.76312 3.81172 3.84230 3.92721 3.98128 4.01740 4.12871 4.30478 4.34048 4.54442 4.59605 4.62948 4.67016 4.69771 4.72025 4.72810 4.80264 4.84956 4.87912 4.90126 4.93150 5.02629 5.02701 5.12670 5.13747 5.17239 5.19975 5.20796 5.34522 5.37448 5.41309 5.44013 5.56739 5.61576 5.67147 5.69003 6.35263 6.42959 6.55135 7.10255 7.20112 7.78456 8.30957 9.15964 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.033245 B = 0.001877 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.035887 B =14915.914347 C =15107.731644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.159 3.841 3 H 0.123 0.877 4 N -0.716 5.716 5 C 0.518 3.482 6 O -0.554 6.554 7 C -0.128 4.128 8 C -0.053 4.053 9 C -0.151 4.151 10 C -0.138 4.138 11 C -0.153 4.153 12 C 0.459 3.541 13 O -0.526 6.526 14 O -0.346 6.346 15 C 0.107 3.893 16 C -0.134 4.134 17 C 0.147 3.853 18 N -0.610 5.610 19 C -0.265 4.265 20 H 0.069 0.931 21 C -0.048 4.048 22 N -0.934 5.934 23 Si 0.969 3.031 24 H -0.267 1.267 25 H -0.293 1.293 26 H -0.288 1.288 27 C 0.180 3.820 28 C -0.122 4.122 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.415 0.585 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.016 0.984 48 H 0.065 0.935 49 H 0.252 0.748 50 H 0.002 0.998 51 H 0.068 0.932 52 H 0.080 0.920 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.253 3.695 27.904 28.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.052 3.948 3 H 0.141 0.859 4 N -0.371 5.371 5 C 0.307 3.693 6 O -0.432 6.432 7 C -0.168 4.168 8 C -0.053 4.053 9 C -0.208 4.208 10 C -0.196 4.196 11 C -0.210 4.210 12 C 0.302 3.698 13 O -0.416 6.416 14 O -0.262 6.262 15 C 0.053 3.947 16 C -0.173 4.173 17 C 0.021 3.979 18 N -0.334 5.334 19 C -0.395 4.395 20 H 0.086 0.914 21 C -0.244 4.244 22 N -0.580 5.580 23 Si 0.797 3.203 24 H -0.191 1.191 25 H -0.220 1.220 26 H -0.215 1.215 27 C 0.054 3.946 28 C -0.161 4.161 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.253 0.747 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.034 0.966 48 H 0.083 0.917 49 H 0.061 0.939 50 H 0.021 0.979 51 H 0.087 0.913 52 H 0.098 0.902 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.307 4.158 27.794 28.198 hybrid contribution 0.304 -0.465 -1.361 1.470 sum -2.003 3.693 26.433 26.765 Atomic orbital electron populations 1.22074 0.90403 1.03776 1.04643 1.20331 0.97177 0.97272 0.79998 0.85921 1.45971 1.67913 1.15147 1.08115 1.21231 0.76313 0.87089 0.84618 1.90606 1.50596 1.17124 1.84884 1.21862 1.04425 0.99621 0.90877 1.20305 0.96246 0.94655 0.94104 1.22060 0.95671 1.00961 1.02091 1.21857 1.01407 1.00311 0.95993 1.22076 0.98453 0.98264 1.02206 1.24081 0.77042 0.82679 0.86035 1.90643 1.36574 1.27010 1.87331 1.86542 1.69163 1.55711 1.14759 1.22674 0.94473 0.95238 0.82363 1.22285 0.95346 1.00965 0.98727 1.20949 0.92556 0.96523 0.87888 1.44376 1.06058 1.76791 1.06136 1.19539 1.18760 1.17785 0.83388 0.91369 1.25813 1.01022 0.96408 1.01123 1.70161 1.36468 1.20653 1.30713 0.85194 0.77333 0.78178 0.79631 1.19141 1.21958 1.21462 1.20600 0.86128 0.93265 0.94649 1.22186 0.97995 1.02235 0.93665 0.91262 0.90114 0.89602 0.74721 0.86516 0.87249 0.92533 0.93067 0.91945 0.92000 0.92368 0.91607 0.92119 0.92937 0.93013 0.91173 0.91162 0.91195 0.96623 0.91675 0.93883 0.97947 0.91350 0.90163 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.42 71.98 0.68 -1.84 16 2 C 0.16 3.17 3.09 44.25 0.14 3.31 16 3 H 0.12 2.56 7.58 -2.39 -0.02 2.54 16 4 N -0.72 -12.27 4.95 -446.08 -2.21 -14.48 16 5 C 0.52 8.94 7.21 87.66 0.63 9.57 16 6 O -0.55 -12.65 11.01 -3.03 -0.03 -12.68 16 7 C -0.13 -1.44 4.77 29.85 0.14 -1.30 16 8 C -0.05 -0.67 0.77 -52.18 -0.04 -0.71 16 9 C -0.15 -2.20 8.17 71.98 0.59 -1.61 16 10 C -0.14 -1.26 8.47 71.98 0.61 -0.65 16 11 C -0.15 -2.43 8.18 71.98 0.59 -1.84 16 12 C 0.46 12.04 7.29 71.24 0.52 12.56 16 13 O -0.53 -16.02 15.06 21.97 0.33 -15.68 16 14 O -0.35 -10.18 9.78 -51.35 -0.50 -10.68 16 15 C 0.11 3.67 2.41 30.62 0.07 3.75 16 16 C -0.13 -4.71 5.72 30.67 0.18 -4.54 16 17 C 0.15 6.14 6.52 86.36 0.56 6.70 16 18 N -0.61 -30.40 2.99 -699.10 -2.09 -32.49 16 19 C -0.26 -14.38 9.58 84.03 0.81 -13.57 16 20 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 21 C -0.05 -2.64 4.92 84.86 0.42 -2.23 16 22 N -0.93 -54.26 11.19 21.65 0.24 -54.02 16 23 Si 0.97 44.18 29.59 68.60 2.03 46.20 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 26 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 27 C 0.18 8.49 5.30 86.36 0.46 8.94 16 28 C -0.12 -4.50 5.74 30.67 0.18 -4.32 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.41 8.11 -2.39 -0.02 1.39 16 32 H 0.42 6.36 7.79 -92.71 -0.72 5.63 16 33 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 1.22 5.51 -2.39 -0.01 1.20 16 38 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.06 1.28 5.51 -2.38 -0.01 1.26 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 2.58 7.16 -2.39 -0.02 2.56 16 45 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.06 2.63 7.93 -2.39 -0.02 2.61 16 49 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 50 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 51 H 0.07 3.62 6.06 -2.39 -0.01 3.61 16 52 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 53 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -65.25 413.72 4.45 -60.80 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.16 Total: 20.82 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.52 Total: 12.22 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -4.06 Total: -100.99 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.20 Total: -39.05 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -65.25 4.45 -60.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778686079.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.573 kcal (2) G-P(sol) polarization free energy of solvation -65.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds