Wall clock time and date at job start Sat Apr 11 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46534 * 2 1 4 4 C 1.50691 * 109.47609 * 239.99443 * 2 1 3 5 5 O 1.21286 * 120.00182 * 269.14502 * 4 2 1 6 6 N 1.34776 * 120.00144 * 89.42428 * 4 2 1 7 7 C 1.46501 * 119.99728 * 4.54305 * 6 4 2 8 8 C 1.46505 * 120.00301 * 184.54316 * 6 4 2 9 9 C 1.50700 * 109.47160 * 89.99722 * 8 6 4 10 10 H 1.08005 * 119.99572 * 0.02562 * 9 8 6 11 11 C 1.37872 * 119.99999 * 179.97438 * 9 8 6 12 12 N 1.31521 * 119.99890 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00102 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47105 * 90.00009 * 13 11 9 15 15 H 1.48500 * 109.47147 * 210.00201 * 13 11 9 16 16 H 1.48506 * 109.46873 * 329.99736 * 13 11 9 17 17 N 1.46906 * 109.47004 * 119.99084 * 2 1 3 18 18 C 1.46847 * 110.99731 * 174.74570 * 17 2 1 19 19 C 1.53042 * 109.52324 * 185.84066 * 18 17 2 20 20 C 1.53124 * 109.27721 * 300.82418 * 19 18 17 21 21 C 1.53118 * 109.16181 * 57.64861 * 20 19 18 22 22 H 1.09005 * 109.49846 * 62.28804 * 21 20 19 23 23 C 1.52998 * 109.50223 * 182.40291 * 21 20 19 24 24 C 1.52997 * 109.47506 * 299.80843 * 23 21 20 25 25 C 1.53003 * 109.46904 * 59.80784 * 23 21 20 26 26 C 1.50696 * 109.47081 * 179.80524 * 23 21 20 27 27 O 1.20825 * 120.00088 * 0.02562 * 26 23 21 28 28 O 1.34238 * 119.99954 * 180.02562 * 26 23 21 29 29 C 1.46844 * 110.99885 * 298.95494 * 17 2 1 30 30 H 1.08998 * 109.47570 * 305.35242 * 1 2 3 31 31 H 1.08998 * 109.47014 * 65.36265 * 1 2 3 32 32 H 1.09001 * 109.46763 * 185.35026 * 1 2 3 33 33 H 1.08995 * 109.47454 * 89.73222 * 7 6 4 34 34 H 1.09007 * 109.47256 * 209.73350 * 7 6 4 35 35 H 1.09003 * 109.47039 * 329.72854 * 7 6 4 36 36 H 1.08999 * 109.46726 * 210.00075 * 8 6 4 37 37 H 1.08994 * 109.46936 * 329.99687 * 8 6 4 38 38 H 0.96997 * 119.99846 * 180.02562 * 12 11 9 39 39 H 1.08997 * 109.46607 * 305.85315 * 18 17 2 40 40 H 1.08998 * 109.46576 * 65.82953 * 18 17 2 41 41 H 1.08997 * 109.50407 * 180.87835 * 19 18 17 42 42 H 1.08999 * 109.49736 * 60.76025 * 19 18 17 43 43 H 1.09001 * 109.51760 * 297.74646 * 20 19 18 44 44 H 1.09000 * 109.52239 * 177.55660 * 20 19 18 45 45 H 1.09001 * 109.47398 * 59.99284 * 24 23 21 46 46 H 1.08996 * 109.47569 * 179.97438 * 24 23 21 47 47 H 1.09002 * 109.47000 * 299.99865 * 24 23 21 48 48 H 1.08994 * 109.47150 * 59.99761 * 25 23 21 49 49 H 1.08996 * 109.47073 * 180.02562 * 25 23 21 50 50 H 1.09007 * 109.46982 * 299.99841 * 25 23 21 51 51 H 0.96696 * 116.99853 * 179.97438 * 28 26 23 52 52 H 1.08998 * 109.46433 * 294.17162 * 29 17 2 53 53 H 1.08993 * 109.46291 * 54.15897 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.2494 -1.9033 -1.1957 6 7 2.2460 -0.0194 -2.3675 7 6 2.0857 1.4367 -2.3809 8 6 2.6386 -0.7244 -3.5903 9 6 1.4049 -1.1201 -4.3601 10 1 0.4263 -0.8709 -3.9770 11 6 1.5255 -1.7992 -5.5539 12 7 0.4489 -2.1440 -6.2260 13 14 3.2181 -2.2295 -6.2169 14 1 3.6267 -3.5616 -5.7036 15 1 3.1747 -2.2627 -7.7009 16 1 4.1983 -1.2059 -5.7732 17 7 2.0196 -0.6923 1.1996 18 6 3.4821 -0.8216 1.1724 19 6 3.9426 -1.6713 2.3590 20 6 3.4946 -1.0043 3.6625 21 6 1.9726 -0.8375 3.6444 22 1 1.4997 -1.8183 3.5937 23 6 1.5225 -0.1176 4.9172 24 6 1.9261 -0.9434 6.1402 25 6 2.1891 1.2578 4.9879 26 6 0.0251 0.0505 4.8963 27 8 -0.6164 -0.3635 3.9599 28 8 -0.5961 0.6602 5.9183 29 6 1.5693 -0.0120 2.4205 30 1 -0.3634 0.5946 0.8381 31 1 -0.3633 0.4284 -0.9341 32 1 -0.3633 -1.0232 0.0958 33 1 3.0343 1.9091 -2.1260 34 1 1.7748 1.7589 -3.3747 35 1 1.3285 1.7256 -1.6519 36 1 3.2560 -0.0694 -4.2050 37 1 3.2056 -1.6177 -3.3286 38 1 0.5337 -2.6221 -7.0657 39 1 3.7872 -1.3012 0.2423 40 1 3.9355 0.1676 1.2366 41 1 5.0294 -1.7541 2.3474 42 1 3.5006 -2.6651 2.2881 43 1 3.9672 -0.0262 3.7523 44 1 3.7826 -1.6282 4.5086 45 1 3.0092 -1.0651 6.1552 46 1 1.6058 -0.4303 7.0469 47 1 1.4512 -1.9233 6.0898 48 1 1.9016 1.8462 4.1167 49 1 1.8688 1.7705 5.8949 50 1 3.2723 1.1362 5.0030 51 1 -1.5576 0.7449 5.8599 52 1 2.0316 0.9734 2.4788 53 1 0.4850 0.0963 2.3970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833402549.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:49 Heat of formation + Delta-G solvation = -146.034526 kcal Electronic energy + Delta-G solvation = -32192.413161 eV Core-core repulsion = 28063.118370 eV Total energy + Delta-G solvation = -4129.294791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.05739 -41.15007 -39.59664 -37.20884 -36.96904 -36.54021 -34.86847 -34.34473 -31.38768 -30.72496 -30.16580 -28.33793 -27.47142 -26.18818 -25.80412 -24.54617 -24.01680 -22.69023 -21.36114 -20.04213 -19.56995 -19.15530 -18.80190 -18.19001 -17.57249 -17.26028 -16.84917 -16.60059 -16.41707 -15.88820 -15.71780 -15.39859 -15.16155 -14.90087 -14.73418 -14.45388 -14.36033 -14.25082 -13.96170 -13.90230 -13.68878 -13.49871 -13.31992 -13.11919 -13.00128 -12.90711 -12.82804 -12.75820 -12.60922 -12.53875 -12.45442 -12.33631 -12.08957 -11.98936 -11.77439 -11.76112 -11.64514 -11.38889 -11.26568 -10.84984 -10.82451 -10.47134 -9.41696 -9.17251 -8.35725 -6.41143 1.25474 1.30669 1.35573 1.43774 1.73505 2.13441 2.17422 2.29575 2.87822 2.98500 3.49678 3.63209 3.72879 3.85727 3.97707 4.04917 4.07084 4.15228 4.18486 4.33166 4.37619 4.39561 4.47040 4.53282 4.59483 4.61526 4.68742 4.76574 4.76909 4.81856 4.83369 4.88415 4.90641 4.93495 4.96936 5.01361 5.05495 5.08844 5.14739 5.17031 5.22906 5.32955 5.43669 5.44906 5.54633 5.58865 5.70012 6.00977 6.22356 6.23750 6.60207 6.67707 7.04899 7.19624 7.41619 8.81402 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.002751 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.999770 B =10176.252298 C =10710.306226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.080 3.920 3 H 0.085 0.915 4 C 0.507 3.493 5 O -0.575 6.575 6 N -0.609 5.609 7 C 0.075 3.925 8 C 0.225 3.775 9 C -0.537 4.537 10 H 0.027 0.973 11 C 0.010 3.990 12 N -0.946 5.946 13 Si 0.950 3.050 14 H -0.277 1.277 15 H -0.273 1.273 16 H -0.237 1.237 17 N -0.535 5.535 18 C 0.050 3.950 19 C -0.110 4.110 20 C -0.107 4.107 21 C -0.062 4.062 22 H 0.059 0.941 23 C -0.043 4.043 24 C -0.140 4.140 25 C -0.144 4.144 26 C 0.483 3.517 27 O -0.542 6.542 28 O -0.509 6.509 29 C 0.049 3.951 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.017 0.983 38 H 0.269 0.731 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.093 0.907 51 H 0.424 0.576 52 H 0.048 0.952 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.206 12.563 29.374 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.031 4.031 3 H 0.102 0.898 4 C 0.295 3.705 5 O -0.454 6.454 6 N -0.341 5.341 7 C -0.067 4.067 8 C 0.103 3.897 9 C -0.576 4.576 10 H 0.046 0.954 11 C -0.188 4.188 12 N -0.586 5.586 13 Si 0.772 3.228 14 H -0.203 1.203 15 H -0.198 1.198 16 H -0.160 1.160 17 N -0.261 5.261 18 C -0.078 4.078 19 C -0.148 4.148 20 C -0.144 4.144 21 C -0.081 4.081 22 H 0.077 0.923 23 C -0.044 4.044 24 C -0.197 4.197 25 C -0.201 4.201 26 C 0.326 3.674 27 O -0.432 6.432 28 O -0.322 6.322 29 C -0.078 4.078 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.099 0.901 50 H 0.112 0.888 51 H 0.285 0.715 52 H 0.066 0.934 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.310 11.275 28.992 31.955 hybrid contribution -0.676 -0.076 -1.370 1.529 sum 6.634 11.200 27.622 30.536 Atomic orbital electron populations 1.21671 0.91990 1.02339 1.02739 1.21526 0.97239 0.96252 0.88113 0.89802 1.20992 0.77167 0.87299 0.85086 1.90618 1.52554 1.17242 1.84985 1.47977 1.67491 1.08983 1.09640 1.22002 1.02637 0.78157 1.03934 1.19318 0.94668 0.93007 0.82710 1.21564 0.93060 1.37206 1.05762 0.95429 1.25873 1.01447 0.94670 0.96773 1.70056 1.31096 1.40933 1.16478 0.85692 0.79569 0.79748 0.77790 1.20317 1.19808 1.16001 1.61542 1.11746 1.52066 1.00759 1.22179 0.86650 0.99143 0.99803 1.21517 1.00961 0.98584 0.93730 1.21755 0.92999 1.02301 0.97365 1.21012 0.97277 0.98512 0.91295 0.92274 1.20543 0.85945 0.99952 0.97975 1.21930 1.03946 0.98827 0.94985 1.22025 1.02363 0.92465 1.03251 1.23887 0.92326 0.72560 0.78603 1.90729 1.68586 1.47676 1.36184 1.84482 1.29798 1.72105 1.45781 1.22582 1.01942 0.95090 0.88138 0.89298 0.91917 0.93960 0.90264 0.91088 0.89788 0.93051 0.96450 0.92232 0.93419 0.93732 0.89666 0.93319 0.89528 0.89138 0.88746 0.90085 0.92934 0.92445 0.90098 0.88846 0.71499 0.93404 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 8.64 71.98 0.62 -3.62 16 2 C 0.08 2.64 1.65 44.16 0.07 2.71 16 3 H 0.08 2.21 6.46 -2.39 -0.02 2.20 16 4 C 0.51 22.15 5.68 87.65 0.50 22.65 16 5 O -0.58 -30.88 14.84 -3.05 -0.05 -30.92 16 6 N -0.61 -26.00 2.86 -851.12 -2.43 -28.43 16 7 C 0.07 2.25 9.94 127.77 1.27 3.52 16 8 C 0.23 11.39 4.27 85.63 0.37 11.75 16 9 C -0.54 -32.64 9.94 25.60 0.25 -32.38 16 10 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 11 C 0.01 0.62 5.47 84.65 0.46 1.09 16 12 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 13 Si 0.95 45.58 27.47 68.60 1.88 47.46 16 14 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 15 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 17 N -0.54 -16.66 4.28 -875.53 -3.75 -20.41 16 18 C 0.05 1.42 5.09 86.33 0.44 1.86 16 19 C -0.11 -2.45 6.09 30.65 0.19 -2.26 16 20 C -0.11 -1.62 4.57 30.68 0.14 -1.48 16 21 C -0.06 -1.20 1.35 -10.74 -0.01 -1.22 16 22 H 0.06 1.52 8.10 -2.38 -0.02 1.50 16 23 C -0.04 -0.58 0.52 -52.93 -0.03 -0.61 16 24 C -0.14 -1.35 8.06 71.98 0.58 -0.77 16 25 C -0.14 -1.33 7.70 71.98 0.55 -0.78 16 26 C 0.48 8.53 6.64 71.23 0.47 9.00 16 27 O -0.54 -14.11 14.42 21.97 0.32 -13.79 16 28 O -0.51 -5.85 13.23 -51.49 -0.68 -6.53 16 29 C 0.05 1.17 3.86 86.33 0.33 1.50 16 30 H 0.09 2.40 6.59 -2.39 -0.02 2.38 16 31 H 0.06 2.06 7.71 -2.39 -0.02 2.04 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 2.23 8.07 -2.38 -0.02 2.22 16 35 H 0.08 2.12 5.77 -2.39 -0.01 2.10 16 36 H 0.05 2.36 7.13 -2.39 -0.02 2.34 16 37 H 0.02 0.95 6.79 -2.39 -0.02 0.93 16 38 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 39 H 0.05 1.75 5.87 -2.39 -0.01 1.74 16 40 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 0.97 6.31 -2.39 -0.02 0.95 16 44 H 0.09 1.00 6.58 -2.39 -0.02 0.98 16 45 H 0.09 0.58 6.49 -2.39 -0.02 0.57 16 46 H 0.08 0.62 8.11 -2.39 -0.02 0.60 16 47 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.06 0.63 6.41 -2.39 -0.02 0.61 16 49 H 0.08 0.59 8.11 -2.39 -0.02 0.57 16 50 H 0.09 0.57 6.38 -2.38 -0.02 0.56 16 51 H 0.42 1.96 9.10 -74.06 -0.67 1.28 16 52 H 0.05 0.94 6.38 -2.39 -0.02 0.92 16 53 H 0.09 2.36 3.55 -2.39 -0.01 2.36 16 Total: -1.00 -86.63 396.44 1.99 -84.63 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.19 Total: 17.96 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 6.21 Total: 10.96 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -5.88 Total: -109.76 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.41 Total: -51.25 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.88 Total: 47.46 kcal Total: -86.63 1.99 -84.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833402549.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.400 kcal (2) G-P(sol) polarization free energy of solvation -86.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds