Wall clock time and date at job start Sat Apr 11 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47211 * 2 1 4 4 C 1.46497 * 120.00142 * 95.38832 * 3 2 1 5 5 C 1.50705 * 109.47231 * 270.00407 * 4 3 2 6 6 H 1.07996 * 119.99833 * 0.27003 * 5 4 3 7 7 C 1.37879 * 119.99884 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99840 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00095 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47077 * 90.00259 * 9 7 5 11 11 H 1.48497 * 109.47246 * 210.00228 * 9 7 5 12 12 H 1.48504 * 109.47324 * 330.00506 * 9 7 5 13 13 C 1.34777 * 119.99662 * 275.39253 * 3 2 1 14 14 O 1.21283 * 119.99792 * 175.59198 * 13 3 2 15 15 C 1.50700 * 120.00174 * 355.59392 * 13 3 2 16 16 H 1.09001 * 112.73836 * 346.43823 * 15 13 3 17 17 N 1.47068 * 113.46414 * 215.69703 * 15 13 3 18 18 C 1.34778 * 136.06023 * 92.37320 * 17 15 13 19 19 O 1.21517 * 119.99956 * 0.02562 * 18 17 15 20 20 O 1.34631 * 120.00314 * 179.97438 * 18 17 15 21 21 C 1.45198 * 117.00052 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.47484 * 60.00278 * 21 20 18 23 23 C 1.53009 * 109.47149 * 180.02562 * 21 20 18 24 24 C 1.53007 * 109.47108 * 300.00097 * 21 20 18 25 25 C 1.47060 * 87.88627 * 272.33689 * 17 15 13 26 26 C 1.53496 * 113.47032 * 117.26068 * 15 13 3 27 27 C 1.52997 * 114.20381 * 202.29688 * 26 15 13 28 28 C 1.53001 * 114.20454 * 335.12691 * 26 15 13 29 29 H 1.09000 * 109.46895 * 65.06927 * 1 2 3 30 30 H 1.09001 * 109.46878 * 185.06409 * 1 2 3 31 31 H 1.08993 * 109.47496 * 305.06675 * 1 2 3 32 32 H 1.09001 * 109.47486 * 239.99394 * 2 1 3 33 33 H 1.09008 * 109.46963 * 119.99574 * 2 1 3 34 34 H 1.08999 * 109.47168 * 150.00465 * 4 3 2 35 35 H 1.09001 * 109.47234 * 30.00275 * 4 3 2 36 36 H 0.96995 * 120.00291 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47083 * 59.99482 * 22 21 20 38 38 H 1.08994 * 109.47471 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.46470 * 300.00108 * 22 21 20 40 40 H 1.09002 * 109.46529 * 60.00071 * 23 21 20 41 41 H 1.08994 * 109.46956 * 179.97438 * 23 21 20 42 42 H 1.08999 * 109.46713 * 300.00087 * 23 21 20 43 43 H 1.08997 * 109.46888 * 60.00091 * 24 21 20 44 44 H 1.09003 * 109.46783 * 180.02562 * 24 21 20 45 45 H 1.08999 * 109.46881 * 300.00032 * 24 21 20 46 46 H 1.09003 * 113.46857 * 87.65814 * 25 17 15 47 47 H 1.08999 * 113.47029 * 218.04290 * 25 17 15 48 48 H 1.08998 * 109.46929 * 60.00724 * 27 26 15 49 49 H 1.09008 * 109.46509 * 179.97438 * 27 26 15 50 50 H 1.08993 * 109.47469 * 299.99613 * 27 26 15 51 51 H 1.08996 * 109.47547 * 60.47716 * 28 26 15 52 52 H 1.08997 * 109.46976 * 180.47784 * 28 26 15 53 53 H 1.09000 * 109.46851 * 300.47284 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3749 2.0321 1.2631 5 6 1.1634 2.7268 1.8297 6 1 0.2211 2.6837 1.3039 7 6 1.2570 3.4131 3.0219 8 7 0.1997 4.0189 3.5166 9 14 2.8851 3.4813 3.9350 10 1 3.6589 4.6642 3.4796 11 1 2.6303 3.5883 5.3940 12 1 3.6606 2.2457 3.6573 13 6 2.1396 2.0530 -1.1621 14 8 2.4670 3.2208 -1.1561 15 6 1.8681 1.3533 -2.4689 16 1 1.8158 0.2697 -2.3636 17 7 2.7472 1.7937 -3.5626 18 6 3.9259 1.3953 -4.0807 19 8 4.5056 0.4384 -3.6064 20 8 4.4606 2.0568 -5.1242 21 6 5.7320 1.5716 -5.6308 22 6 5.5754 0.1234 -6.0988 23 6 6.1783 2.4427 -6.8069 24 6 6.7823 1.6380 -4.5201 25 6 1.7736 2.8597 -3.8429 26 6 0.6887 1.9507 -3.2488 27 6 0.0530 0.9913 -4.2569 28 6 -0.3340 2.6819 -2.3768 29 1 -0.3633 0.4332 -0.9319 30 1 -0.3633 -1.0237 0.0907 31 1 -0.3634 0.5904 0.8410 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.1631 2.7636 1.0850 35 1 2.7281 1.2824 1.9711 36 1 0.2656 4.5020 4.3550 37 1 4.8272 0.0761 -6.8899 38 1 6.5299 -0.2409 -6.4786 39 1 5.2577 -0.4968 -5.2606 40 1 6.2899 3.4743 -6.4730 41 1 7.1328 2.0788 -7.1868 42 1 5.4301 2.3958 -7.5981 43 1 6.4645 1.0178 -3.6821 44 1 7.7368 1.2742 -4.9006 45 1 6.8938 2.6698 -4.1868 46 1 1.9447 3.7671 -3.2636 47 1 1.6408 3.0576 -4.9065 48 1 -0.3223 0.1115 -3.7342 49 1 -0.7721 1.4916 -4.7640 50 1 0.7999 0.6874 -4.9901 51 1 0.1531 3.5105 -1.8628 52 1 -1.1381 3.0659 -3.0044 53 1 -0.7455 1.9900 -1.6419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793154318.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:31 Heat of formation + Delta-G solvation = -92.100755 kcal Electronic energy + Delta-G solvation = -32693.078604 eV Core-core repulsion = 28566.122557 eV Total energy + Delta-G solvation = -4126.956047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.77212 -41.39803 -39.54032 -37.78029 -37.06510 -35.17467 -34.79793 -33.49464 -31.91901 -30.25679 -28.53272 -28.40493 -28.31979 -28.16606 -27.61704 -24.52687 -24.23488 -23.01007 -21.05371 -20.68020 -19.29119 -19.07621 -18.74879 -18.39521 -17.87514 -17.23007 -17.02258 -16.40885 -16.34454 -15.93573 -15.66416 -15.36469 -15.15903 -14.86543 -14.66078 -14.59896 -14.52860 -14.24800 -13.90680 -13.48482 -13.41422 -13.36995 -13.26841 -13.19427 -13.00783 -12.94452 -12.89370 -12.86379 -12.64406 -12.60682 -12.54089 -12.39457 -12.27587 -12.06350 -12.03725 -11.83828 -11.63960 -11.44636 -11.29012 -11.26593 -11.04078 -10.80795 -9.76012 -9.50039 -8.31508 -6.34021 0.64650 1.30108 1.33510 1.40975 1.58497 1.64708 2.21367 2.30114 2.73903 2.99757 3.02022 3.41759 3.71004 3.73903 3.77649 3.78622 3.91362 4.05481 4.08696 4.10988 4.22564 4.41636 4.46203 4.55672 4.59178 4.60486 4.69935 4.72717 4.73430 4.74687 4.80588 4.82940 4.84926 4.86088 4.93897 4.96664 5.00053 5.02028 5.08917 5.09640 5.24480 5.29207 5.31052 5.40366 5.43151 5.45375 5.54978 5.62263 6.25242 6.46022 6.60681 6.67421 7.11304 7.19581 7.32627 8.84427 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.003632 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.623213 B = 7708.069740 C = 8693.709414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 N -0.591 5.591 4 C 0.224 3.776 5 C -0.519 4.519 6 H 0.045 0.955 7 C 0.016 3.984 8 N -0.940 5.940 9 Si 0.935 3.065 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.245 1.245 13 C 0.505 3.495 14 O -0.574 6.574 15 C 0.137 3.863 16 H 0.123 0.877 17 N -0.617 5.617 18 C 0.677 3.323 19 O -0.589 6.589 20 O -0.363 6.363 21 C 0.120 3.880 22 C -0.176 4.176 23 C -0.133 4.133 24 C -0.182 4.182 25 C 0.109 3.891 26 C -0.060 4.060 27 C -0.115 4.115 28 C -0.142 4.142 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.039 0.961 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.010 0.990 35 H 0.047 0.953 36 H 0.267 0.733 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.098 0.902 45 H 0.051 0.949 46 H 0.076 0.924 47 H 0.108 0.892 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.060 0.940 51 H 0.033 0.967 52 H 0.096 0.904 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.858 -10.282 -22.510 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.322 5.322 4 C 0.102 3.898 5 C -0.558 4.558 6 H 0.063 0.937 7 C -0.182 4.182 8 N -0.580 5.580 9 Si 0.759 3.241 10 H -0.207 1.207 11 H -0.200 1.200 12 H -0.169 1.169 13 C 0.291 3.709 14 O -0.453 6.453 15 C 0.030 3.970 16 H 0.141 0.859 17 N -0.357 5.357 18 C 0.435 3.565 19 O -0.481 6.481 20 O -0.278 6.278 21 C 0.084 3.916 22 C -0.233 4.233 23 C -0.190 4.190 24 C -0.239 4.239 25 C -0.013 4.013 26 C -0.061 4.061 27 C -0.172 4.172 28 C -0.199 4.199 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.028 0.972 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.126 0.874 48 H 0.099 0.901 49 H 0.111 0.889 50 H 0.079 0.921 51 H 0.052 0.948 52 H 0.115 0.885 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.467 -9.958 -22.361 25.081 hybrid contribution 0.783 0.730 1.488 1.833 sum 6.250 -9.228 -20.873 23.662 Atomic orbital electron populations 1.22285 0.94687 1.03297 1.02282 1.21878 0.95819 0.80771 1.03925 1.48039 1.63103 1.14880 1.06141 1.19395 0.95105 0.93237 0.82075 1.21451 0.96262 1.32070 1.06001 0.93706 1.25676 0.99770 0.94549 0.98210 1.70013 1.31235 1.35552 1.21246 0.85910 0.80297 0.79762 0.78162 1.20668 1.19952 1.16874 1.20847 0.77455 0.86619 0.85994 1.90630 1.49221 1.17816 1.87655 1.22780 0.88068 1.01313 0.84824 0.85935 1.48080 1.18786 1.35520 1.33340 1.17440 0.78944 0.80849 0.79304 1.90876 1.61214 1.31023 1.64957 1.86330 1.39398 1.56747 1.45340 1.22544 0.78390 0.96148 0.94483 1.22447 1.04226 0.94439 1.02153 1.21879 1.03046 0.99239 0.94815 1.22496 0.99884 1.02210 0.99343 1.23472 0.83193 0.91590 1.03041 1.22185 0.91817 0.96438 0.95699 1.21562 1.00912 0.98068 0.96686 1.21821 0.98687 0.99930 0.99493 0.91748 0.88759 0.94214 0.88819 0.89440 0.97154 0.93548 0.92417 0.91289 0.88702 0.92152 0.91872 0.87462 0.90610 0.92652 0.88307 0.92990 0.90559 0.87370 0.90110 0.88856 0.92137 0.94780 0.88535 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.71 10.20 71.98 0.73 -3.98 16 2 C 0.10 2.99 5.92 86.38 0.51 3.50 16 3 N -0.59 -24.59 2.47 -826.14 -2.04 -26.63 16 4 C 0.22 11.11 4.24 85.64 0.36 11.48 16 5 C -0.52 -29.85 9.66 25.60 0.25 -29.60 16 6 H 0.04 2.82 7.46 -2.91 -0.02 2.80 16 7 C 0.02 0.95 5.47 84.66 0.46 1.41 16 8 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 9 Si 0.93 45.06 27.47 68.60 1.88 46.94 16 10 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 13 C 0.50 21.05 5.77 87.66 0.51 21.55 16 14 O -0.57 -28.96 13.94 -3.04 -0.04 -29.00 16 15 C 0.14 4.27 3.61 41.04 0.15 4.42 16 16 H 0.12 3.35 5.74 -2.39 -0.01 3.33 16 17 N -0.62 -19.63 3.23 -968.17 -3.13 -22.75 16 18 C 0.68 22.69 8.26 129.79 1.07 23.76 16 19 O -0.59 -21.80 12.66 19.79 0.25 -21.55 16 20 O -0.36 -10.53 9.91 -55.40 -0.55 -11.08 16 21 C 0.12 2.67 1.13 -10.79 -0.01 2.66 16 22 C -0.18 -3.44 8.37 71.98 0.60 -2.84 16 23 C -0.13 -1.94 8.85 71.99 0.64 -1.30 16 24 C -0.18 -4.36 8.37 71.98 0.60 -3.76 16 25 C 0.11 3.02 7.28 83.18 0.61 3.63 16 26 C -0.06 -1.46 1.50 -51.85 -0.08 -1.54 16 27 C -0.12 -1.82 9.23 71.98 0.66 -1.15 16 28 C -0.14 -3.90 8.46 71.98 0.61 -3.29 16 29 H 0.06 1.66 5.53 -2.39 -0.01 1.64 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 1.46 7.25 -2.39 -0.02 1.44 16 32 H 0.09 2.34 5.95 -2.39 -0.01 2.33 16 33 H 0.09 2.53 7.83 -2.38 -0.02 2.51 16 34 H 0.01 0.56 6.91 -2.39 -0.02 0.55 16 35 H 0.05 2.15 6.92 -2.39 -0.02 2.13 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.56 5.88 -2.39 -0.01 1.54 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.05 1.71 5.88 -2.39 -0.01 1.69 16 44 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 2.62 6.47 -2.39 -0.02 2.60 16 47 H 0.11 2.30 8.12 -2.39 -0.02 2.28 16 48 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.09 1.08 8.13 -2.38 -0.02 1.06 16 50 H 0.06 0.98 7.92 -2.39 -0.02 0.97 16 51 H 0.03 1.24 6.65 -2.39 -0.02 1.22 16 52 H 0.10 2.00 8.13 -2.39 -0.02 1.98 16 53 H 0.07 1.88 5.70 -2.39 -0.01 1.86 16 Total: -1.00 -79.72 408.77 5.19 -74.53 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.84 Total: 22.88 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 7.68 Total: 24.95 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -4.87 Total: -107.67 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -0.34 Total: -61.64 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -79.72 5.19 -74.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793154318.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.572 kcal (2) G-P(sol) polarization free energy of solvation -79.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds