Wall clock time and date at job start Sat Apr 11 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.47148 * 2 1 4 4 C 1.34224 * 117.00270 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99864 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00187 * 179.72563 * 4 3 2 7 7 C 1.53002 * 110.85738 * 177.18297 * 6 4 3 8 8 C 1.52998 * 109.47422 * 300.70492 * 7 6 4 9 9 C 1.53004 * 109.46810 * 60.70283 * 7 6 4 10 10 C 1.54625 * 110.97165 * 53.35757 * 6 4 3 11 11 C 1.51284 * 104.19725 * 217.08537 * 10 6 4 12 12 O 1.21283 * 124.94000 * 196.25335 * 11 10 6 13 13 N 1.34416 * 110.11565 * 16.24562 * 11 10 6 14 14 C 1.46499 * 124.35136 * 180.38984 * 13 11 10 15 15 N 1.46900 * 109.46976 * 270.02474 * 14 13 11 16 16 C 1.46902 * 111.00095 * 85.01600 * 15 14 13 17 17 C 1.53005 * 109.46892 * 65.46022 * 16 15 14 18 18 C 1.46901 * 111.00239 * 208.97199 * 15 14 13 19 19 C 1.50694 * 109.47402 * 168.66878 * 18 15 14 20 20 H 1.08005 * 119.99928 * 3.43194 * 19 18 15 21 21 C 1.37876 * 120.00149 * 183.42644 * 19 18 15 22 22 N 1.31520 * 119.99911 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99869 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46966 * 89.99709 * 23 21 19 25 25 H 1.48493 * 109.46928 * 209.99774 * 23 21 19 26 26 H 1.48497 * 109.46928 * 330.00041 * 23 21 19 27 27 C 1.46762 * 111.29855 * 0.41171 * 13 11 10 28 28 H 1.08994 * 109.46916 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46647 * 299.99922 * 1 2 3 30 30 H 1.08999 * 109.46900 * 59.99854 * 1 2 3 31 31 H 1.09002 * 109.47078 * 240.00396 * 2 1 3 32 32 H 1.08999 * 109.46900 * 120.00146 * 2 1 3 33 33 H 1.09005 * 109.47198 * 180.70155 * 7 6 4 34 34 H 1.08996 * 109.47315 * 59.99908 * 8 7 6 35 35 H 1.09006 * 109.47447 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47089 * 299.99750 * 8 7 6 37 37 H 1.08997 * 109.47303 * 59.99860 * 9 7 6 38 38 H 1.09006 * 109.47133 * 179.97438 * 9 7 6 39 39 H 1.08996 * 109.47277 * 299.99694 * 9 7 6 40 40 H 1.09005 * 110.48287 * 335.76016 * 10 6 4 41 41 H 1.08998 * 110.49332 * 98.40084 * 10 6 4 42 42 H 1.08996 * 109.47020 * 30.02223 * 14 13 11 43 43 H 1.08993 * 109.47132 * 150.02730 * 14 13 11 44 44 H 1.09002 * 109.47571 * 185.45719 * 16 15 14 45 45 H 1.08998 * 109.47237 * 305.46200 * 16 15 14 46 46 H 1.08998 * 109.47254 * 297.56205 * 17 16 15 47 47 H 1.08999 * 109.46845 * 57.56106 * 17 16 15 48 48 H 1.09001 * 109.47377 * 177.56263 * 17 16 15 49 49 H 1.09005 * 109.46678 * 288.66751 * 18 15 14 50 50 H 1.08999 * 109.46564 * 48.66759 * 18 15 14 51 51 H 0.96995 * 119.99725 * 180.02562 * 22 21 19 52 52 H 1.09001 * 110.24408 * 223.98241 * 27 13 11 53 53 H 1.09004 * 110.32304 * 102.02008 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0068 7 6 5.4485 2.8953 0.0640 8 6 5.8802 2.1742 1.3424 9 6 5.9949 2.1464 -1.1533 10 6 3.3357 3.7835 1.1477 11 6 3.1883 5.1677 0.5554 12 8 3.0292 6.1845 1.1972 13 7 3.2594 5.1069 -0.7854 14 6 3.1623 6.2691 -1.6720 15 7 1.7562 6.4933 -2.0332 16 6 1.0715 7.2956 -1.0108 17 6 1.6789 8.6994 -0.9728 18 6 1.6463 7.1218 -3.3564 19 6 0.2107 7.0834 -3.8132 20 1 -0.5532 6.6871 -3.1606 21 6 -0.1275 7.5542 -5.0641 22 7 -1.3805 7.5211 -5.4625 23 14 1.1938 8.2391 -6.1931 24 1 1.7481 7.1433 -7.0281 25 1 0.6032 9.2806 -7.0714 26 1 2.2804 8.8377 -5.3770 27 6 3.4463 3.7264 -1.2472 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8401 3.9126 0.0706 34 1 5.4887 1.1570 1.3357 35 1 6.9687 2.1446 1.3931 36 1 5.4909 2.7077 2.2096 37 1 5.6874 2.6601 -2.0641 38 1 7.0834 2.1168 -1.1031 39 1 5.6034 1.1292 -1.1599 40 1 2.3645 3.3934 1.4522 41 1 4.0228 3.8016 1.9936 42 1 3.5509 7.1497 -1.1605 43 1 3.7448 6.0868 -2.5751 44 1 0.0110 7.3651 -1.2533 45 1 1.1911 6.8216 -0.0366 46 1 2.7290 8.6333 -0.6879 47 1 1.5981 9.1570 -1.9588 48 1 1.1425 9.3079 -0.2448 49 1 1.9806 8.1576 -3.2955 50 1 2.2688 6.5803 -4.0686 51 1 -1.6184 7.8520 -6.3427 52 1 4.2039 3.6898 -2.0300 53 1 2.5044 3.3196 -1.6154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795413196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:39 Heat of formation + Delta-G solvation = -124.510090 kcal Electronic energy + Delta-G solvation = -32278.600785 eV Core-core repulsion = 28150.239363 eV Total energy + Delta-G solvation = -4128.361421 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.59930 -41.01300 -38.90125 -38.45538 -37.47247 -35.52668 -34.59420 -32.94832 -32.07297 -31.24148 -29.54028 -29.19948 -27.50534 -26.34080 -25.19656 -24.49357 -23.89617 -22.74574 -21.55464 -20.76493 -20.31761 -18.91993 -18.70015 -17.82886 -17.51645 -17.41343 -17.19060 -16.60566 -16.41792 -15.94251 -15.74596 -15.40759 -15.31998 -15.06277 -14.92590 -14.70759 -14.49270 -14.35178 -13.99510 -13.70754 -13.51745 -13.40965 -13.29737 -13.26700 -13.03377 -12.97079 -12.77762 -12.72398 -12.49339 -12.45732 -12.42850 -12.36524 -12.30761 -11.91374 -11.80834 -11.62987 -11.57460 -11.45896 -11.43284 -11.04626 -10.76816 -10.73844 -9.90460 -9.03184 -8.24116 -6.27092 0.97617 1.37861 1.39795 1.46602 1.49920 1.58267 2.01045 2.37495 3.08783 3.14687 3.21667 3.28580 3.33211 3.54778 3.83756 4.04254 4.06844 4.08063 4.21019 4.25077 4.33154 4.34104 4.37290 4.38016 4.43069 4.47031 4.56321 4.60660 4.61046 4.71479 4.78142 4.84293 4.89255 4.93459 4.93804 5.04302 5.06265 5.09422 5.12274 5.19502 5.22154 5.33599 5.38122 5.42144 5.46710 5.55329 5.68578 6.00238 6.05740 6.33558 6.63730 6.68650 6.78564 7.11774 7.35694 8.92802 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.003455 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.537683 B = 8102.349738 C = 8809.966354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.364 6.364 4 C 0.486 3.514 5 O -0.501 6.501 6 C -0.052 4.052 7 C -0.065 4.065 8 C -0.158 4.158 9 C -0.160 4.160 10 C -0.135 4.135 11 C 0.517 3.483 12 O -0.564 6.564 13 N -0.596 5.596 14 C 0.280 3.720 15 N -0.552 5.552 16 C 0.070 3.930 17 C -0.173 4.173 18 C 0.173 3.827 19 C -0.509 4.509 20 H 0.031 0.969 21 C 0.008 3.992 22 N -0.951 5.951 23 Si 0.946 3.054 24 H -0.263 1.263 25 H -0.288 1.288 26 H -0.245 1.245 27 C 0.117 3.883 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.130 0.870 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.004 0.996 50 H 0.036 0.964 51 H 0.265 0.735 52 H 0.110 0.890 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.442 -14.498 12.236 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.281 6.281 4 C 0.328 3.672 5 O -0.389 6.389 6 C -0.054 4.054 7 C -0.084 4.084 8 C -0.215 4.215 9 C -0.217 4.217 10 C -0.175 4.175 11 C 0.306 3.694 12 O -0.443 6.443 13 N -0.330 5.330 14 C 0.069 3.931 15 N -0.277 5.277 16 C -0.059 4.059 17 C -0.232 4.232 18 C 0.046 3.954 19 C -0.548 4.548 20 H 0.050 0.950 21 C -0.189 4.189 22 N -0.592 5.592 23 Si 0.769 3.231 24 H -0.188 1.188 25 H -0.214 1.214 26 H -0.169 1.169 27 C -0.006 4.006 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.148 0.852 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.022 0.978 50 H 0.054 0.946 51 H 0.074 0.926 52 H 0.127 0.873 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.207 -14.652 12.336 24.456 hybrid contribution -0.141 0.978 -0.770 1.252 sum 15.066 -13.675 11.567 23.404 Atomic orbital electron populations 1.21847 0.91557 1.04231 1.03285 1.23276 0.96313 0.78830 1.03071 1.86548 1.24100 1.34112 1.83308 1.23024 0.80665 0.91421 0.72052 1.90571 1.60064 1.43101 1.45141 1.21513 0.98033 0.88653 0.97177 1.20998 0.88188 1.01360 0.97810 1.22061 1.02337 1.01273 0.95796 1.22102 1.01840 1.01379 0.96403 1.22535 1.05188 0.91257 0.98505 1.21098 0.74643 0.91068 0.82611 1.90700 1.51479 1.36686 1.65423 1.48411 1.70299 1.07946 1.06313 1.21940 0.89880 0.87283 0.94028 1.61743 1.13522 1.49352 1.03129 1.21839 0.98010 0.91905 0.94107 1.22211 1.01023 0.98311 1.01651 1.19982 0.95888 0.93120 0.86360 1.21183 0.93210 1.39878 1.00513 0.95038 1.25829 0.97594 0.95923 0.99551 1.70063 1.19423 1.49017 1.20676 0.85738 0.79668 0.78751 0.78933 1.18812 1.21350 1.16890 1.22225 1.02556 0.80166 0.95605 0.87963 0.91531 0.92365 0.90899 0.90250 0.89151 0.91680 0.91127 0.92123 0.92287 0.91162 0.91445 0.86474 0.85196 0.91626 0.87703 0.93446 0.91763 0.92324 0.93027 0.91877 0.97802 0.94602 0.92588 0.87252 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.29 71.98 0.74 -1.45 16 2 C 0.06 0.97 6.19 71.98 0.45 1.41 16 3 O -0.36 -7.81 9.36 -51.36 -0.48 -8.29 16 4 C 0.49 9.99 6.13 71.23 0.44 10.43 16 5 O -0.50 -11.09 11.39 21.96 0.25 -10.84 16 6 C -0.05 -0.99 0.36 -51.87 -0.02 -1.00 16 7 C -0.07 -1.03 2.24 -10.79 -0.02 -1.06 16 8 C -0.16 -2.31 8.72 71.98 0.63 -1.68 16 9 C -0.16 -2.49 8.72 71.98 0.63 -1.86 16 10 C -0.14 -2.76 5.80 30.59 0.18 -2.59 16 11 C 0.52 14.77 7.50 87.90 0.66 15.43 16 12 O -0.56 -20.11 16.12 -3.04 -0.05 -20.16 16 13 N -0.60 -16.46 3.17 -829.07 -2.63 -19.09 16 14 C 0.28 8.80 5.66 170.81 0.97 9.77 16 15 N -0.55 -22.24 4.79 -913.17 -4.37 -26.62 16 16 C 0.07 2.85 5.84 86.30 0.50 3.35 16 17 C -0.17 -6.32 9.32 71.98 0.67 -5.65 16 18 C 0.17 7.84 3.49 85.55 0.30 8.13 16 19 C -0.51 -28.77 9.17 25.60 0.23 -28.54 16 20 H 0.03 2.03 7.31 -2.91 -0.02 2.01 16 21 C 0.01 0.45 5.47 84.65 0.46 0.91 16 22 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 23 Si 0.95 42.46 27.40 68.60 1.88 44.34 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.25 -10.05 6.64 99.48 0.66 -9.39 16 27 C 0.12 2.62 6.31 86.83 0.55 3.17 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 32 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 33 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.06 1.15 5.69 -2.39 -0.01 1.13 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.06 0.80 6.39 -2.39 -0.02 0.78 16 37 H 0.06 0.87 6.29 -2.39 -0.02 0.85 16 38 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.07 1.26 5.59 -2.39 -0.01 1.25 16 40 H 0.12 2.39 7.48 -2.38 -0.02 2.38 16 41 H 0.13 2.15 6.14 -2.39 -0.01 2.13 16 42 H 0.07 2.10 5.61 -2.39 -0.01 2.08 16 43 H 0.10 2.85 7.55 -2.39 -0.02 2.83 16 44 H 0.05 2.23 6.92 -2.39 -0.02 2.22 16 45 H 0.06 2.61 5.96 -2.39 -0.01 2.60 16 46 H 0.06 1.97 6.29 -2.39 -0.02 1.95 16 47 H 0.05 2.02 6.09 -2.39 -0.01 2.00 16 48 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 49 H 0.00 0.20 5.14 -2.38 -0.01 0.18 16 50 H 0.04 1.53 6.99 -2.39 -0.02 1.52 16 51 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 52 H 0.11 2.02 6.02 -2.39 -0.01 2.01 16 53 H 0.07 1.90 7.63 -2.38 -0.02 1.88 16 Total: -1.00 -70.94 398.93 3.12 -67.82 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.86 Total: 22.73 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 7.36 Total: 8.79 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -6.70 Total: -104.39 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.28 Total: -39.29 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Total: -70.94 3.12 -67.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795413196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.688 kcal (2) G-P(sol) polarization free energy of solvation -70.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds