Wall clock time and date at job start Sat Apr 11 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46772 * 2 1 4 4 C 1.46897 * 110.99818 * 190.00121 * 3 2 1 5 5 C 1.53245 * 109.34098 * 187.25098 * 4 3 2 6 6 N 1.47075 * 108.51868 * 306.17070 * 5 4 3 7 7 C 1.34776 * 120.88213 * 231.18078 * 6 5 4 8 8 O 1.21287 * 119.99866 * 4.42481 * 7 6 5 9 9 C 1.50692 * 120.00475 * 184.41856 * 7 6 5 10 10 H 1.09000 * 109.46999 * 43.87034 * 9 7 6 11 11 C 1.53001 * 109.47172 * 283.87189 * 9 7 6 12 12 O 1.45205 * 109.47615 * 163.87231 * 9 7 6 13 13 C 1.34232 * 117.00036 * 210.00578 * 12 9 7 14 14 O 1.20825 * 119.99963 * 359.97438 * 13 12 9 15 15 C 1.50692 * 119.99693 * 180.27254 * 13 12 9 16 16 C 1.53001 * 109.47263 * 179.71946 * 15 13 12 17 17 C 1.52998 * 109.47624 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47323 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.47017 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00062 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99728 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99979 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00281 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46983 * 89.99541 * 23 21 19 25 25 H 1.48495 * 109.47182 * 209.99925 * 23 21 19 26 26 H 1.48507 * 109.46980 * 329.99762 * 23 21 19 27 27 C 1.47075 * 118.24132 * 51.45851 * 6 5 4 28 28 C 1.46907 * 110.99995 * 314.29866 * 3 2 1 29 29 H 1.09000 * 109.47271 * 60.00074 * 1 2 3 30 30 H 1.08997 * 109.47189 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47191 * 299.99778 * 1 2 3 32 32 H 1.08998 * 109.47191 * 240.00222 * 2 1 3 33 33 H 1.09000 * 109.47271 * 119.99926 * 2 1 3 34 34 H 1.09003 * 109.49236 * 67.29624 * 4 3 2 35 35 H 1.08992 * 109.49455 * 307.21077 * 4 3 2 36 36 H 1.08994 * 109.62802 * 186.45996 * 5 4 3 37 37 H 1.09000 * 109.62635 * 65.87918 * 5 4 3 38 38 H 1.08998 * 109.47261 * 61.53971 * 11 9 7 39 39 H 1.09005 * 109.46985 * 181.54005 * 11 9 7 40 40 H 1.08995 * 109.47050 * 301.54041 * 11 9 7 41 41 H 1.08998 * 109.47231 * 299.72274 * 15 13 12 42 42 H 1.08996 * 109.47307 * 59.72114 * 15 13 12 43 43 H 1.08998 * 109.47265 * 300.00308 * 16 15 13 44 44 H 1.09002 * 109.47152 * 59.99656 * 16 15 13 45 45 H 1.09007 * 109.47034 * 300.00255 * 17 16 15 46 46 H 1.09002 * 109.47096 * 59.99672 * 17 16 15 47 47 H 1.08998 * 109.47362 * 300.00233 * 18 17 16 48 48 H 1.09002 * 109.46872 * 60.00364 * 18 17 16 49 49 H 0.96992 * 120.00455 * 180.02562 * 22 21 19 50 50 H 1.09006 * 109.63171 * 68.24775 * 27 6 5 51 51 H 1.09004 * 109.63432 * 188.83044 * 27 6 5 52 52 H 1.08992 * 109.49497 * 292.70959 * 28 3 2 53 53 H 1.09007 * 109.48742 * 52.79338 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4684 1.4312 -0.2382 5 6 3.9679 2.8679 -0.0515 6 7 3.1681 3.7557 -0.9089 7 6 3.7626 4.6259 -1.7490 8 8 4.9699 4.6290 -1.8643 9 6 2.9272 5.5950 -2.5452 10 1 2.1605 6.0272 -1.9023 11 6 2.2611 4.8579 -3.7088 12 8 3.7759 6.6526 -3.0646 13 6 3.2108 7.8578 -3.2375 14 8 2.0456 8.0235 -2.9642 15 6 4.0281 9.0024 -3.7786 16 6 3.1501 10.2511 -3.8838 17 6 3.9799 11.4134 -4.4326 18 6 3.1021 12.6621 -4.5371 19 6 3.9197 13.8071 -5.0771 20 1 4.9611 13.6589 -5.3216 21 6 3.3378 15.0437 -5.2598 22 7 4.0514 16.0431 -5.7306 23 14 1.5363 15.2999 -4.8375 24 1 1.4162 15.7287 -3.4208 25 1 0.9647 16.3470 -5.7218 26 1 0.7960 14.0277 -5.0342 27 6 1.7023 3.6731 -0.8208 28 6 1.2920 2.2006 -0.9816 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6805 1.1018 -1.2554 35 1 3.9745 0.7753 0.4700 36 1 5.0177 2.9306 -0.3377 37 1 3.8514 3.1634 0.9912 38 1 1.6029 4.0819 -3.3182 39 1 1.6789 5.5642 -4.3006 40 1 3.0270 4.4026 -4.3365 41 1 4.8637 9.2013 -3.1077 42 1 4.4090 8.7420 -4.7660 43 1 2.3144 10.0522 -4.5547 44 1 2.7691 10.5115 -2.8963 45 1 4.8154 11.6122 -3.7612 46 1 4.3613 11.1532 -5.4200 47 1 2.2664 12.4637 -5.2081 48 1 2.7212 12.9221 -3.5495 49 1 3.6423 16.9131 -5.8588 50 1 1.3722 4.0445 0.1494 51 1 1.2535 4.2685 -1.6160 52 1 1.5344 1.8604 -1.9883 53 1 0.2196 2.1026 -0.8123 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805695420.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:42 Heat of formation + Delta-G solvation = -144.554825 kcal Electronic energy + Delta-G solvation = -29664.315517 eV Core-core repulsion = 25535.084891 eV Total energy + Delta-G solvation = -4129.230626 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11362 -41.13623 -39.36435 -37.85089 -36.65945 -36.26355 -34.66258 -33.78811 -32.22134 -31.69313 -31.44852 -28.08182 -28.00577 -25.75116 -25.02934 -24.23334 -23.05741 -22.08005 -21.77971 -21.46603 -20.15224 -19.08760 -18.82659 -18.34802 -17.68508 -17.60391 -16.65583 -16.56135 -16.36184 -16.24268 -16.15388 -16.06125 -15.86413 -15.23310 -15.08799 -14.76386 -14.54606 -14.35321 -13.98143 -13.80113 -13.68601 -13.55787 -13.49461 -13.40899 -13.04351 -12.90090 -12.86760 -12.78600 -12.37842 -12.35900 -12.21493 -12.14126 -12.12552 -11.99135 -11.75425 -11.74181 -11.67910 -11.40452 -11.33261 -11.24652 -10.90370 -10.74646 -9.98448 -9.32527 -8.28062 -6.31703 1.02159 1.13905 1.32186 1.36736 1.38213 1.50810 2.01015 2.37530 2.82578 3.07492 3.11208 3.55207 3.71203 3.72527 3.77106 3.86383 3.92871 3.99260 4.08547 4.12380 4.17148 4.32318 4.36160 4.38940 4.44581 4.54158 4.54855 4.59021 4.59201 4.65587 4.71046 4.73313 4.78189 4.81751 4.90527 5.01290 5.01644 5.10160 5.13262 5.13996 5.18792 5.26556 5.32338 5.34755 5.59998 5.65641 5.69537 5.93558 5.99212 6.13957 6.30929 6.61403 6.76832 6.85914 7.33159 8.88694 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027860 B = 0.001621 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.774634 B =17273.727211 C =17868.371236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.051 3.949 3 N -0.545 5.545 4 C 0.049 3.951 5 C 0.115 3.885 6 N -0.605 5.605 7 C 0.520 3.480 8 O -0.562 6.562 9 C 0.063 3.937 10 H 0.116 0.884 11 C -0.161 4.161 12 O -0.344 6.344 13 C 0.468 3.532 14 O -0.527 6.527 15 C -0.108 4.108 16 C -0.099 4.099 17 C -0.096 4.096 18 C -0.016 4.016 19 C -0.533 4.533 20 H 0.034 0.966 21 C 0.003 3.997 22 N -0.952 5.952 23 Si 0.950 3.050 24 H -0.268 1.268 25 H -0.283 1.283 26 H -0.248 1.248 27 C 0.096 3.904 28 C 0.035 3.965 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.018 0.982 48 H 0.016 0.984 49 H 0.266 0.734 50 H 0.091 0.909 51 H 0.104 0.896 52 H 0.038 0.962 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.273 -39.297 13.126 42.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.076 4.076 3 N -0.271 5.271 4 C -0.080 4.080 5 C -0.007 4.007 6 N -0.340 5.340 7 C 0.307 3.693 8 O -0.440 6.440 9 C 0.005 3.995 10 H 0.134 0.866 11 C -0.219 4.219 12 O -0.260 6.260 13 C 0.313 3.687 14 O -0.416 6.416 15 C -0.145 4.145 16 C -0.136 4.136 17 C -0.134 4.134 18 C -0.053 4.053 19 C -0.571 4.571 20 H 0.053 0.947 21 C -0.194 4.194 22 N -0.593 5.593 23 Si 0.773 3.227 24 H -0.193 1.193 25 H -0.209 1.209 26 H -0.171 1.171 27 C -0.026 4.026 28 C -0.093 4.093 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.037 0.963 48 H 0.034 0.966 49 H 0.074 0.926 50 H 0.109 0.891 51 H 0.122 0.878 52 H 0.057 0.943 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.082 -38.929 13.573 42.216 hybrid contribution -0.152 0.399 -0.763 0.874 sum -9.234 -38.530 12.810 41.641 Atomic orbital electron populations 1.21938 0.93931 1.02763 1.02628 1.22137 0.96606 0.87777 1.01120 1.62052 1.03421 1.11904 1.49711 1.22418 0.88907 0.96116 1.00517 1.21804 0.95737 0.88560 0.94599 1.48162 1.08626 1.37593 1.39598 1.20367 0.87877 0.81490 0.79573 1.90718 1.16003 1.70976 1.66272 1.22640 0.92142 0.86776 0.97910 0.86641 1.22235 1.01329 1.01557 0.96731 1.86664 1.43956 1.19513 1.75856 1.24335 0.87147 0.83304 0.73930 1.90636 1.18779 1.83726 1.48424 1.21524 0.99018 0.88973 1.04955 1.21384 0.97877 0.92427 1.01948 1.21343 0.98046 0.93402 1.00604 1.19564 0.95958 0.93746 0.96049 1.21571 0.97605 0.95400 1.42561 0.94726 1.26027 1.03167 0.95641 0.94546 1.70068 1.38844 1.02607 1.47789 0.85660 0.79662 0.78772 0.78575 1.19266 1.20899 1.17119 1.22421 0.77681 0.97823 1.04632 1.22752 1.00893 0.91851 0.93834 0.91883 0.91255 0.91794 0.94992 0.90014 0.95069 0.87841 0.89928 0.89578 0.87375 0.90307 0.91191 0.86075 0.85581 0.91687 0.91946 0.92506 0.92303 0.96320 0.96578 0.92556 0.89096 0.87801 0.94340 0.86640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.16 71.98 0.66 0.00 16 2 C 0.05 0.32 5.99 86.30 0.52 0.84 16 3 N -0.55 -4.71 4.78 -894.28 -4.27 -8.98 16 4 C 0.05 0.48 5.58 86.39 0.48 0.97 16 5 C 0.12 1.57 6.61 86.35 0.57 2.14 16 6 N -0.61 -9.28 3.00 -817.06 -2.45 -11.74 16 7 C 0.52 11.47 7.01 87.65 0.61 12.09 16 8 O -0.56 -17.21 16.03 15.20 0.24 -16.97 16 9 C 0.06 1.28 2.12 29.85 0.06 1.35 16 10 H 0.12 2.15 6.33 -2.39 -0.02 2.13 16 11 C -0.16 -2.34 9.20 71.98 0.66 -1.68 16 12 O -0.34 -8.90 9.47 -45.24 -0.43 -9.33 16 13 C 0.47 12.32 7.93 71.23 0.56 12.88 16 14 O -0.53 -15.70 15.20 21.97 0.33 -15.36 16 15 C -0.11 -2.62 5.81 29.85 0.17 -2.44 16 16 C -0.10 -3.01 4.50 30.59 0.14 -2.87 16 17 C -0.10 -3.63 5.15 30.59 0.16 -3.47 16 18 C -0.02 -0.75 4.04 29.85 0.12 -0.63 16 19 C -0.53 -31.31 9.66 25.60 0.25 -31.06 16 20 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 21 C 0.00 0.16 5.47 84.66 0.46 0.62 16 22 N -0.95 -60.70 13.96 21.45 0.30 -60.41 16 23 Si 0.95 45.25 27.47 68.60 1.88 47.14 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 26 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 27 C 0.10 0.87 5.95 86.50 0.51 1.39 16 28 C 0.03 0.25 5.06 86.54 0.44 0.69 16 29 H 0.06 0.22 6.18 -2.39 -0.01 0.21 16 30 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.06 0.32 8.14 -2.39 -0.02 0.31 16 32 H 0.03 0.22 8.08 -2.39 -0.02 0.20 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.10 0.73 8.11 -2.39 -0.02 0.71 16 36 H 0.08 1.42 7.04 -2.39 -0.02 1.40 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 0.91 6.08 -2.39 -0.01 0.89 16 39 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.06 2.01 8.10 -2.39 -0.02 1.99 16 44 H 0.06 1.96 8.10 -2.39 -0.02 1.94 16 45 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 46 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 48 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 49 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 50 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 51 H 0.10 0.72 4.37 -2.39 -0.01 0.71 16 52 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 53 H 0.12 0.45 5.73 -2.38 -0.01 0.43 16 Total: -1.00 -77.56 414.94 2.81 -74.75 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.82 Total: 10.09 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 6.39 Total: -9.19 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -6.43 Total: -81.13 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: 0.15 Total: -41.66 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.14 kcal Total: -77.56 2.81 -74.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695420.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.810 kcal (2) G-P(sol) polarization free energy of solvation -77.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds